prot_C-linearis_contig85.16156.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig85.16156.1
Unique Nameprot_C-linearis_contig85.16156.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length145
Homology
BLAST of mRNA_C-linearis_contig85.16156.1 vs. uniprot
Match: D7FL93_ECTSI (Thioredoxin O n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL93_ECTSI)

HSP 1 Score: 209 bits (532), Expect = 2.210e-67
Identity = 110/145 (75.86%), Postives = 121/145 (83.45%), Query Frame = 0
Query:    1 MLRTAGRAIYHRCR-RGPTAAPLSVPVAVRRFSEGGEGAAAGRLVELSTKADYVNFPKEKSVVYFTAKWCPPCRRIGPFLAELSEETEGVAFGKVDIDENEEAANHAHIKSIPTFKFFQGGEEIDTMTGADANLLEQNLAKLAEA 144
            MLRTAGRAI+  CR R P A   S P  VR FS GG      RLVELSTK DYVNFP+EKSV+YFTAKWCPPCRRIGPFLAELSEET  V+FGKVDID+NEEAA  AHIKS+PTFKFF+GG+EID+M+GADANLLEQN+AKLAEA
Sbjct:    1 MLRTAGRAIHQHCRQRVPQA---STPPCVRHFSAGG----GDRLVELSTKDDYVNFPREKSVLYFTAKWCPPCRRIGPFLAELSEETPAVSFGKVDIDDNEEAAQMAHIKSVPTFKFFKGGQEIDSMSGADANLLEQNVAKLAEA 138          
BLAST of mRNA_C-linearis_contig85.16156.1 vs. uniprot
Match: A0A836CF79_9STRA (Thioredoxin-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CF79_9STRA)

HSP 1 Score: 114 bits (284), Expect = 1.700e-29
Identity = 58/127 (45.67%), Postives = 77/127 (60.63%), Query Frame = 0
Query:   15 RGPTAAPLSVPVAVRRFSEGGEGAAAGRLVELSTKADYVNFPKEKSVVYFTAKWCPPCRRIGPFLAELSEETEGVAFGKVDIDENEEAANHAHIKSIPTFKFFQGGEEIDTMTGADANLLEQNLAKL 141
            R  TA     PV + +   G  G + G + EL++  DY +  K+K+V+YFTAKWCPPCRRI P   +L+ E   V F KVDID N+ AA  A I S+PTF F++ G  +    GAD  LLE+N+ KL
Sbjct:   24 RAATANTYDRPVVLVKHLSGAAGGSGGTVKELASMDDYQSSSKDKAVLYFTAKWCPPCRRIAPMYQDLAAEKSDVHFYKVDIDVNKAAAKDAGIMSVPTFIFYKNGHMVSKFAGADYELLEENVDKL 150          
BLAST of mRNA_C-linearis_contig85.16156.1 vs. uniprot
Match: A0A7S2FY89_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FY89_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 5.880e-23
Identity = 44/83 (53.01%), Postives = 57/83 (68.67%), Query Frame = 0
Query:   60 SVVYFTAKWCPPCRRIGPFLAELSEETEGVAFGKVDIDENEEAANHAHIKSIPTFKFFQGGEEIDTMTGADANLLEQNLAKLA 142
            SV YFTA WC PC+RI P   ELS+    + F KVDID+N+ AA+ A IKS+PTF FF+ G  +   +GAD  LLE+ L+K+A
Sbjct:   51 SVAYFTASWCGPCKRIAPIYEELSDSHPDITFAKVDIDQNQTAASKAAIKSVPTFMFFKDGNFVGQFSGADHQLLEETLSKMA 133          
BLAST of mRNA_C-linearis_contig85.16156.1 vs. uniprot
Match: A0A024U468_9STRA (Thioredoxin n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U468_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 8.790e-23
Identity = 56/129 (43.41%), Postives = 78/129 (60.47%), Query Frame = 0
Query:   18 TAAPLSVPVAVRRFSEGGEGAAAGRLVELSTKADYVNF---PKEKSVVYFTAKWCPPCRRIGPFLAELSEETEGVAFGKVDIDENEEAANHAHIKSIPTFKFFQGGEEIDTM--TGADANLLEQNLAKL 141
            TAA  +  V++  FS     A A  + EL+  A+Y      P  KSVVYFTA WC PC+ I P  AELS     V+F KVD+DE +  A+ A ++S+PTF+F+  G+   ++  +GAD NLL Q++AKL
Sbjct:    7 TAAAATSRVSIASFSS---RAGASLVKELTEHAEYEQLIARPDAKSVVYFTASWCGPCKMISPVYAELSNMNTDVSFAKVDVDEMDHTAHVAGVRSMPTFQFYSNGQLQKSLGFSGADPNLLAQSVAKL 132          
BLAST of mRNA_C-linearis_contig85.16156.1 vs. uniprot
Match: A0A448YUQ9_9STRA (Thioredoxin n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YUQ9_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 1.580e-22
Identity = 45/87 (51.72%), Postives = 58/87 (66.67%), Query Frame = 0
Query:   58 EKSVVYFTAKWCPPCRRIGPFLAELSEETEGVAFGKVDIDENEEAANHAHIKSIPTFKFFQGGEEIDTMTGADANLLEQNLAKLAEA 144
            EKS++YFTA WCPPC+ I P   ELSE+ E +AFGKVDID+  +AA    I S+PTF FF G E+ +   GA+ + LE  +  L EA
Sbjct:   20 EKSILYFTATWCPPCKIIKPVYEELSEKHENIAFGKVDIDDAYDAATEYQITSVPTFVFFNGNEKHEQFAGANQDKLESAIKDLDEA 106          
BLAST of mRNA_C-linearis_contig85.16156.1 vs. uniprot
Match: A0A7S2UE67_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UE67_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 3.520e-22
Identity = 42/83 (50.60%), Postives = 56/83 (67.47%), Query Frame = 0
Query:   59 KSVVYFTAKWCPPCRRIGPFLAELSEETEGVAFGKVDIDENEEAANHAHIKSIPTFKFFQGGEEIDTMTGADANLLEQNLAKL 141
            KSV+YFTA WCPPC+ I P   +LSE+   VAFGKVD+D N ++A    ++S+PTF  F G   +   +GADAN LE+ + KL
Sbjct:   50 KSVLYFTATWCPPCKAIAPIYEKLSEDYSDVAFGKVDVDANSDSALDFEVRSVPTFVLFDGETAVHKFSGADANQLEEEIKKL 132          
BLAST of mRNA_C-linearis_contig85.16156.1 vs. uniprot
Match: A0A7S2P9F2_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2P9F2_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 8.980e-22
Identity = 43/84 (51.19%), Postives = 58/84 (69.05%), Query Frame = 0
Query:   58 EKSVVYFTAKWCPPCRRIGPFLAELSEETEGVAFGKVDIDENEEAANHAHIKSIPTFKFFQGGEEIDTMTGADANLLEQNLAKL 141
            +KSVVYFTA WCPPC+ I P   E+SE+  GVAFGKVD+D+N ++A    I ++PTF  F G    + M+GAD+N LE+ +  L
Sbjct:   85 DKSVVYFTATWCPPCKVISPIYTEMSEKHAGVAFGKVDVDDNSDSAVDFEINAVPTFVLFNGENVSNRMSGADSNKLEELIEDL 168          
BLAST of mRNA_C-linearis_contig85.16156.1 vs. uniprot
Match: W4H7J0_9STRA (Thioredoxin n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H7J0_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 2.040e-21
Identity = 49/116 (42.24%), Postives = 69/116 (59.48%), Query Frame = 0
Query:   28 VRRFSEGGEGAAAGRLVELSTKADYVNFPKEKSVVYFTAKWCPPCRRIGPFLAELSEETEGVAFGKVDIDENEEAANHAHIKSIPTFKFFQGGEEIDTM--TGADANLLEQNLAKL 141
            V RFS  G  +    L E +     +  P  KSVVYFTA WC PC+ I P  A LS + E ++F KVD+DE +  A+ A ++S+PTF+F+  G+   ++  +GAD  LLE N+ KL
Sbjct:   31 VARFSSRGGASLVKELAEHAEYEQLIARPDAKSVVYFTAAWCGPCKMISPIYANLSNKNEDISFVKVDVDELDHTAHVAGVRSMPTFQFYANGKLQQSLGFSGADPTLLESNVNKL 146          
BLAST of mRNA_C-linearis_contig85.16156.1 vs. uniprot
Match: A0A024GE09_9STRA (Thioredoxin domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GE09_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 2.670e-21
Identity = 52/111 (46.85%), Postives = 65/111 (58.56%), Query Frame = 0
Query:   39 AAGRLVELSTKADYVNFPKE----KSVVYFTAKWCPPCRRIGPFLAELSEETEGVAFGKVDIDENEEAANHAHIKSIPTFKFFQGGEEIDTM--TGADANLLEQNLAKLAE 143
            A  R+  L +   Y    KE    K++VYFTAKWCPPC+ I P   ELS+    V F KVD+DE +E AN A + S+PTF FF+G   +  +  TGAD  LL  N AKL E
Sbjct:   18 ATSRVKLLGSHDAYKGITKEGSGRKTIVYFTAKWCPPCKFISPIFDELSDVHTAVEFVKVDVDELKETANEAGVSSMPTFHFFRGDAFLKELSFTGADEALLRTNAAKLNE 128          
BLAST of mRNA_C-linearis_contig85.16156.1 vs. uniprot
Match: A0A7S3P7G5_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3P7G5_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 3.980e-21
Identity = 53/122 (43.44%), Postives = 72/122 (59.02%), Query Frame = 0
Query:   23 SVPVAVRRFSEGGEGAAAGRLVE-LSTKADYVNFPKE--KSVVYFTAKWCPPCRRIGPFLAELSEETEGVAFGKVDIDENEEAANHAHIKSIPTFKFFQGGEEIDTMTGADANLLEQNLAKL 141
            + P+ VRR +     + A   V+ L    D  NF K+  KSV+YFTA WCPPC++I P   ELS+ TE +AFG VD+D+N +AA    I ++PTF F  G + +   +GAD N L Q L  L
Sbjct:   11 AAPLLVRRTTLRAFASVADHKVKTLEELEDVENFRKQNAKSVLYFTAVWCPPCKQIKPVYHELSKSTEKIAFGLVDVDDNGDAAVEFQISAVPTFIFSNGEKVLQRFSGADPNQLTQLLKDL 132          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig85.16156.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FL93_ECTSI2.210e-6775.86Thioredoxin O n=1 Tax=Ectocarpus siliculosus TaxID... [more]
A0A836CF79_9STRA1.700e-2945.67Thioredoxin-like protein n=1 Tax=Tribonema minus T... [more]
A0A7S2FY89_9STRA5.880e-2353.01Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A024U468_9STRA8.790e-2343.41Thioredoxin n=1 Tax=Aphanomyces invadans TaxID=157... [more]
A0A448YUQ9_9STRA1.580e-2251.72Thioredoxin n=1 Tax=Pseudo-nitzschia multistriata ... [more]
A0A7S2UE67_9STRA3.520e-2250.60Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S2P9F2_9STRA8.980e-2251.19Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
W4H7J0_9STRA2.040e-2142.24Thioredoxin n=1 Tax=Aphanomyces astaci TaxID=11209... [more]
A0A024GE09_9STRA2.670e-2146.85Thioredoxin domain-containing protein n=1 Tax=Albu... [more]
A0A7S3P7G5_9STRA3.980e-2143.44Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 131..144
NoneNo IPR availablePRINTSPR00421THIOREDOXINcoord: 107..118
score: 36.94
coord: 60..68
score: 45.68
coord: 68..77
score: 53.0
NoneNo IPR availableGENE3D3.40.30.10coord: 43..144
e-value: 3.0E-28
score: 99.8
NoneNo IPR availablePANTHERPTHR10438THIOREDOXINcoord: 45..141
NoneNo IPR availablePANTHERPTHR10438:SF405THIOREDOXIN-3-RELATEDcoord: 45..141
IPR013766Thioredoxin domainPFAMPF00085Thioredoxincoord: 53..138
e-value: 8.8E-22
score: 77.0
IPR013766Thioredoxin domainPROSITEPS51352THIOREDOXIN_2coord: 22..144
score: 11.714
IPR005746ThioredoxinPIRSFPIRSF000077Thioredoxincoord: 42..142
e-value: 2.0E-23
score: 80.3
IPR017937Thioredoxin, conserved sitePROSITEPS00194THIOREDOXIN_1coord: 61..79
IPR036249Thioredoxin-like superfamilySUPERFAMILY52833Thioredoxin-likecoord: 40..140

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig85contigC-linearis_contig85:338367..340866 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig85.16156.1mRNA_C-linearis_contig85.16156.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig85 338318..342496 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig85.16156.1 ID=prot_C-linearis_contig85.16156.1|Name=mRNA_C-linearis_contig85.16156.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=145bp
MLRTAGRAIYHRCRRGPTAAPLSVPVAVRRFSEGGEGAAAGRLVELSTKA
DYVNFPKEKSVVYFTAKWCPPCRRIGPFLAELSEETEGVAFGKVDIDENE
EAANHAHIKSIPTFKFFQGGEEIDTMTGADANLLEQNLAKLAEA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013766Thioredoxin_domain
IPR005746Thioredoxin
IPR017937Thioredoxin_CS
IPR036249Thioredoxin-like_sf