mRNA_C-linearis_contig87.16310.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig87.16310.1
Unique NamemRNA_C-linearis_contig87.16310.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig87.16310.1 vs. uniprot
Match: D7FGZ9_ECTSI (DNA repair protein RAD52 homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGZ9_ECTSI)

HSP 1 Score: 303 bits (775), Expect = 3.470e-92
Identity = 151/197 (76.65%), Postives = 170/197 (86.29%), Query Frame = 1 
Query:    1 MEPASYNSERQG-SGQGGQWVFGTDKFTKEDNARIQKASQNYYYYYATARFWDQINSRPGGGGKQVKYLAGHTVFENTNKVFGFAGWDSSILHLSVDYQSDDGRFWMASATAIVRVSLGNGCGHEDVGNAHLKDRDKGEVLQRVKKAAVTDATKRALRLFGTQLGISMSDKEGLKDAERTHKQNQKELKANQQRDAK 588
            MEP SYN+ERQG SGQG QW+FGTDKF+ ED+ARIQ+A         TA  WDQINSRPGGGGK+V YLAGHTV EN NKVFGFAGWDSSILHLS+DY+S+DGRFWMA ATAIVR+++ NGCGHEDVGN+H+KD+DKGEVL RVKKAAVTDA KRALRLFGTQLG  M DKEGLK+ E THKQNQ+ELKANQQR+A+
Sbjct:    1 MEPTSYNAERQGASGQGAQWIFGTDKFSDEDHARIQQALN-------TALSWDQINSRPGGGGKKVPYLAGHTVIENANKVFGFAGWDSSILHLSLDYKSEDGRFWMAGATAIVRITVANGCGHEDVGNSHMKDKDKGEVLSRVKKAAVTDAKKRALRLFGTQLGSQMMDKEGLKETEITHKQNQRELKANQQREAR 190
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BLAST of mRNA_C-linearis_contig87.16310.1 vs. uniprot
Match: A0A6H5JZ89_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ89_9PHAE)

HSP 1 Score: 161 bits (407), Expect = 4.940e-40
Identity = 79/99 (79.80%), Postives = 91/99 (91.92%), Query Frame = 1 
Query:  292 QSDDGRFWMASATAIVRVSLGNGCGHEDVGNAHLKDRDKGEVLQRVKKAAVTDATKRALRLFGTQLGISMSDKEGLKDAERTHKQNQKELKANQQRDAK 588
            +S+DGRFWMA ATAIVR+++ NGCGHEDVGN+H+KDRDKGEVL RVKKAAVTDA KRALRLFGTQLG  M+DKEGLK+ E THKQNQ+ELKANQQR+A+
Sbjct:    9 KSEDGRFWMAGATAIVRITVANGCGHEDVGNSHMKDRDKGEVLSRVKKAAVTDAKKRALRLFGTQLGSQMTDKEGLKETEITHKQNQRELKANQQREAR 107
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BLAST of mRNA_C-linearis_contig87.16310.1 vs. uniprot
Match: A0A6H5K4D8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4D8_9PHAE)

HSP 1 Score: 149 bits (375), Expect = 6.970e-39
Identity = 74/100 (74.00%), Postives = 81/100 (81.00%), Query Frame = 1 
Query:    1 MEPASYNSERQG-SGQGGQWVFGTDKFTKEDNARIQKASQNYYYYYATARFWDQINSRPGGGGKQVKYLAGHTVFENTNKVFGFAGWDSSILHLSVDYQS 297
            MEP SYN+ERQG SGQG QW+FGTDKF+ ED+ARIQ+A         TA  WDQINSRPGGGGK+V YLAGHTV EN NKVFGFAGWDSSILHLS+DY S
Sbjct:    1 MEPTSYNAERQGTSGQGAQWIFGTDKFSDEDHARIQEALN-------TALSWDQINSRPGGGGKKVPYLAGHTVIENANKVFGFAGWDSSILHLSLDYVS 93
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BLAST of mRNA_C-linearis_contig87.16310.1 vs. uniprot
Match: UPI000644DBF2 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644DBF2)

HSP 1 Score: 106 bits (264), Expect = 1.010e-22
Identity = 60/157 (38.22%), Postives = 91/157 (57.96%), Query Frame = 1 
Query:   58 VFGTDKFTKEDNARIQKASQNYYYYYATARFWDQINSRPGGGGKQVKYLAGHTVFENTNKVFGFAGWDSSILHLSVDY--QSDDGRFWMASATAIVRVSLGNGCGHEDVGNAHLKDRDKGEVLQRVKKAAVTDATKRALRLFGTQLGISMSDKEGLK 522
            +FG + +T+E+  R+           +T    D  + RPG GG ++ YL      E  N+VFGF GW S I+ L++D+   +  G+ W A A+AI+R+ L +G  H+DVG    +D +KG  ++  KK AV+DA KR+LR+FG  LG  + DK+ LK
Sbjct:    8 LFGNESYTQEEIERLA-------IELSTPLPRDDQSERPGPGGTRLTYLESWKAIEIANRVFGFNGWSSRIVELTLDFCEVAPSGK-WRAGASAIIRIMLKDGTFHDDVGFGMREDSNKGTSIEHAKKEAVSDARKRSLRVFGNALGNKLYDKDPLK 156
