prot_C-linearis_contig86.16239.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_C-linearis_contig86.16239.1
Unique Name	prot_C-linearis_contig86.16239.1
Type	polypeptide
Organism	Chordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length	593

Homology

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BLAST of mRNA_C-linearis_contig86.16239.1 vs. uniprot
Match: D7FZT4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZT4_ECTSI)

HSP 1 Score: 222 bits (565), Expect = 4.200e-62
Identity = 293/609 (48.11%), Postives = 322/609 (52.87%), Query Frame = 0

Query:    1 MSQTRVNLAAAKRELAERQDEANLCMVELKHAQEIMAAGGTGPKVLSVTVQEVFGAITVDRVAVRPGTTPAQEKVVVEGIPCSFTLESAAESFDLVLMAENKTDT----SAVGMRVGVPKESSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPEAEXXXXXXXXXXXXXXXXXXXXSEKADGDAQEEVFHDAAGPAEAXXGATPDSDETLTTAAAAAATQALTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGVASAVAEEAE--EXXXXXXXXXXXXXXVVREGSDGSAQALKDKAGEDATAXXXXXXXXXXXXXALATANGDVAXXXXXXXXX--------LGCSSGTTEVVVPSSELDFTLSQGQWRYLEADSTPMHGDDAVEVTKGIRFSTSLKALDSREDDERISELSTKFDEAQRRVQSAEAMIKKLQPSSAGTSSRKKSGAG---GGVRKSALXXXXXXXXXXXXXXXXXXXXXAGALTAAIGTAVVRTKAVGALAWGSRNLFLFAAAVAAMHLHGDYLAV 592
            MSQ+RVNLA AKRELAER+DEANLCMVELKHAQE++AAGGTGPKVLSV                           V +GIPC+F L++A ESFDLVLMAEN +      SA   +  V +E S+                            XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                       SE+  G+  EE FHD +G A                A  A A +A                                                    AG   AV  EA   E XXXXXXXXXXXXX           A+   AG     XXXXXXXXXXXXX          XXXXXXXXX        LGCS+GTTEVVVPSSELDF LSQGQWRYLEADSTP+HGD AVEVTKGIRFSTSLKA+DSREDD+RI ELS K  +A+RRV++AEAMIKKLQPSSA               GVRKSAL                     AGAL+AA+G A  + K  GALAWG+RNL  FAAAVAAMHLHGDYLAV
Sbjct:    1 MSQSRVNLATAKRELAERRDEANLCMVELKHAQEVLAAGGTGPKVLSV---------------------------VAQGIPCTFPLDAAVESFDLVLMAENDSGAGATKSAAVDQASVSQEDSSQLAEAAAVAVPGDGHETDEVVISAEDAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXV--------------------------------------SEQ--GNDAEEEFHDDSGAA----------------APVADAAEA--------------------------------------------------PVAGETEAVGAEAGQGETXXXXXXXXXXXXXXXXXXXXXXXXAVGPVAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAALGCSTGTTEVVVPSSELDFKLSQGQWRYLEADSTPVHGDGAVEVTKGIRFSTSLKAVDSREDDDRIVELSEKLSDAERRVRAAEAMIKKLQPSSATAXXXXXXXXXXXXAGVRKSALKKSKGGTRAVKSDAAKRRGA-AGALSAAVGNAYGKAKTAGALAWGARNLVFFAAAVAAMHLHGDYLAV 475

The following BLAST results are available for this feature:

BLAST of mRNA_C-linearis_contig86.16239.1 vs. uniprot

BLAST of mRNA_C-linearis_contig86.16239.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
D7FZT4_ECTSI	4.200e-62	48.11	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 476..496
None	No IPR available	COILS	Coil	Coil	coord: 1..21

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C-linearis_contig86	contig	C-linearis_contig86:542352..547675 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_C-linearis_contig86.16239.1	mRNA_C-linearis_contig86.16239.1	Chordaria linearis ClinC8C monoicous	mRNA	C-linearis_contig86 541610..547727 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_C-linearis_contig86.16239.1 ID=prot_C-linearis_contig86.16239.1|Name=mRNA_C-linearis_contig86.16239.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=593bp
MSQTRVNLAAAKRELAERQDEANLCMVELKHAQEIMAAGGTGPKVLSVTV
QEVFGAITVDRVAVRPGTTPAQEKVVVEGIPCSFTLESAAESFDLVLMAE
NKTDTSAVGMRVGVPKESSAAATDGATAGPPPPPPAGGGGGGDSHETDEV
VISAEDAAEAVEAEAAAVTVSGGGEAAEEDTAAAAAAAAAASPAAASGLE
AEEEEKAPEAESTDAAASVSGDAAAAVAAAVSEKADGDAQEEVFHDAAGP
AEAAAGATPDSDETLTTAAAAAATQALTAEAAKAADPVAAEAAEAAEAKA
AVEEAAPASGSADEEAPPAAESTESAAPAGVASAVAEEAEEEGEDAAAAA
APAPAVVREGSDGSAQALKDKAGEDATATCANAAAAAAAAPALATANGDV
AAASPAAAAALGCSSGTTEVVVPSSELDFTLSQGQWRYLEADSTPMHGDD
AVEVTKGIRFSTSLKALDSREDDERISELSTKFDEAQRRVQSAEAMIKKL
QPSSAGTSSRKKSGAGGGVRKSALKKSKGGTRAAKSDAAKRKGGAAGALT
AAIGTAVVRTKAVGALAWGSRNLFLFAAAVAAMHLHGDYLAV*