mRNA_C-linearis_contig86.16198.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_C-linearis_contig86.16198.1
Unique Name	mRNA_C-linearis_contig86.16198.1
Type	mRNA
Organism	Chordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)

Homology

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BLAST of mRNA_C-linearis_contig86.16198.1 vs. uniprot
Match: D8LSE7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSE7_ECTSI)

HSP 1 Score: 92.8 bits (229), Expect = 4.210e-18
Identity = 40/46 (86.96%), Postives = 44/46 (95.65%), Query Frame = 1

Query:   13 LEMTSFMYNACISHMSMCGRWQEALQVLDLMRAVDFPPDEFCVTAA 150
            LEMTSFMYNACISHMS CGRWQ+AL++L+LMRA DFPPDEFCVTAA
Sbjct:  160 LEMTSFMYNACISHMSSCGRWQQALEILELMRAADFPPDEFCVTAA 205

The following BLAST results are available for this feature:

BLAST of mRNA_C-linearis_contig86.16198.1 vs. uniprot

BLAST of mRNA_C-linearis_contig86.16198.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
D8LSE7_ECTSI	4.210e-18	86.96	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C-linearis_contig86	contig	C-linearis_contig86:121278..123399 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	87.8
Seed ortholog evalue	6.8e-15
Seed eggNOG ortholog	2880.D8LSE7
Hectar predicted targeting category	other localisation
EggNOG free text desc.	endonuclease activity
EggNOG OGs	KOG4197@1,KOG4197@2759
Ec32 ortholog description	Tetratricopeptide-like helical domain
Ec32 ortholog	Ec-21_003410.1
COG Functional cat.	S
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
Exons	4
Model size	678
Cds size	660
Stop	0
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_C-linearis_contig86.16198.1	prot_C-linearis_contig86.16198.1	Chordaria linearis ClinC8C monoicous	polypeptide	C-linearis_contig86 121278..123381 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622930649.1088028-CDS-C-linearis_contig86:121277..121407	1622930649.1088028-CDS-C-linearis_contig86:121277..121407	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig86 121278..121407 -
1690881178.033567-CDS-C-linearis_contig86:121277..121407	1690881178.033567-CDS-C-linearis_contig86:121277..121407	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig86 121278..121407 -
1622930649.132194-CDS-C-linearis_contig86:121809..121961	1622930649.132194-CDS-C-linearis_contig86:121809..121961	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig86 121810..121961 -
1690881178.055261-CDS-C-linearis_contig86:121809..121961	1690881178.055261-CDS-C-linearis_contig86:121809..121961	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig86 121810..121961 -
1622930649.154734-CDS-C-linearis_contig86:122350..122551	1622930649.154734-CDS-C-linearis_contig86:122350..122551	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig86 122351..122551 -
1690881178.0668898-CDS-C-linearis_contig86:122350..122551	1690881178.0668898-CDS-C-linearis_contig86:122350..122551	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig86 122351..122551 -
1622930649.1714795-CDS-C-linearis_contig86:123204..123381	1622930649.1714795-CDS-C-linearis_contig86:123204..123381	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig86 123205..123381 -
1690881178.079284-CDS-C-linearis_contig86:123204..123381	1690881178.079284-CDS-C-linearis_contig86:123204..123381	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig86 123205..123381 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622930649.1967556-UTR-C-linearis_contig86:123381..123399	1622930649.1967556-UTR-C-linearis_contig86:123381..123399	Chordaria linearis ClinC8C monoicous	UTR	C-linearis_contig86 123382..123399 -
1690881178.0889256-UTR-C-linearis_contig86:123381..123399	1690881178.0889256-UTR-C-linearis_contig86:123381..123399	Chordaria linearis ClinC8C monoicous	UTR	C-linearis_contig86 123382..123399 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at C-linearis_contig86:121278..123399-
coding sequence from alignment at C-linearis_contig86:121278..123399-

protein sequence of mRNA_C-linearis_contig86.16198.1

>prot_C-linearis_contig86.16198.1 ID=prot_C-linearis_contig86.16198.1|Name=mRNA_C-linearis_contig86.16198.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=220bp
MTSFMYNACISHMSMCGRWQEALQVLDLMRAVDFPPDEFCVTAAITACGR
AGQWQKSLDLLRALRAGGGRTTVRLMNAVVDACRKGRRWEKALEMLEDMR
SHGVTPDDFTYTAAIAACRQGGQWDKALELFREMPSAGVELTSIHYNVAI
AICGEGGQPEKAFELFREMQEAGDGTRYEINRVSYNTAMIACGEGGSWEL
ALKLFREMVPPPGDSAASTA