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BLAST of mRNA_C-linearis_contig87.16310.1 vs. uniprot
Match: A0A2P6NIG4_9EUKA (Uncharacterized protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NIG4_9EUKA)

HSP 1 Score: 107 bits (267), Expect = 1.730e-22
Identity = 62/170 (36.47%), Postives = 92/170 (54.12%), Query Frame = 1 
Query:   58 VFGTDKFTKEDNARI-----QKASQNYYYYYATARFWDQINSRPGGGGKQVKYLAGHTVFENTNKVFGFAGWDSSILHLSVDYQSDDGRFWMASATAIVRVSLGNGCGHEDVGNAHLKDRDKGEVLQRVKKAAVTDATKRALRLFGTQLGISMSDKEGLKDAERTHKQNQ 552
             FG  ++T E+ + I     QK   N            ++  R G G + V YL      E  N++FG+ GW SS+++LS D+   +G+ +    +A+VRV L +G  HEDVG     +  KG  +++ KK A++DA KRALRLFG +LG S+ DKE +K  +   K NQ
Sbjct:   12 TFGELEYTNEEKSAIGNILEQKLGAN------------EVAFRTGAGSQSVGYLEAWRAIELANEIFGYDGWSSSVINLSQDFLEGEGQRFSCGISAVVRVQLKDGSFHEDVGYGTADNMKKGLAIEKAKKEAISDALKRALRLFGNRLGNSVYDKEHMKANQAQQKANQ 169
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BLAST of mRNA_C-linearis_contig87.16310.1 vs. uniprot
Match: A0A0A1UCM6_ENTIV (DNA repair and recombination protein RAD52, putative n=1 Tax=Entamoeba invadens IP1 TaxID=370355 RepID=A0A0A1UCM6_ENTIV)

HSP 1 Score: 106 bits (264), Expect = 3.080e-22
Identity = 64/166 (38.55%), Postives = 88/166 (53.01%), Query Frame = 1 
Query:   58 VFGTDKFTKEDNARI---QKASQNYYYYYATARFWDQINSRPGGGGKQVKYLAGHTVFENTNKVFGFAGWDSSILHLSVDYQSDDGRFWMASATAIVRVSLGNGCGHEDVGNAHLKDRDKGEVLQRVKKAAVTDATKRALRLFGTQLGISMSDKEGLKDAERTHKQ 546
            +FGT  FT  +  +    QK   NY            ++ RPG    ++ YL    V E +N +FGF GW S I +L+VDY   +   +    TA+VRV+L NG  HEDVG    +   KG  ++  KK AV+DA KRALRLFG  LG S+ D + ++  +  HKQ
Sbjct:    5 LFGTQSFTNPEQIQQILEQKVPVNY------------VSVRPGPSNMKLTYLESWRVVELSNALFGFDGWSSCITNLNVDYVDAEKGKYKVGVTAVVRVTLKNGSYHEDVGVGMAEMPRKGAAIELAKKEAVSDARKRALRLFGNYLGNSLYDTDYVRQLDTNHKQ 158
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BLAST of mRNA_C-linearis_contig87.16310.1 vs. uniprot
Match: A0A166WH72_9AGAM (Recombination protein Rad52 (Fragment) n=1 Tax=Fibularhizoctonia sp. CBS 109695 TaxID=436010 RepID=A0A166WH72_9AGAM)

HSP 1 Score: 103 bits (258), Expect = 3.260e-22
Identity = 55/122 (45.08%), Postives = 78/122 (63.93%), Query Frame = 1 
Query:  154 DQINSRPGGGGKQVKYLAGHTVFENTNKVFGFAGWDSSILHLSVDYQ--SDDGRFWMASATAIVRVSLGNGCGHEDVGNAHLKD-RDKGEVLQRVKKAAVTDATKRALRLFGTQLGISMSDK 510
            + I+ RPG GG+++ Y  G  +    N+VFGF GW SSI++LS+D    +++ R W    +AIVRV+L +G  HED+G   L++ + KG  L + KK AVTDA KRALR FG  +G  + DK
Sbjct:   36 EYISQRPGPGGQKLTYAEGWKIINLANEVFGFNGWSSSIVNLSIDTTDFNEESRKWSVGVSAIVRVTLRDGTFHEDIGYGILENSKTKGPALDKCKKEAVTDALKRALRNFGNLMGNCLYDK 157
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BLAST of mRNA_C-linearis_contig87.16310.1 vs. uniprot
Match: J5SM22_TRIAS (DNA strand annealing protein n=1 Tax=Trichosporon asahii var. asahii (strain ATCC 90039 / CBS 2479 / JCM 2466 / KCTC 7840 / NBRC 103889/ NCYC 2677 / UAMH 7654) TaxID=1186058 RepID=J5SM22_TRIAS)

HSP 1 Score: 107 bits (268), Expect = 1.300e-21
Identity = 60/120 (50.00%), Postives = 78/120 (65.00%), Query Frame = 1 
Query:  154 DQINSRPGGGGKQVKYLAGHTVFENTNKVFGFAGWDSSILHLSVDYQSDDGRFWMASATAIVRVSLGNGCGHEDVGNAHLKDRDKGEVLQRVKKAAVTDATKRALRLFGTQLGISMSDKE 513
