prot_C-linearis_contig85.16155.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig85.16155.1
Unique Nameprot_C-linearis_contig85.16155.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length175
Homology
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BLAST of mRNA_C-linearis_contig85.16155.1 vs. uniprot
Match: D7FL92_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL92_ECTSI)

HSP 1 Score: 217 bits (553), Expect = 1.700e-69
Identity = 110/179 (61.45%), Postives = 142/179 (79.33%), Query Frame = 0 
Query:    2 ESDRKIPALKLFISQLDRARQPVVAADMLGVD-TNLVGLVLLGVDFTRVWLQGIVVEVETLSRSFVVDDGTGTVTAVLPRVGLEDGANSAGGGADARNSGHADGLPRKGEHLLLVGAVES----HSVGQQGQQR-SSCGQYRVLCDVIKDLGAESPNRATLWGLEVVNFWRSLSHNSQG 174
            ++DRKIPA+KLF+SQL+ ARQPV AAD+ G++ +NLVGLVL+G++FTRVW+QGIV+EV    RSF+VDD TGTVTAV+P +GL+ G N AG G      G ADGLP+KG+H+L+VGAVE+    +  G++ Q+R SSC +YRVLCDV+KD+G ESPNR TLWGLEV++FW S   N QG
Sbjct:    3 DADRKIPAVKLFVSQLNSARQPVEAADVTGLEESNLVGLVLMGIEFTRVWVQGIVIEVNPAERSFIVDDNTGTVTAVVPGIGLDGGTNDAGHGV---RDGGADGLPKKGQHVLMVGAVEAPCDDNGQGRRVQRRRSSCRRYRVLCDVVKDVGPESPNRDTLWGLEVIDFWMSRPRNPQG 178
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BLAST of mRNA_C-linearis_contig85.16155.1 vs. uniprot
Match: H3GRQ2_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GRQ2_PHYRM)

HSP 1 Score: 57.8 bits (138), Expect = 1.760e-7
Identity = 38/127 (29.92%), Postives = 68/127 (53.54%), Query Frame = 0 
Query:   43 GVDFTRVWLQGIVVEVETLSRSFVVDDGTGTVTAVLPRVGLEDGANSAGGGADARNSGHADGLPRKGEHLLLVGAVESHSVGQQGQQRSSCGQYRVLCDVIKDLGAESPNRATLWGLEVVNFWRSLS 169
            GVD +R+W+QG+VVE         +DDGTG +     R+ L+    +A  G DAR        P+ G++++ +G +      Q+G++ +   +  +   V+K L A+  +R  +W LEV+ +W S++
Sbjct:   34 GVDCSRLWIQGVVVETSGEGNQCTIDDGTGVL-----RLELKVFLKNAPPGVDAR--------PQLGDYIMAIGPM------QKGKEAAGAVRTLLAHQVVK-LDAKL-HREPMWFLEVIEYWTSVA 139
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig85.16155.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FL92_ECTSI1.700e-6961.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
H3GRQ2_PHYRM1.760e-729.92Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.40.50.140coord: 5..86
e-value: 1.4E-5
score: 26.8
IPR032245RecQ-mediated genome instability protein 2PFAMPF16100RMI2coord: 8..162
e-value: 3.1E-12
score: 46.5
IPR032245RecQ-mediated genome instability protein 2PANTHERPTHR33962FAMILY NOT NAMEDcoord: 2..168

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig85contigC-linearis_contig85:332261..334148 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig85.16155.1mRNA_C-linearis_contig85.16155.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig85 331854..334178 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig85.16155.1 ID=prot_C-linearis_contig85.16155.1|Name=mRNA_C-linearis_contig85.16155.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=175bp
MESDRKIPALKLFISQLDRARQPVVAADMLGVDTNLVGLVLLGVDFTRVW
LQGIVVEVETLSRSFVVDDGTGTVTAVLPRVGLEDGANSAGGGADARNSG
HADGLPRKGEHLLLVGAVESHSVGQQGQQRSSCGQYRVLCDVIKDLGAES
PNRATLWGLEVVNFWRSLSHNSQG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032245RMI2