mRNA from alignment at C-linearis_contig86:121278..123399-

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_C-linearis_contig86.16198.1 ID=mRNA_C-linearis_contig86.16198.1|Name=mRNA_C-linearis_contig86.16198.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2122bp|location=Sequence derived from alignment at C-linearis_contig86:121278..123399- (Chordaria linearis ClinC8C monoicous)
CACCCGAAGAAGCTGGAGATGACCTCGTTTATGTACAACGCGTGCATCAG
CCACATGTCCATGTGCGGGCGCTGGCAGGAGGCGCTCCAGGTGCTGGACC
TCATGAGGGCCGTGGACTTCCCCCCCGACGAGTTCTGCGTCACCGCCGCG
ATCACCGCGTGCGGGAGGGCGGGGCAGTGGCAGAAGTCCTTGGACGTGAG
TTTTTTTTCTTTTTTCGTTTCTTCCCCCTGCTGCTTTTGTTTGGTTTGGG
CCTAGGCTGGAGCTTTTTTTTTTTTTTTGTCATCCAGCGGACACGGCAAA
AAACTCCGTCAGCTCACAACGCCTCGCCAACAAAGTTAGCACGTGTTCCG
ATTTAATTCCTGTCGAAAAACACGACGCTGTCCTTGGAGCAACCCATCAG
ACGCGAACATGTCGGCTTGTTTTACAGACTATGCATTGCGAATTGACTCC
GTAGAATTAGGCTTGCCTCGAGTTTTTTTTGTCCCTGTGGTTTCTTTGCG
GGTTTCATTAGTACATATTGGATTGCGATCGTCTCCCTGTGCCTCGCGTG
TGCGCGGTGACGTCGGCGGCTTAGCGAATGCGGCGCAGCATGGGGTCGTG
TCTTTCTCACGCACGCCTTCTTCTTTTGGGGGAGAGACACACACTCACAA
GGCTGAGCGCGCACAGACACACACACACACACACACTACAACTTCAGTAC
ATACTTCAGTACATACTTCGAAAGCACATACAACCCGTGTTGATTTCTTT
CAACCGCCGGCGCATTTTCGCTTTCGTAAAAACCAACAAAACTCACCCCC
CCCCCGCCCCGGCTGTGATCGCATCACCCGAACCCAAAACCGCCGCAGCT
GCTGCGCGCGCTGCGCGCCGGCGGGGGTCGGACCACGGTGCGGCTCATGA
ACGCGGTGGTGGACGCGTGCCGCAAGGGGCGGCGGTGGGAGAAGGCCCTC
GAGATGCTGGAGGACATGCGCTCTCACGGGGTCACGCCCGACGACTTCAC
CTACACCGCCGCCATTGCGGCGTGCAGGCAGGGGGGTCAGTGGGACAAGG
TGGGGGAAGGTGGGGGGGTAGGTGGGGGGGTGGGCGGGTGAGAGCGAATC
ACACCCTTATTCGGAATGCAGGCAGGGGGGGTTCAGTGTGACGAGGTCGG
GGGGGGGGGGGAAATCAACCCTTGTCCCTTGTCTGGAAAGGGGAACGGGG
GGGGGTGCTATGTGTGCTTGTTTTTGTCCGCGCTCAGTGGATCGTGCGTG
CTGTTAGTCATTAGTCGCTGTGAACGACTGTTTCTCGCGTCCCCAGAAAG
AGCCACATGCGACTTGTACTGCTCGCGGTCCATGCCTTCCTTTTTTGGTA
CATTTGCTTCGACGAAGTAGACTATGAGATGCAATGTACGATAGATACTG
TACGCTGTCTTAACCTTGTTCTTACCGCGTGGTGACAGGCGCTGGAGCTT
TTCCGAGAGATGCCCTCGGCCGGCGTGGAGCTAACCTCGATCCATTATAA
CGTGGCCATCGCCATCTGCGGGGAGGGGGGACAGCCGGAGAAAGCGTTCG
AGCTCTTTCGAGAGATGCAGGAGGCGGGCGACGGAACGAGGTGCGGCGGT
ACCCTTTCTGCAGCTCGATGTTCCTTCACTTGTTTTGTTGCCCTCTCGTG
AAATTCGTTTTTTCTTTTCAGAACGAAAAAGCGTCTCTTCGCATCTGTGT
ACGGTGCACACGTGTGTATGTAGGTTGTTGTTGTTGTTGGGTTTCCCCCC
CAGAAGACCTGTCTATGACGGTGTCTAGAAATAACTCTGACTGCTTGTTT
CACCGCTATGGACTTGCTGACGGCATCTGCCCCGCCCACGGGTTAACCAC
CATTCCCCCACGGCACTATTTCGGTCTAGGCATAAAACCCCTGATGGCCT
GATGGCCTGTAATAGAATATAACCCAAGCGCCAAAACGAAACGACGCTAT
CGCCTAAACTTCACACCCCCCACCAAAATCATTTCTGTGTAGGTACGAAA
TCAACCGGGTGAGCTATAACACCGCCATGATCGCCTGCGGCGAAGGCGGG
AGCTGGGAGCTAGCCCTCAAGCTCTTCCGAGAGATGGTGCCACCACCAGG
GGACTCCGCGGCATCGACCGCT

