prot_C-linearis_contig87.16280.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig87.16280.1
Unique Nameprot_C-linearis_contig87.16280.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length72
Homology
[Close]
BLAST of mRNA_C-linearis_contig87.16280.1 vs. uniprot
Match: A0A6H5JZF5_9PHAE (GSDH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZF5_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 9.790e-17
Identity = 36/59 (61.02%), Postives = 44/59 (74.58%), Query Frame = 0 
Query:    1 QAVQNNEFNPICSGSDRSPFEFPIYEYCHLSYLAT-DTAFTDGVDICGDREVEGNAIVG 58
            +AV+NNE+NP C G DRS F FP+YEYCH  Y +  D  FT GVDICGDR + GNA++G
Sbjct:  364 EAVENNEYNPPCDGVDRSGFTFPLYEYCHPDYSSVGDDEFTAGVDICGDRVLLGNAVIG 422
[Close]
BLAST of mRNA_C-linearis_contig87.16280.1 vs. uniprot
Match: D7G4P3_ECTSI (Glucose sorbosone dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4P3_ECTSI)

HSP 1 Score: 79.3 bits (194), Expect = 1.260e-15
Identity = 35/59 (59.32%), Postives = 43/59 (72.88%), Query Frame = 0 
Query:    1 QAVQNNEFNPICSGSDRSPFEFPIYEYCHLSYLAT-DTAFTDGVDICGDREVEGNAIVG 58
            +AV++NEFNP C G  RS F FP+YEYCH  Y +T D  FT G DICGDR + GNA++G
Sbjct:  427 EAVEDNEFNPACDGISRSGFTFPLYEYCHPDYQSTGDDEFTAGNDICGDRVLLGNAVIG 485
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig87.16280.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JZF5_9PHAE9.790e-1761.02GSDH domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7G4P3_ECTSI1.260e-1559.32Glucose sorbosone dehydrogenase n=1 Tax=Ectocarpus... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig87contigC-linearis_contig87:132016..133520 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig87.16280.1mRNA_C-linearis_contig87.16280.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig87 131517..133520 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig87.16280.1 ID=prot_C-linearis_contig87.16280.1|Name=mRNA_C-linearis_contig87.16280.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=72bp
QAVQNNEFNPICSGSDRSPFEFPIYEYCHLSYLATDTAFTDGVDICGDRE
VEGNAIVGSCTSLSRTTTACG*
back to top