mRNA_C-linearis_contig84.16136.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig84.16136.1
Unique NamemRNA_C-linearis_contig84.16136.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig84.16136.1 vs. uniprot
Match: A0A6H5KD18_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KD18_9PHAE)

HSP 1 Score: 274 bits (700), Expect = 2.850e-83
Identity = 189/367 (51.50%), Postives = 226/367 (61.58%), Query Frame = 1 
Query:  175 ADAAGLWGLGSGRAAQRGGGGRSIDSNGGDLDGF---FAKFQQEQFWAEVQNAGMEVMEEEVAEKKSKDIFIQVAKACSIGAQMTLIMGGGALLSRLLPVLLGHELEDXXXXXXXXXXXXXXXXXRNHRQPALPAAAGEKRQRWTNKPEELNEDAAAVRLEGQAEGXXXXXXXXXXXXXXXXXXXTDGKSDGRSGAVV---AARGGEGE----------------------------EEVGDGEVVVDTPWRTGLRKARRLSRPFLRAMAPPLALLLVARLALAKLVVKRVDPTLELLFGDDIIDLYSVNGKKMVEKFDMPFPKDADNVPGRKKMKGRGVQRLPRPEGEAGEKEEGREGESKEEGGL 1173
            A+AAG WGLG GRA +    G  + S+G D D     FAKFQ+EQFW +V+ AGMEV+EEEVAEKK+K+IF QVA+ACS+GAQMTLIMGGGALL RLLPVLLGH+L+D                 R   Q +L AA G ++   T+ P   NEDAA VRL G+                         +++G   AVV   AA  GEG                             EEVGD +VVV+T  R  LRKARRLSRPFL+AMAPPLALLLVARLAL  ++ +R+DPTLELLFGDD++DLYS N KK++ K DMPF KDA +VPGRKKMKG+GVQR PRP+GE G   EG   ES+ E  L
Sbjct:   68 AEAAGSWGLGGGRAGR----GFPVGSDGPDDDDMAEVFAKFQEEQFWEDVEYAGMEVLEEEVAEKKTKEIFAQVARACSVGAQMTLIMGGGALLFRLLPVLLGHDLDDDEGDDANTPYLLQLDDHRPQ-QASLDAARGRRQPLLTSVP---NEDAA-VRLHGE-------------------------ETEGDGTAVVVGLAAAEGEGXXXXXXXXXXXXXXXXXXXXXXXXXXXEGEEVGDVDVVVETRLRVSLRKARRLSRPFLKAMAPPLALLLVARLALGTVLARRIDPTLELLFGDDVMDLYSTN-KKVINKVDMPFAKDAQDVPGRKKMKGKGVQRQPRPDGEEGRGGEGVTAESEPEAHL 399
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig84.16136.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KD18_9PHAE2.850e-8351.50Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig84contigC-linearis_contig84:739395..743396 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons5
Model size1657
Cds size1137
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930641.3636901-UTR-C-linearis_contig84:739394..7394361622930641.3636901-UTR-C-linearis_contig84:739394..739436Chordaria linearis ClinC8C monoicousUTRC-linearis_contig84 739395..739436 +
1690881174.3816955-UTR-C-linearis_contig84:739394..7394361690881174.3816955-UTR-C-linearis_contig84:739394..739436Chordaria linearis ClinC8C monoicousUTRC-linearis_contig84 739395..739436 +
1622930641.4619467-UTR-C-linearis_contig84:742918..7433961622930641.4619467-UTR-C-linearis_contig84:742918..743396Chordaria linearis ClinC8C monoicousUTRC-linearis_contig84 742919..743396 +