Coding sequence (CDS) from alignment at C-linearis_contig86:121278..123399-

>mRNA_C-linearis_contig86.16198.1 ID=mRNA_C-linearis_contig86.16198.1|Name=mRNA_C-linearis_contig86.16198.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1320bp|location=Sequence derived from alignment at C-linearis_contig86:121278..123399- (Chordaria linearis ClinC8C monoicous)
ATGACCTCGTTTATGTACAACGCGTGCATCAGCCACATGTCCATGTGCGG
GCGCTGGCAGGAGGCGCTCCAGGTGCTGGACCTCATGAGGGCCGTGGACT
TCCCCCCCGACGAGTTCTGCGTCACCGCCGCGATCACCGCGTGCGGGAGG
GCGGGGCAGTGGCAGAAGTCCTTGGACATGACCTCGTTTATGTACAACGC
GTGCATCAGCCACATGTCCATGTGCGGGCGCTGGCAGGAGGCGCTCCAGG
TGCTGGACCTCATGAGGGCCGTGGACTTCCCCCCCGACGAGTTCTGCGTC
ACCGCCGCGATCACCGCGTGCGGGAGGGCGGGGCAGTGGCAGAAGTCCTT
GGACCTGCTGCGCGCGCTGCGCGCCGGCGGGGGTCGGACCACGGTGCGGC
TCATGAACGCGGTGGTGGACGCGTGCCGCAAGGGGCGGCGGTGGGAGAAG
GCCCTCGAGATGCTGGAGGACATGCGCTCTCACGGGGTCACGCCCGACGA
CTTCACCTACACCGCCGCCATTGCGGCGTGCAGGCAGGGGGGTCAGTGGG
ACAAGCTGCTGCGCGCGCTGCGCGCCGGCGGGGGTCGGACCACGGTGCGG
CTCATGAACGCGGTGGTGGACGCGTGCCGCAAGGGGCGGCGGTGGGAGAA
GGCCCTCGAGATGCTGGAGGACATGCGCTCTCACGGGGTCACGCCCGACG
ACTTCACCTACACCGCCGCCATTGCGGCGTGCAGGCAGGGGGGTCAGTGG
GACAAGGCGCTGGAGCTTTTCCGAGAGATGCCCTCGGCCGGCGTGGAGCT
AACCTCGATCCATTATAACGTGGCCATCGCCATCTGCGGGGAGGGGGGAC
AGCCGGAGAAAGCGTTCGAGCTCTTTCGAGAGATGCAGGAGGCGGGCGAC
GGAACGAGGCGCTGGAGCTTTTCCGAGAGATGCCCTCGGCCGGCGTGGAG
CTAACCTCGATCCATTATAACGTGGCCATCGCCATCTGCGGGGAGGGGGG
ACAGCCGGAGAAAGCGTTCGAGCTCTTTCGAGAGATGCAGGAGGCGGGCG
ACGGAACGAGGTACGAAATCAACCGGGTGAGCTATAACACCGCCATGATC
GCCTGCGGCGAAGGCGGGAGCTGGGAGCTAGCCCTCAAGCTCTTCCGAGA
GATGGTGCCACCACCAGGGGACTCCGCGGCATCGACCGCTGTACGAAATC
AACCGGGTGAGCTATAACACCGCCATGATCGCCTGCGGCGAAGGCGGGAG
CTGGGAGCTAGCCCTCAAGCTCTTCCGAGAGATGGTGCCACCACCAGGGG
ACTCCGCGGCATCGACCGCT