            + I+ RPGGGG +  Y+ G        KVFGF GW SSI+ LS D++ +  R W+ S TAIVR++L +GC HEDVG+ H ++  KG      KK AVTDATKRAL+ FG  LG+ + DKE
Sbjct:   75 EYISQRPGGGGSKFTYVEGW-------KVFGFNGWSSSIVKLSTDFEGE--RVWI-SVTAIVRITLQDGCWHEDVGHGHCENM-KGRAAAIEKKEAVTDATKRALKTFGNVLGLCIYDKE 183
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BLAST of mRNA_C-linearis_contig87.16310.1 vs. uniprot
Match: A0A137P4J8_CONC2 (Rad52/22 double-strand break repair protein n=1 Tax=Conidiobolus coronatus (strain ATCC 28846 / CBS 209.66 / NRRL 28638) TaxID=796925 RepID=A0A137P4J8_CONC2)

HSP 1 Score: 101 bits (252), Expect = 2.070e-21
Identity = 53/122 (43.44%), Postives = 74/122 (60.66%), Query Frame = 1 
Query:  160 INSRPGGGGKQVKYLAGHTVFENTNKVFGFAGWDSSILHLSVDYQSD-DGRFWMASATAIVRVSLGNGCGHEDVG-NAHLKDRDKGEVLQRVKKAAVTDATKRALRLFGTQLGISMSDKEGL 519
            +++RPG GG ++ Y+ G  V E  N++F F GW S I+ +  DY  + DGR W      ++RVSL +G  HEDVG  +   +R KG  L++ +K A TDA KRALRLFG  LG  +  K+ L
Sbjct:   34 VSTRPGPGGSKLSYIEGWKVIEKANEIFNFDGWSSQIIKMETDYVDNIDGR-WSVGINIVIRVSLVSGTYHEDVGFGSATNERSKGAALEKARKEASTDALKRALRLFGNNLGNCIYSKKYL 154
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BLAST of mRNA_C-linearis_contig87.16310.1 vs. uniprot
Match: D8QED5_SCHCM (Rad52-like protein (Fragment) n=1 Tax=Schizophyllum commune (strain H4-8 / FGSC 9210) TaxID=578458 RepID=D8QED5_SCHCM)

HSP 1 Score: 99.8 bits (247), Expect = 3.920e-21
Identity = 51/122 (41.80%), Postives = 78/122 (63.93%), Query Frame = 1 
Query:  154 DQINSRPGGGGKQVKYLAGHTVFENTNKVFGFAGWDSSILHLSVDY--QSDDGRFWMASATAIVRVSLGNGCGHEDVGNAHLKDR-DKGEVLQRVKKAAVTDATKRALRLFGTQLGISMSDK 510
            + +++RPGGGG ++ Y AG  +    N+VFGF GW ++++ L+VD+  ++  GRF     T+I+RV+L +G  HED+G     +  +KG+ L + KK AVTD  KRALR FG  +G  + DK
Sbjct:    8 EYLSTRPGGGGSKLTYTAGWQIINLANEVFGFNGWSTNVISLTVDFCDETKSGRF-STGVTSILRVTLRDGAFHEDIGYGQADNMPNKGQALDKAKKEAVTDGMKRALRHFGNVVGNCLYDK 128
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig87.16310.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FGZ9_ECTSI3.470e-9276.65DNA repair protein RAD52 homolog n=1 Tax=Ectocarpu... [more]
A0A6H5JZ89_9PHAE4.940e-4079.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K4D8_9PHAE6.970e-3974.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI000644DBF21.010e-2238.22hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
A0A2P6NIG4_9EUKA1.730e-2236.47Uncharacterized protein n=1 Tax=Planoprotostelium ... [more]
A0A0A1UCM6_ENTIV3.080e-2238.55DNA repair and recombination protein RAD52, putati... [more]
A0A166WH72_9AGAM3.260e-2245.08Recombination protein Rad52 (Fragment) n=1 Tax=Fib... [more]
J5SM22_TRIAS1.300e-2150.00DNA strand annealing protein n=1 Tax=Trichosporon ... [more]
A0A137P4J8_CONC22.070e-2143.44Rad52/22 double-strand break repair protein n=1 Ta... [more]
D8QED5_SCHCM3.920e-2141.80Rad52-like protein (Fragment) n=1 Tax=Schizophyllu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig87contigC-linearis_contig87:642061..646994 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score305.8
Seed ortholog evalue4.1e-80
Seed eggNOG ortholog2880.D7FGZ9
Preferred nameRAD52
KEGG koko:K01288,ko:K10873
KEGG Pathwayko03440,map03440
