prot_C-linearis_contig86.16198.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig86.16198.1
Unique Nameprot_C-linearis_contig86.16198.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length220
Homology
[Close]
BLAST of mRNA_C-linearis_contig86.16198.1 vs. uniprot
Match: D8LSE7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSE7_ECTSI)

HSP 1 Score: 88.2 bits (217), Expect = 1.410e-16
Identity = 38/44 (86.36%), Postives = 42/44 (95.45%), Query Frame = 0 
Query:    1 MTSFMYNACISHMSMCGRWQEALQVLDLMRAVDFPPDEFCVTAA 44
            MTSFMYNACISHMS CGRWQ+AL++L+LMRA DFPPDEFCVTAA
Sbjct:  162 MTSFMYNACISHMSSCGRWQQALEILELMRAADFPPDEFCVTAA 205
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig86.16198.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LSE7_ECTSI1.410e-1686.36Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 75..118
e-value: 1.4E-9
score: 38.0
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 183..209
e-value: 1.2E-5
score: 23.2
coord: 109..142
e-value: 6.9E-8
score: 30.2
coord: 77..107
e-value: 4.4E-8
score: 30.8
coord: 146..173
e-value: 3.6E-6
score: 24.8
coord: 5..38
e-value: 6.8E-7
score: 27.1
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 41..64
e-value: 0.29
score: 11.5
coord: 183..209
e-value: 1.2E-4
score: 22.0
coord: 145..173
e-value: 3.3E-6
score: 27.0
coord: 4..30
e-value: 0.0012
score: 19.0
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 2..36
score: 9.997
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 142..176
score: 9.514
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 181..211
score: 8.572
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 72..106
score: 11.137
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 37..71
score: 7.607
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 107..141
score: 11.882
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..102
e-value: 7.8E-23
score: 83.5
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 103..214
e-value: 3.3E-29
score: 104.2
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 86..172
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 4..70
coord: 73..209

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig86contigC-linearis_contig86:121278..123381 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig86.16198.1mRNA_C-linearis_contig86.16198.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig86 121278..123399 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig86.16198.1 ID=prot_C-linearis_contig86.16198.1|Name=mRNA_C-linearis_contig86.16198.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=220bp
MTSFMYNACISHMSMCGRWQEALQVLDLMRAVDFPPDEFCVTAAITACGR
AGQWQKSLDLLRALRAGGGRTTVRLMNAVVDACRKGRRWEKALEMLEDMR
SHGVTPDDFTYTAAIAACRQGGQWDKALELFREMPSAGVELTSIHYNVAI
AICGEGGQPEKAFELFREMQEAGDGTRYEINRVSYNTAMIACGEGGSWEL
ALKLFREMVPPPGDSAASTA
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf