prot_C-linearis_contig85.16144.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig85.16144.1
Unique Nameprot_C-linearis_contig85.16144.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length143
Homology
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BLAST of mRNA_C-linearis_contig85.16144.1 vs. uniprot
Match: A0A6H5JJG3_9PHAE (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 11, mitochondrial n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJG3_9PHAE)

HSP 1 Score: 194 bits (494), Expect = 1.290e-61
Identity = 98/118 (83.05%), Postives = 105/118 (88.98%), Query Frame = 0 
Query:    6 RMIARLGASARR--PATLATAGVRRSASNLKPVDQNKAYFLNLGPHYKREGWEEIMAAAWIASAGILIVGLGYGPETGIKEWARDEALARNVREAQGLPVEYGKIYSQEPRYTFTAAE 121
            RM+AR G +A R   AT A+AG RRSASNLKPVDQNKAYFLNLGPHYK+EGWE IMAA W+ASA ILI G+GYGPETGIKEWARDEALARNVRE QGLPVEYGKIYSQ+PRYTFTAAE
Sbjct:    4 RMLARSGVAAGRRVAATSASAGARRSASNLKPVDQNKAYFLNLGPHYKKEGWEGIMAATWVASAVILIAGVGYGPETGIKEWARDEALARNVREEQGLPVEYGKIYSQQPRYTFTAAE 121
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BLAST of mRNA_C-linearis_contig85.16144.1 vs. uniprot
Match: A0A7S2SPP1_9STRA (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 11, mitochondrial n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2SPP1_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 2.620e-7
Identity = 30/69 (43.48%), Postives = 37/69 (53.62%), Query Frame = 0 
Query:   44 LNLGPHYKREGWEEIMAAAWIASAGILIVGLGYGPETGIKEWARDEALARNVREAQGLPVEYGKIYSQE 112
            L  G   KRE WE I     +     L VGL Y P T I++WA+ EALAR +    G  VE G+ Y+QE
Sbjct:   44 LGPGEKRKRESWELIYHGTMVGGLIFLAVGLYYKPNTSIRQWAKQEALARELIVEAGGEVELGRNYAQE 112
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig85.16144.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JJG3_9PHAE1.290e-6183.05NADH dehydrogenase [ubiquinone] 1 beta subcomplex ... [more]
A0A7S2SPP1_9STRA2.620e-743.48NADH dehydrogenase [ubiquinone] 1 beta subcomplex ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019329NADH:ubiquinone oxidoreductase, ESSS subunitPFAMPF10183ESSScoord: 19..103
e-value: 1.4E-7
score: 31.6
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 78..142
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..57
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 58..77

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig85contigC-linearis_contig85:67025..75288 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig85.16144.1mRNA_C-linearis_contig85.16144.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig85 66918..76407 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig85.16144.1 ID=prot_C-linearis_contig85.16144.1|Name=mRNA_C-linearis_contig85.16144.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=143bp
MASTGRMIARLGASARRPATLATAGVRRSASNLKPVDQNKAYFLNLGPHY
KREGWEEIMAAAWIASAGILIVGLGYGPETGIKEWARDEALARNVREAQG
LPVEYGKIYSQEPRYTFTAAEADDEDEDEDEDDDDDDDDDEE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019329NADH_UbQ_OxRdtase_ESSS_su