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000018,GO:0000150,GO:0000228,GO:0000278,GO:0000280,GO:0000709,GO:0000722,GO:0000723,GO:0000724,GO:0000725,GO:0000726,GO:0000727,GO:0000729,GO:0000730,GO:0000733,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003690,GO:0003697,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006275,GO:0006277,GO:0006281,GO:0006282,GO:0006301,GO:0006302,GO:0006310,GO:0006312,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006979,GO:0006996,GO:0007049,GO:0007127,GO:0007131,GO:0007530,GO:0007531,GO:0007533,GO:0008150,GO:0008152,GO:0008156,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010520,GO:0010556,GO:0010558,GO:0010564,GO:0010605,GO:0010639,GO:0010792,GO:0010946,GO:0010947,GO:0010948,GO:0016043,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0022402,GO:0022413,GO:0022414,GO:0022607,GO:0030154,GO:0031297,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032200,GO:0032392,GO:0032502,GO:0032505,GO:0032991,GO:0032993,GO:0033043,GO:0033260,GO:0033554,GO:0034599,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0035825,GO:0035861,GO:0040020,GO:0042221,GO:0042592,GO:0042802,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043392,GO:0043933,GO:0044085,GO:0044092,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044464,GO:0044786,GO:0045002,GO:0045003,GO:0045005,GO:0045027,GO:0045128,GO:0045165,GO:0045786,GO:0045835,GO:0045910,GO:0045934,GO:0046483,GO:0048285,GO:0048519,GO:0048523,GO:0048583,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051098,GO:0051100,GO:0051101,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051259,GO:0051260,GO:0051276,GO:0051321,GO:0051445,GO:0051447,GO:0051716,GO:0051726,GO:0051783,GO:0051784,GO:0060249,GO:0060255,GO:0060631,GO:0061982,GO:0065003,GO:0065004,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070887,GO:0071103,GO:0071704,GO:0071824,GO:0071840,GO:0071897,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0090329,GO:0090734,GO:0090735,GO:0097159,GO:0097617,GO:0110026,GO:0110027,GO:0110029,GO:0140013,GO:0140097,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902298,GO:1902969,GO:1903046,GO:1903047,GO:1990426,GO:1990505,GO:1990814,GO:2000104,GO:2000112,GO:2000113,GO:2000241,GO:2000242,GO:2000819,GO:2001020
EggNOG free text desc.double-strand break repair via single-strand annealing
EggNOG OGsCOG5055@1,KOG4141@2759
EC3.4.16.6
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko03400
Exons8
Model size1695
Cds size1695
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig87.16310.1prot_C-linearis_contig87.16310.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig87 642061..646994 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930673.354649-CDS-C-linearis_contig87:642060..6422091622930673.354649-CDS-C-linearis_contig87:642060..642209Chordaria linearis ClinC8C monoicousCDSC-linearis_contig87 642061..642209 +
1690881189.5778658-CDS-C-linearis_contig87:642060..6422091690881189.5778658-CDS-C-linearis_contig87:642060..642209Chordaria linearis ClinC8C monoicousCDSC-linearis_contig87 642061..642209 +
1622930673.3703117-CDS-C-linearis_contig87:643209..6432521622930673.3703117-CDS-C-linearis_contig87:643209..643252Chordaria linearis ClinC8C monoicousCDSC-linearis_contig87 643210..643252 +