1690881174.4459982-UTR-C-linearis_contig84:742918..7433961690881174.4459982-UTR-C-linearis_contig84:742918..743396Chordaria linearis ClinC8C monoicousUTRC-linearis_contig84 742919..743396 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930641.3789563-CDS-C-linearis_contig84:739436..7396941622930641.3789563-CDS-C-linearis_contig84:739436..739694Chordaria linearis ClinC8C monoicousCDSC-linearis_contig84 739437..739694 +
1690881174.395116-CDS-C-linearis_contig84:739436..7396941690881174.395116-CDS-C-linearis_contig84:739436..739694Chordaria linearis ClinC8C monoicousCDSC-linearis_contig84 739437..739694 +
1622930641.3964891-CDS-C-linearis_contig84:740193..7403451622930641.3964891-CDS-C-linearis_contig84:740193..740345Chordaria linearis ClinC8C monoicousCDSC-linearis_contig84 740194..740345 +
1690881174.40652-CDS-C-linearis_contig84:740193..7403451690881174.40652-CDS-C-linearis_contig84:740193..740345Chordaria linearis ClinC8C monoicousCDSC-linearis_contig84 740194..740345 +
1622930641.4128435-CDS-C-linearis_contig84:741111..7414841622930641.4128435-CDS-C-linearis_contig84:741111..741484Chordaria linearis ClinC8C monoicousCDSC-linearis_contig84 741112..741484 +
1690881174.419023-CDS-C-linearis_contig84:741111..7414841690881174.419023-CDS-C-linearis_contig84:741111..741484Chordaria linearis ClinC8C monoicousCDSC-linearis_contig84 741112..741484 +
1622930641.4311895-CDS-C-linearis_contig84:742267..7424311622930641.4311895-CDS-C-linearis_contig84:742267..742431Chordaria linearis ClinC8C monoicousCDSC-linearis_contig84 742268..742431 +
1690881174.4281156-CDS-C-linearis_contig84:742267..7424311690881174.4281156-CDS-C-linearis_contig84:742267..742431Chordaria linearis ClinC8C monoicousCDSC-linearis_contig84 742268..742431 +
1622930641.4458334-CDS-C-linearis_contig84:742728..7429181622930641.4458334-CDS-C-linearis_contig84:742728..742918Chordaria linearis ClinC8C monoicousCDSC-linearis_contig84 742729..742918 +
1690881174.4370568-CDS-C-linearis_contig84:742728..7429181690881174.4370568-CDS-C-linearis_contig84:742728..742918Chordaria linearis ClinC8C monoicousCDSC-linearis_contig84 742729..742918 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig84.16136.1prot_C-linearis_contig84.16136.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig84 739437..742918 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig84.16136.1

>prot_C-linearis_contig84.16136.1 ID=prot_C-linearis_contig84.16136.1|Name=mRNA_C-linearis_contig84.16136.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=379bp
MKRLYIASNAVTKPCFFRRDRSRCPATSAWSTTGLLLLFCFMSTADAAGL
