prot_C-linearis_contig84.16136.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig84.16136.1
Unique Nameprot_C-linearis_contig84.16136.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length379
Homology
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BLAST of mRNA_C-linearis_contig84.16136.1 vs. uniprot
Match: A0A6H5KD18_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KD18_9PHAE)

HSP 1 Score: 273 bits (698), Expect = 3.100e-85
Identity = 189/367 (51.50%), Postives = 226/367 (61.58%), Query Frame = 0 
Query:   45 ADAAGLWGLGSGRAAQRGGGGRSIDSNGGDLDGF---FAKFQQEQFWAEVQNAGMEVMEEEVAEKKSKDIFIQVAKACSIGAQMTLIMGGGALLSRLLPVLLGHELEDXXXXXXXXXXXXXXXXXRNHRQPALPAAAGEKRQRWTNKPEELNEDAAAVRLEGQAEGXXXXXXXXXXXXXXXXXXXTDGKSDGRSGAVV---AARGGEGE----------------------------EEVGDGEVVVDTPWRTGLRKARRLSRPFLRAMAPPLALLLVARLALAKLVVKRVDPTLELLFGDDIIDLYSVNGKKMVEKFDMPFPKDADNVPGRKKMKGRGVQRLPRPEGEAGEKEEGREGESKEEGGL 377
            A+AAG WGLG GRA +    G  + S+G D D     FAKFQ+EQFW +V+ AGMEV+EEEVAEKK+K+IF QVA+ACS+GAQMTLIMGGGALL RLLPVLLGH+L+D                 R   Q +L AA G ++   T+ P   NEDAA VRL G+                         +++G   AVV   AA  GEG                             EEVGD +VVV+T  R  LRKARRLSRPFL+AMAPPLALLLVARLAL  ++ +R+DPTLELLFGDD++DLYS N KK++ K DMPF KDA +VPGRKKMKG+GVQR PRP+GE G   EG   ES+ E  L
Sbjct:   68 AEAAGSWGLGGGRAGR----GFPVGSDGPDDDDMAEVFAKFQEEQFWEDVEYAGMEVLEEEVAEKKTKEIFAQVARACSVGAQMTLIMGGGALLFRLLPVLLGHDLDDDEGDDANTPYLLQLDDHRPQ-QASLDAARGRRQPLLTSVP---NEDAA-VRLHGE-------------------------ETEGDGTAVVVGLAAAEGEGXXXXXXXXXXXXXXXXXXXXXXXXXXXEGEEVGDVDVVVETRLRVSLRKARRLSRPFLKAMAPPLALLLVARLALGTVLARRIDPTLELLFGDDVMDLYSTN-KKVINKVDMPFAKDAQDVPGRKKMKGKGVQRQPRPDGEEGRGGEGVTAESEPEAHL 399
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig84.16136.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KD18_9PHAE3.100e-8551.50Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..47
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 31..42
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 275..293
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..30
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 43..47
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 294..378
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 48..274

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig84contigC-linearis_contig84:739437..742918 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig84.16136.1mRNA_C-linearis_contig84.16136.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig84 739395..743396 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig84.16136.1 ID=prot_C-linearis_contig84.16136.1|Name=mRNA_C-linearis_contig84.16136.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=379bp
MKRLYIASNAVTKPCFFRRDRSRCPATSAWSTTGLLLLFCFMSTADAAGL
WGLGSGRAAQRGGGGRSIDSNGGDLDGFFAKFQQEQFWAEVQNAGMEVME
EEVAEKKSKDIFIQVAKACSIGAQMTLIMGGGALLSRLLPVLLGHELEDE
EEEDAASPYLLQSDDSRNHRQPALPAAAGEKRQRWTNKPEELNEDAAAVR
LEGQAEGGGGAGGEELAEEGDGGGGGTDGKSDGRSGAVVAARGGEGEEEV
GDGEVVVDTPWRTGLRKARRLSRPFLRAMAPPLALLLVARLALAKLVVKR
VDPTLELLFGDDIIDLYSVNGKKMVEKFDMPFPKDADNVPGRKKMKGRGV
QRLPRPEGEAGEKEEGREGESKEEGGLL*
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