1690881189.5966828-CDS-C-linearis_contig87:643209..6432521690881189.5966828-CDS-C-linearis_contig87:643209..643252Chordaria linearis ClinC8C monoicousCDSC-linearis_contig87 643210..643252 +
1622930673.384485-CDS-C-linearis_contig87:643594..6436931622930673.384485-CDS-C-linearis_contig87:643594..643693Chordaria linearis ClinC8C monoicousCDSC-linearis_contig87 643595..643693 +
1690881189.6056423-CDS-C-linearis_contig87:643594..6436931690881189.6056423-CDS-C-linearis_contig87:643594..643693Chordaria linearis ClinC8C monoicousCDSC-linearis_contig87 643595..643693 +
1622930673.4018054-CDS-C-linearis_contig87:644309..6444531622930673.4018054-CDS-C-linearis_contig87:644309..644453Chordaria linearis ClinC8C monoicousCDSC-linearis_contig87 644310..644453 +
1690881189.6147923-CDS-C-linearis_contig87:644309..6444531690881189.6147923-CDS-C-linearis_contig87:644309..644453Chordaria linearis ClinC8C monoicousCDSC-linearis_contig87 644310..644453 +
1622930673.4151862-CDS-C-linearis_contig87:644929..6450071622930673.4151862-CDS-C-linearis_contig87:644929..645007Chordaria linearis ClinC8C monoicousCDSC-linearis_contig87 644930..645007 +
1690881189.6237118-CDS-C-linearis_contig87:644929..6450071690881189.6237118-CDS-C-linearis_contig87:644929..645007Chordaria linearis ClinC8C monoicousCDSC-linearis_contig87 644930..645007 +
1622930673.4276574-CDS-C-linearis_contig87:645320..6462891622930673.4276574-CDS-C-linearis_contig87:645320..646289Chordaria linearis ClinC8C monoicousCDSC-linearis_contig87 645321..646289 +
1690881189.632517-CDS-C-linearis_contig87:645320..6462891690881189.632517-CDS-C-linearis_contig87:645320..646289Chordaria linearis ClinC8C monoicousCDSC-linearis_contig87 645321..646289 +
1622930673.439167-CDS-C-linearis_contig87:646703..6467881622930673.439167-CDS-C-linearis_contig87:646703..646788Chordaria linearis ClinC8C monoicousCDSC-linearis_contig87 646704..646788 +
1690881189.6419356-CDS-C-linearis_contig87:646703..6467881690881189.6419356-CDS-C-linearis_contig87:646703..646788Chordaria linearis ClinC8C monoicousCDSC-linearis_contig87 646704..646788 +
1622930673.4632902-CDS-C-linearis_contig87:646866..6469941622930673.4632902-CDS-C-linearis_contig87:646866..646994Chordaria linearis ClinC8C monoicousCDSC-linearis_contig87 646867..646994 +
1690881189.6518812-CDS-C-linearis_contig87:646866..6469941690881189.6518812-CDS-C-linearis_contig87:646866..646994Chordaria linearis ClinC8C monoicousCDSC-linearis_contig87 646867..646994 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig87.16310.1

>prot_C-linearis_contig87.16310.1 ID=prot_C-linearis_contig87.16310.1|Name=mRNA_C-linearis_contig87.16310.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=565bp
MEPASYNSERQGSGQGGQWVFGTDKFTKEDNARIQKASQNYYYYYATARF
WDQINSRPGGGGKQVKYLAGHTVFENTNKVFGFAGWDSSILHLSVDYQSD
DGRFWMASATAIVRVSLGNGCGHEDVGNAHLKDRDKGEVLQRVKKAAVTD
ATKRALRLFGTQLGISMSDKEGLKDAERTHKQNQKELKANQQRDAKRQQQ
QQQQQQQQQSPPQAPPPPPPPPPQQQQQQQQQQQQQNQQHHHYPQQQQQQ
QQQQSPPQAPPPPPPPPPQQQQQQQQQQQQQQNQQHHHYPQRQQQQQQQQ
QQQQQQQQRARGPGAKPQTPQQRQQHQQSTPGSTIAAANDGGASSSRAIP
PKSPLAASPPAAAVAAIATGPRVILRESSPNKTLQSGGDASGGGGRGGGS
SGRELLAEMAARRNNSPAFDYTVADGDGYVGGEAAISAPAGPAAPELLPT
EGASATAAPAAVGGAGGTEERGEPGGGDSGYIGGGDGDEFGLSQDFELAT