WGLGSGRAAQRGGGGRSIDSNGGDLDGFFAKFQQEQFWAEVQNAGMEVME
EEVAEKKSKDIFIQVAKACSIGAQMTLIMGGGALLSRLLPVLLGHELEDE
EEEDAASPYLLQSDDSRNHRQPALPAAAGEKRQRWTNKPEELNEDAAAVR
LEGQAEGGGGAGGEELAEEGDGGGGGTDGKSDGRSGAVVAARGGEGEEEV
GDGEVVVDTPWRTGLRKARRLSRPFLRAMAPPLALLLVARLALAKLVVKR
VDPTLELLFGDDIIDLYSVNGKKMVEKFDMPFPKDADNVPGRKKMKGRGV
QRLPRPEGEAGEKEEGREGESKEEGGLL*
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mRNA from alignment at C-linearis_contig84:739395..743396+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig84.16136.1 ID=mRNA_C-linearis_contig84.16136.1|Name=mRNA_C-linearis_contig84.16136.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4002bp|location=Sequence derived from alignment at C-linearis_contig84:739395..743396+ (Chordaria linearis ClinC8C monoicous)
CTGTGTTGTGGTGTGCTCGCTGGCTGGAGGCTCTGGTGCACGATGAAGAG
ACTGTACATAGCCAGCAACGCGGTTACCAAACCCTGCTTCTTTCGAAGAG
ACAGGTCGCGATGTCCTGCAACTTCCGCGTGGTCGACGACGGGTCTGTTG
CTGCTGTTTTGTTTCATGTCGACCGCAGACGCAGCGGGGTTGTGGGGGCT
GGGAAGCGGGAGAGCGGCGCAAAGAGGGGGTGGTGGCCGGTCGATTGACT
CGAACGGTGGCGATTTGGATGGTTTTTTCGCCAAATTTCAGCAGGAGCAG
GTACGGAGCTCTGTATATGTAGGTAGGCCAAGCTCTGAGTTCGGAAAGCA
CAGGGGGCGCCTAGCTTTTCCTCGGCTGGCGTTGATCGTCTCGCGGCACA
TGCGTCACATAATGAGTCTAAACATGCGCCGTCCACCATTTCTCGGAAAT
TCCTTCAGCGTACTCTATCCCTGCCCCCTTCCCTTGATCTGCGTCTGCCA
TGTACGTTTGCCCATTTTTGAACAAGCGTCGAGAGCGCTCATACATTACG
GTAAATGCCGTACACGTTGGCAACATTGTGTCTTAAACGCCCCAACCGCT
TACAATGTGCGCGACATGTTGCGTTTTCGCCTGGAAAAATAGAAAATAGC
CAGCGGGCTGCCTCGCTCCTGTGCTTGCAGCTATTTCAAGTTTTCCACAT
GCACACACACACACACACACACACACGACACCCACCTGTCCTCCTCCTGT
CCCCCCTTCTTCGCTCGTTGGGCCTCGCTCTGCTTCCCCCTCACCTTAGT
TTTGGGCGGAGGTGCAAAACGCAGGCATGGAGGTGATGGAGGAAGAGGTC
GCCGAGAAAAAAAGCAAAGATATCTTTATCCAGGTTGCCAAGGCATGCTC
GATCGGGGCACAGATGACCCTCATCATGGGTGGGGGAGCTCTCCTATCAA
GGTACAGCAGTATTTGTGATCAAGAATGTCTGCCGTACTCAACATATTCA
ACCCATAATTACAAGCGAACTCCGCGCTTCTGTGCTGCTATGTAAATTTG
TACCGTGAGACTGGCCTTGGTGGATCATGACCACCTGTGGGGTTCACGCT
AGCCACCGGCGTTCCGCCGTAGTTTTTGCGTCTTGGGGAACGCAGATGTG
GAATGTACGAGTGATGGGGTACTTGGGTAAACAGAGTAAGTACTCTACGG
ATAGGGCAACGTGAGGGCGGTCGGACCCCTCTGCAGCCATAAAGTCTATC
GTCCCTTGTTGTGGAAGACGCAAACATGGAACGAGAGGTGACGTGCTGAA
CTACAGCGTCTGTCCTTAAGCTTTTGTAGAGATTTAACTGTGTGTGCAGC
AAGTTCTCTCTCCGCCTACGGTATGTTTACCACAGACCGAAAACAAACCC
GACGGGACCACCTCGCGAAACACACCATCACCCAACAAAGACCCCTCTTC
TAAAGGACGCGGCTCCTCCTCATGCGGCTCGCCCAATACCCCCACGGCAC
TTGCCCCCTTGATGCCATGCTGTACGCCATGCTACGCAAGCCTGGCGCGG
TGAAACCCCGCCGTGCTCCATCCCCTAAACCTTAACGGCTTTGAAGCGAT
GCGCGGCTTTGTAAAACCTTACGACCTTGAAGAGATGCATGGTATATTGC
TTGCATCATCGTTGACGATTGGATTGGGACCCTTCCATATCTCTGTCGGA
ATCAACCGTGGCGACAGGCTGCTCCCGGTCCTGCTAGGGCACGAGCTGGA