LMEIDSAIHRHTTSGLSAGSGDGFPGGAAIGIGSGIGSGGGRFGGGGGQV
MPRRQQGYNNNNNNN
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mRNA from alignment at C-linearis_contig87:642061..646994+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig87.16310.1 ID=mRNA_C-linearis_contig87.16310.1|Name=mRNA_C-linearis_contig87.16310.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4934bp|location=Sequence derived from alignment at C-linearis_contig87:642061..646994+ (Chordaria linearis ClinC8C monoicous)
ATGGAACCAGCGTCCTACAACTCCGAGCGTCAGGGATCTGGTCAAGGGGG
GCAATGGGTGTTCGGGACCGACAAGTTTACGAAGGAAGACAATGCGAGAA
TCCAAAAGGCGAGCCAAAATTATTATTATTATTATGCAACTGCCCGTTTG
TTTTTTTAGCGTCTCCGATGGACGAGTACAGCAGTATCATGTTCCCCGTG
TGCTCTGTACCTGTTGGCTCTCTCTGTCCCGCCAAAGCCTGTGCTGAACG
GGTAACAACAGTTGGGTTCCATTGTTCTATTGCAAGCTGTACAAACCGAG
GGTTTCGAAAGCTTGCTTCTTGCTGCCTGAGACTAGTCGACGCTGCTGCT
TCACCGTGATGTGCTCCGAACACAACAATGCTACGGGGTACTGCTGTAGC
TTATGTCCATGGCAGAGCGCATATCCCATCCATCGCCATCCGCTGTCGGT
AGGCTGCAGCTGCGGTTGACCTCTTTGTCACTCGCTCATCGCGTTGAGTG
CCTTCAGCAATCCCCGAAACCGCCGTACGTTGCTCGGGGTGCTGCGATTC
AAAATCTGACATATTCGCGCCATAAATTTATCGCGAATTCGTTTGCAGAC
TACAGTACGTACACAGCATTAGGAGCAGTATGCATCTCGACAAAAGGAGC
CCCAGGCGAAAGGCCGCGCCAAAATCATCTGTCCGGCCTGTCTGTCTGTC
TGTCTGTCTATCTGGCTGGCTGGCTGGCCGGCTCTTTGCCCAGCAGGCTC
ACAGTTCACTATGAGAACCAGTCAAGTTTTCGATCCCCTGCAGCTGCCTA
GTGGTCGGGTCCCGTCGTCTTTCCTTTCGGTTGCTCCCAGCAGGCACGCA
ACGCAACGCCCGCTTCTCCTTTCCCCACCCGTCCCTCTATGTATATGTAT
ACACCTGCTATAGTCTAAACATCGATGAATACTGGCGGCTGAGCACGCCC
CCGATTGAGCGGATGATGCCTTGTGCACGGTTCGTCTGCAGCAGTAGGGT
GCTGCTGCTGCTGTAGCACCTGGATTCCCGCGGCGGCGTGAGGCTACACA
TGCTCGTGAGTTCGGGCAGGGCGTCTTATTGACGCGCGCCCACTTTCTTG
GCTGCCTTGCATTTGCTCGTGTCCCGCAGGCGCTTAACACGGCCCTGAGC
TGGGACCAAATCAACTCCAGGCCAGGCGGTGGAGGAAAGCAGGTGCGCGG
CGGGCGGGAGCGGTACCTATCTCATATCACAGAGCTTGCACATGGTGTCG
GGCTGTGGTGTGCGCGTTACGCAAAAAAGACAAAATAAAATGCTCGAGTG
GAGGAAGAGACCTACGTAACTAGAACCCACCAGTTTCAAGTAATCAAGTT
CGTCCTAATTTTTCGCTGTTCCGAAGAGCTGCTGGCGACGCGCGCTAAGT
ATAATCCTAGGTAGTCTAGAGTCTAGCTGTCAAGCTCCACGGTCTCCTTG
TTTTTCCGCCCGCGACCAATCGACTCAAGAAAGTGAAACGCTCCTTTGCT
GGTTGGTCCCGTCTGGTTGCACTGTTGACGTTAGGTCAAATACTTGGCGG
GACACACGGTTTTCGAGAACACCAACAAGGTGTTCGGTTTCGCCGGCTGG
GACTCGTCCATCCTTCACCTCAGCGTCGACTACGTGAGTGGGCGAACGGG
CAGGACGGGCAGGACGGGGGCGGGGAGGGGCGTGAGGGCGGCGTATCGTT
TCGCCTTGCTTATTTTGCTTGTCTGAACGTTGAATGAATGTGTACATCGT
CACCTTTCGAGACATCCGGAGCGCCCTTCCTGTACTCCTAAATTTAGGAG
GCAACGCCAACGCGTGGTTCATTCGTTTCTCCTAACCCCGCCGGCATCGG
CATGATTTACCGCTCATTTGCTGCGCTTTTTCGGCATGCTTCCCAGACTC
GAAAGCGTGTTTACCGCACAACAACCATGCGGTGCTGGTGGTGAAACGGC
GGGGCGTTGTGCGTAGATGTTGACTACAAATAGGCAACGCGCAAGTATCC
ACATGGTGCAAAATATGTTTCGGTGCTTCATGTGTGGTTCGGGAAGTGAA
CGCCGTTGCTAGATCATCCAGAGAAGCCATGACATACTTTCTCGATACTG
GTCAAGCTTAGCTTTCGACAACTCTGTCAGGGCTCGTGGTGGTGGTATCA
TTAGAGGTAGTCACTCCTGTCAAAGCTTCAGCAGTAGATGAGTGTTGCTG
GCGGACAAATGAACTTGAAAGGTTAACGTTTCCTCCCCTTCAGGTGGAGC
AGAGCGACGATGGCAGGTTTTGGATGGCTTCCGCGACTGCGATCGTTAGG
GTTTCGCTGGGCAACGGCTGCGGACACGAAGACGTCGGCAACGCGCACCT
CAAGGACAGGGATAAGGGGGAGGTCCTTCAGAGGGTCAAAAAGGTGTGCA
GTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGCTGCTGGTGCTGATGCCGG
CCTTACAACTCTGAACACTGGCACCATGCACCTTGAGGACAGTTGAGAGG
CACGACCTAGGCAGGTTGACCCCTTCGGAAGGTCAACAAACCTGCAGATA
GAGGCTGTCGTTCACTTTCATCCTCTGTTCTGAGCGATCCTTCACCTTGC
CGACTTTTGGTCATGCTGCTGGCAGGATCCGTCGGTTTTGTAGGTATACG
TCGAGGATGGTAGAACACGGGTCCTGACTTCTTTGCGTGAGACTGTTGCT
ACCTACACCAACATGTCCTTCCTGCTTTTCTCTGTGTTTCCTGTTAGTTG
ACACTAAGGTATGCCCCGTTATCCAGGAAGGTATCTACATCGATGCCATA
CTAGTCTAAAGCTGACCTATCTGCTACTTTGCCGTGCCGCCGCCGCCGCC
GCCGCCGCCGCCGCCGCAGGCCGCCGTGACAGACGCGACAAAGAGAGCGC
TGCGTCTCTTTGGAACCCAGCTGGGAATCAGCATGTCTGACAAAGAGGTG
GGAGGGGTGTGCGCCCGCCTGTGTTGGCGTACCCCCGCTCTCTCTCTCTG
CCAAGTACGGATCTTTTGCCAGTTTTGTTTCCGTCATCTCTTCGCCGCCT
TCTTGCGCCTTTTGATACCCCACTGGCAGGGCTGGCGGCACGAAACACCT
GGTGTGTTTTCGTTTTTTCGCGCCACCACTGCCAGGACTATGTAGAACCT
CCGGACGTGTGTGAAATAGCTTGCACACCCTCTCCGCCGTGCACATGTTG
CAAATTCACTCGGAAATTTGTTCTGTTTTTGCTTTTGCGGGGCTCTTGCT
TTCATTCCAGGGGCTCAAGGACGCGGAGCGCACCCACAAGCAGAACCAGA
AGGAGCTCAAGGCAAATCAGCAGCGGGACGCCAAAAGGCAGCAGCAGCAG
CAGCAGCAGCAGCAACAACAACAGTCGCCACCGCAAGCACCGCCGCCGCC
GCCGCCGCCGCCGCCGCAGCAGCAGCAGCAGCAGCAGCAACAGCAACAAC
AGCAAAATCAGCAACACCACCACTACCCACAGCAGCAGCAGCAGCAACAA
CAACAACAGTCGCCACCGCAAGCACCGCCGCCGCCGCCGCCGCCGCCGCC
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAACAGCAGAATCAGC
AACACCACCACTACCCACAGCGGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAACAACAACAGCAGCAGAGAGCACGAGGGCCGGGCGCAAAGCCACA
GACCCCACAGCAGAGACAACAGCACCAACAATCGACTCCCGGCTCCACCA
TCGCCGCCGCCAACGATGGTGGTGCTTCTAGCTCGCGAGCGATCCCGCCG
AAATCCCCTCTTGCAGCATCACCCCCTGCTGCTGCGGTGGCGGCGATCGC
GACAGGACCCAGGGTTATCCTGCGCGAATCTTCCCCGAACAAAACCCTTC
AAAGCGGCGGTGACGCCAGCGGCGGCGGCGGGAGGGGCGGCGGTAGCAGC
GGCCGCGAGTTGCTGGCGGAGATGGCTGCGCGGAGGAACAACAGCCCCGC
GTTCGACTACACGGTAGCTGACGGTGACGGCTATGTCGGCGGTGAGGCGG
CCATCTCTGCGCCGGCCGGCCCCGCTGCACCGGAACTGCTGCCTACGGAG
GGGGCATCAGCGACGGCAGCGCCGGCGGCGGTCGGAGGAGCAGGAGGAAC
GGAAGAGAGAGGCGAGCCCGGCGGCGGCGACAGCGGCTACATCGGTGGAG
GCGATGGAGACGAGTTCGGGCTGTCGCAGGTGCGCGAGGTTCGGAAAGCT
TGCCGGCCGGAGATCTTTCAAATATGTTTTGTTTGCTCGGCTGCTGCTGT
TGCGCTGTTGTTGTTGTTGTTGTTGTCGTCGTCGTTGTCGTTGTTGTTCG
TTTCGTTGCTGGATCTCGTAGTGCTTGAGAGCTGCTTTCATTTTTTGTGT
CCGGAGGCTAGGTGTGCTGCCGATTGGTATCCCGAAAACTTGACGACAGG
TGTATCTCTTTGTCTCTCTGCTCGTTAGTCTCCATCGCTTCCTGGGGTAC
GTGTGAATGGGGCCGTTTCTGACAGACCCGTCCCACCTTTGTCAAAGGTC
TTAAAAAAGAAAGAAAGAAAAACTTCCCGAACAAATTACGTACCTTTCTC
CCATCACGACTGTCCACCCCCCCCCCGAATGTGCCCACTCCAGGACTTCG
AATTGGCAACGTTGATGGAAATCGACTCGGCGATCCACCGGCACACCACA
TCTGGCCTCTCCGCGGGCAGCGGTGACGGTGCCGACGGCATTTGCGATGG
TAACGGCGGCGGCGTAAACGAGAACGTCGCGGGGGTGGGGACAGGGGTAG
GGGTAGGTTTCCCCGGCGGGGCGGCAATTGGTATTGGTAGTGGTATTGGT
AGTGGTGGTGGGAGGTTTGGAGGAGGAGGTGGGCAGGTGATGCCTCGGCG
GCAGCAGGGATATAACAACAACAACAACAACAAC
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Coding sequence (CDS) from alignment at C-linearis_contig87:642061..646994+

>mRNA_C-linearis_contig87.16310.1 ID=mRNA_C-linearis_contig87.16310.1|Name=mRNA_C-linearis_contig87.16310.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=3390bp|location=Sequence derived from alignment at C-linearis_contig87:642061..646994+ (Chordaria linearis ClinC8C monoicous)
ATGGAACCAGCGTCCTACAACTCCGAGCGTCAGGGATCTGGTCAAGGGGG
GCAATGGGTGTTCGGGACCGACAAGTTTACGAAGGAAGACAATGCGAGAA
TCCAAAAGGCGAGCCAAAATTATTATTATTATTATGCAACTGCCCGTTTA
TGGAACCAGCGTCCTACAACTCCGAGCGTCAGGGATCTGGTCAAGGGGGG
CAATGGGTGTTCGGGACCGACAAGTTTACGAAGGAAGACAATGCGAGAAT
CCAAAAGGCGAGCCAAAATTATTATTATTATTATGCAACTGCCCGTTTCT
GGGACCAAATCAACTCCAGGCCAGGCGGTGGAGGAAAGCAGCTGGGACCA
AATCAACTCCAGGCCAGGCGGTGGAGGAAAGCAGGTCAAATACTTGGCGG