GGACGAAGAAGAGGAAGACGCTGCCTCCCCGTACCTTCTACAGTCCGACG
ACTCTCGAAATCACCGTCAGCCGGCCCTTCCAGCCGCTGCGGGCGAGAAG
CGCCAGCGCTGGACGAACAAACCCGAGGAGCTGAACGAGGATGCGGCGGC
GGTGCGATTGGAAGGGCAGGCGGAAGGGGGTGGGGGGGCGGGCGGGGAGG
AGTTGGCGGAGGAGGGGGATGGGGGTGGGGGTGGGACAGATGGGAAGTCG
GATGGGAGGAGTGGTGCTGTGGTTGCGGCAAGAGGCGGCGAGGGTGAGGA
GGAGGTCGGGGATGGCGAGGTCGTCGTGGACACGCCCTGGGTGAGTCCAT
GGCCAGGCTCTCGCCCGCGCCGCGTGCGGGTACTTGAAGCGATGCTACCT
GTTTTTGTTGACCGCAGGTTTAGGGTTTCAGGTAAAGTGGACTTGGTCGA
GTCAGGGGTATTTATGTCTTTCGCTCGTTGCTGTATTGTTCCCACATGTT
TTACCTAGAGTAAACGCGTGCGATTTTGGTCCAAATCTTTTTGTGCGATA
TGGCCTGTCTATCAAGTGTTCGTGGCCTTGAGCACTGGCCTCTCGTCCTT
AGAGTCCGTTTGGTAAACTGGATTGATGTCGACGCACCCGTGGGAGAGTC
TATCGTTGGGTGGGGGGGCATTCCCTTGCCCCAAGCTGCTATTCTGGTTT
TACCTGGTCAGCGGCAGCTCCCCGTTCAGCAGCACCCCCGAAGGCTGTAT
TTTGTCTGCCAACCTTGAAAGTAGTTGGACATCCAGAATCCTGCTTGTAG
TTGCTTCAGAAACTCGTGGTGCTTGAGTGCCACGACTGATAGTCTAGCTC
AACACGTTTTCTTTGTGCGTGAGTGTCAAGACAGACGCTCTAGCTCAATA
CCTAGAACAACGCAGCCGAATACTGCTCGGGATATCATGAAGCCATAGCA
CATACCTATGTTCCAACCCGAAGGTGCCTTTACCTTACGTGCGGAGCGGA
AGCCACCGCTGGCGTTTGTCTGCCCGTCACTCGTCTGTGCTTTTTCGGCG
ATCGCTTTCTTGTCGCGGGTTTTGTCTCACGCACGCACAACCTTTTTTTC
TGGTGCCTTTTCTTCCCACCCAGAGAACTGGCCTTCGAAAGGCAAGGCGG
TTGTCTCGACCTTTCCTGCGGGCCATGGCCCCGCCGCTGGCTCTGCTGCT
TGTGGCGCGCTTGGCGCTCGCTAAATTGGTGGTGAAGAGGGTAGACCCAA
CGCTGGAGCTCCTGTTTGGCGACGACATAATCGACTTGTGAGTGCGTGCG
TGTGTGCGTGTGTGTGTGTGTGTGTGTGTATGTGTGTTTTCTCGTGGCTT
TTGATTGCGACTGTTTTGTGAAGCCGTTGGGCCTGGATGAGTCTGGCTAT
GTAAATATAAGTCTGCGCAACTCTTGCATCATGCCAGGACCCGCTTCGAC
CCGCTTCGGTTCGGCATGTTAAAGGCTCTCAGAGCAACCGCGAGCATTGC
TTTCTGGAGCCTTCTTTGATTTTTCTCCTTGTCTTTGCGTGTGCTCTTGG
TGCTGTCGGTCTTACCGCCGTTGCCGACAACCAGGTACTCCGTAAACGGG
AAGAAGATGGTTGAAAAGTTTGATATGCCGTTCCCCAAGGACGCCGACAA
TGTGCCCGGGCGAAAAAAGATGAAGGGGAGGGGGGTGCAGCGGCTGCCGC
GGCCTGAGGGCGAGGCAGGGGAGAAGGAAGAAGGAAGAGAAGGAGAATCC
AAAGAGGAGGGAGGCTTGTTGTAGTATCCACTGACTGCGGGTGTAGAGTG
TATTTCATACCAAGCTTGCCGGCGTATTTCGTGTCCCTTTACTTGTCACA
AGCGGGCCGCCGTCTTCGCGTTTGGGGAGGGTTAGCTTACGCGTCCGGCG
CTCACTTGTTTGGAGTTTTGTTGGCCCGACTGTAAGGTGTGCGCTCCCAC
TATCGCGAGTTTGCGGTGAACGGGAATGTGTGTTTGTTCTTGAAGAGGGG
AGGAGAATAGTTTCGATTGCCGACAAACGAGATTTGTTATTTTTCTTCTT
CTTTTTGTATGTTTCAGGATACATGGGGTCAAAACAGAGTGGCATCACCT
CCCGCAGAGGTTGGTGTTGCCACTTCGTTGCGAACTGGAAAGGAACGAGT
ATAGCATTCCGGCGCCATGAAAAACTCGGAACGACTCGCTCATTCCTTTC
CGTCCGCGACGATTTTATTCGAAAAATAATTGACTTGAAAATAGAACATG
TC
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Coding sequence (CDS) from alignment at C-linearis_contig84:739395..743396+