GACACACGGTTTTCGAGAACACCAACAAGGTGTTCGGTTTCGCCGGCTGG
GACTCGTCCATCCTTCACCTCAGCGTCGACTACGTCAAATACTTGGCGGG
ACACACGGTTTTCGAGAACACCAACAAGGTGTTCGGTTTCGCCGGCTGGG
ACTCGTCCATCCTTCACCTCAGCGTCGACTACCAGAGCGACGATGGCAGG
TTTTGGATGGCTTCCGCGACTGCGATCGTTAGGGTTTCGCTGGGCAACGG
CTGCGGACACGAAGACGTCGGCAACGCGCACCTCAAGGACAGGGATAAGG
GGGAGGTCCTTCAGAGGGTCAAAAAGCAGAGCGACGATGGCAGGTTTTGG
ATGGCTTCCGCGACTGCGATCGTTAGGGTTTCGCTGGGCAACGGCTGCGG
ACACGAAGACGTCGGCAACGCGCACCTCAAGGACAGGGATAAGGGGGAGG
TCCTTCAGAGGGTCAAAAAGGCCGCCGTGACAGACGCGACAAAGAGAGCG
CTGCGTCTCTTTGGAACCCAGCTGGGAATCAGCATGTCTGACAAAGAGGC
CGCCGTGACAGACGCGACAAAGAGAGCGCTGCGTCTCTTTGGAACCCAGC
TGGGAATCAGCATGTCTGACAAAGAGGGGCTCAAGGACGCGGAGCGCACC
CACAAGCAGAACCAGAAGGAGCTCAAGGCAAATCAGCAGCGGGACGCCAA
AAGGCAGCAGCAGCAGCAGCAGCAGCAGCAACAACAACAGTCGCCACCGC
AAGCACCGCCGCCGCCGCCGCCGCCGCCGCCGCAGCAGCAGCAGCAGCAG
CAGCAACAGCAACAACAGCAAAATCAGCAACACCACCACTACCCACAGCA
GCAGCAGCAGCAACAACAACAACAGTCGCCACCGCAAGCACCGCCGCCGC
CGCCGCCGCCGCCGCCGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAG
CAACAGCAGAATCAGCAACACCACCACTACCCACAGCGGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAACAACAACAGCAGCAGAGAGCACGAGGGC
CGGGCGCAAAGCCACAGACCCCACAGCAGAGACAACAGCACCAACAATCG
ACTCCCGGCTCCACCATCGCCGCCGCCAACGATGGTGGTGCTTCTAGCTC
GCGAGCGATCCCGCCGAAATCCCCTCTTGCAGCATCACCCCCTGCTGCTG
CGGTGGCGGCGATCGCGACAGGACCCAGGGTTATCCTGCGCGAATCTTCC
CCGAACAAAACCCTTCAAAGCGGCGGTGACGCCAGCGGCGGCGGCGGGAG
GGGCGGCGGTAGCAGCGGCCGCGAGTTGCTGGCGGAGATGGCTGCGCGGA
GGAACAACAGCCCCGCGTTCGACTACACGGTAGCTGACGGTGACGGCTAT
GTCGGCGGTGAGGCGGCCATCTCTGCGCCGGCCGGCCCCGCTGCACCGGA
ACTGCTGCCTACGGAGGGGGCATCAGCGACGGCAGCGCCGGCGGCGGTCG
GAGGAGCAGGAGGAACGGAAGAGAGAGGCGAGCCCGGCGGCGGCGACAGC
GGCTACATCGGTGGAGGCGATGGAGACGAGTTCGGGCTGTCGCAGGGGCT
CAAGGACGCGGAGCGCACCCACAAGCAGAACCAGAAGGAGCTCAAGGCAA
ATCAGCAGCGGGACGCCAAAAGGCAGCAGCAGCAGCAGCAGCAGCAGCAA
CAACAACAGTCGCCACCGCAAGCACCGCCGCCGCCGCCGCCGCCGCCGCC
GCAGCAGCAGCAGCAGCAGCAGCAACAGCAACAACAGCAAAATCAGCAAC
ACCACCACTACCCACAGCAGCAGCAGCAGCAACAACAACAACAGTCGCCA
CCGCAAGCACCGCCGCCGCCGCCGCCGCCGCCGCCGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAACAGCAACAGCAGAATCAGCAACACCACCACTACC
CACAGCGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAACAACAG
CAGCAGAGAGCACGAGGGCCGGGCGCAAAGCCACAGACCCCACAGCAGAG
ACAACAGCACCAACAATCGACTCCCGGCTCCACCATCGCCGCCGCCAACG
ATGGTGGTGCTTCTAGCTCGCGAGCGATCCCGCCGAAATCCCCTCTTGCA
GCATCACCCCCTGCTGCTGCGGTGGCGGCGATCGCGACAGGACCCAGGGT
TATCCTGCGCGAATCTTCCCCGAACAAAACCCTTCAAAGCGGCGGTGACG
CCAGCGGCGGCGGCGGGAGGGGCGGCGGTAGCAGCGGCCGCGAGTTGCTG
GCGGAGATGGCTGCGCGGAGGAACAACAGCCCCGCGTTCGACTACACGGT
AGCTGACGGTGACGGCTATGTCGGCGGTGAGGCGGCCATCTCTGCGCCGG
CCGGCCCCGCTGCACCGGAACTGCTGCCTACGGAGGGGGCATCAGCGACG
GCAGCGCCGGCGGCGGTCGGAGGAGCAGGAGGAACGGAAGAGAGAGGCGA
GCCCGGCGGCGGCGACAGCGGCTACATCGGTGGAGGCGATGGAGACGAGT
TCGGGCTGTCGCAGGACTTCGAATTGGCAACGTTGATGGAAATCGACTCG
GCGATCCACCGGCACACCACATCTGGCCTCTCCGCGGGCAGCGGTGACGG
ACTTCGAATTGGCAACGTTGATGGAAATCGACTCGGCGATCCACCGGCAC
ACCACATCTGGCCTCTCCGCGGGCAGCGGTGACGGTTTCCCCGGCGGGGC
GGCAATTGGTATTGGTAGTGGTATTGGTAGTGGTGGTGGGAGGTTTGGAG
GAGGAGGTGGGCAGGTGATGCCTCGGCGGCAGCAGGGATATAACAACAAC
AACAACAACAACGTTTCCCCGGCGGGGCGGCAATTGGTATTGGTAGTGGT
ATTGGTAGTGGTGGTGGGAGGTTTGGAGGAGGAGGTGGGCAGGTGATGCC
TCGGCGGCAGCAGGGATATAACAACAACAACAACAACAAC
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