>mRNA_C-linearis_contig84.16136.1 ID=mRNA_C-linearis_contig84.16136.1|Name=mRNA_C-linearis_contig84.16136.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2274bp|location=Sequence derived from alignment at C-linearis_contig84:739395..743396+ (Chordaria linearis ClinC8C monoicous)
ATGAAGAGACTGTACATAGCCAGCAACGCGGTTACCAAACCCTGCTTCTT
TCGAAGAGACAGGTCGCGATGTCCTGCAACTTCCGCGTGGTCGACGACGG
GTCTGTTGCTGCTGTTTTGTTTCATGTCGACCGCAGACGCAGCGGGGTTG
TGGGGGCTGGGAAGCGGGAGAGCGGCGCAAAGAGGGGGTGGTGGCCGGTC
GATTGACTCGAACGGTGGCGATTTGGATGGTTTTTTCGCCAAATTTCAGC
AGGAGCAGATGAAGAGACTGTACATAGCCAGCAACGCGGTTACCAAACCC
TGCTTCTTTCGAAGAGACAGGTCGCGATGTCCTGCAACTTCCGCGTGGTC
GACGACGGGTCTGTTGCTGCTGTTTTGTTTCATGTCGACCGCAGACGCAG
CGGGGTTGTGGGGGCTGGGAAGCGGGAGAGCGGCGCAAAGAGGGGGTGGT
GGCCGGTCGATTGACTCGAACGGTGGCGATTTGGATGGTTTTTTCGCCAA
ATTTCAGCAGGAGCAGTTTTGGGCGGAGGTGCAAAACGCAGGCATGGAGG
TGATGGAGGAAGAGGTCGCCGAGAAAAAAAGCAAAGATATCTTTATCCAG
GTTGCCAAGGCATGCTCGATCGGGGCACAGATGACCCTCATCATGGGTGG
GGGAGCTCTCCTATCAAGTTTTGGGCGGAGGTGCAAAACGCAGGCATGGA
GGTGATGGAGGAAGAGGTCGCCGAGAAAAAAAGCAAAGATATCTTTATCC
AGGTTGCCAAGGCATGCTCGATCGGGGCACAGATGACCCTCATCATGGGT
GGGGGAGCTCTCCTATCAAGGCTGCTCCCGGTCCTGCTAGGGCACGAGCT
GGAGGACGAAGAAGAGGAAGACGCTGCCTCCCCGTACCTTCTACAGTCCG
ACGACTCTCGAAATCACCGTCAGCCGGCCCTTCCAGCCGCTGCGGGCGAG
AAGCGCCAGCGCTGGACGAACAAACCCGAGGAGCTGAACGAGGATGCGGC
GGCGGTGCGATTGGAAGGGCAGGCGGAAGGGGGTGGGGGGGCGGGCGGGG
AGGAGTTGGCGGAGGAGGGGGATGGGGGTGGGGGTGGGACAGATGGGAAG
TCGGATGGGAGGAGTGGTGCTGTGGTTGCGGCAAGAGGCGGCGAGGGTGA
GGAGGAGGTCGGGGATGGCGAGGTCGTCGTGGACACGCCCTGGGCTGCTC
CCGGTCCTGCTAGGGCACGAGCTGGAGGACGAAGAAGAGGAAGACGCTGC
CTCCCCGTACCTTCTACAGTCCGACGACTCTCGAAATCACCGTCAGCCGG
CCCTTCCAGCCGCTGCGGGCGAGAAGCGCCAGCGCTGGACGAACAAACCC
GAGGAGCTGAACGAGGATGCGGCGGCGGTGCGATTGGAAGGGCAGGCGGA
AGGGGGTGGGGGGGCGGGCGGGGAGGAGTTGGCGGAGGAGGGGGATGGGG
GTGGGGGTGGGACAGATGGGAAGTCGGATGGGAGGAGTGGTGCTGTGGTT
GCGGCAAGAGGCGGCGAGGGTGAGGAGGAGGTCGGGGATGGCGAGGTCGT
CGTGGACACGCCCTGGAGAACTGGCCTTCGAAAGGCAAGGCGGTTGTCTC
GACCTTTCCTGCGGGCCATGGCCCCGCCGCTGGCTCTGCTGCTTGTGGCG
CGCTTGGCGCTCGCTAAATTGGTGGTGAAGAGGGTAGACCCAACGCTGGA
GCTCCTGTTTGGCGACGACATAATCGACTTAGAACTGGCCTTCGAAAGGC
AAGGCGGTTGTCTCGACCTTTCCTGCGGGCCATGGCCCCGCCGCTGGCTC
TGCTGCTTGTGGCGCGCTTGGCGCTCGCTAAATTGGTGGTGAAGAGGGTA
GACCCAACGCTGGAGCTCCTGTTTGGCGACGACATAATCGACTTGTACTC
CGTAAACGGGAAGAAGATGGTTGAAAAGTTTGATATGCCGTTCCCCAAGG
ACGCCGACAATGTGCCCGGGCGAAAAAAGATGAAGGGGAGGGGGGTGCAG
CGGCTGCCGCGGCCTGAGGGCGAGGCAGGGGAGAAGGAAGAAGGAAGAGA
AGGAGAATCCAAAGAGGAGGGAGGCTTGTTGTAGGTACTCCGTAAACGGG
AAGAAGATGGTTGAAAAGTTTGATATGCCGTTCCCCAAGGACGCCGACAA
TGTGCCCGGGCGAAAAAAGATGAAGGGGAGGGGGGTGCAGCGGCTGCCGC
GGCCTGAGGGCGAGGCAGGGGAGAAGGAAGAAGGAAGAGAAGGAGAATCC
AAAGAGGAGGGAGGCTTGTTGTAG
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