prot_C-linearis_contig84.16128.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig84.16128.1
Unique Nameprot_C-linearis_contig84.16128.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length410
Homology
BLAST of mRNA_C-linearis_contig84.16128.1 vs. uniprot
Match: D8LMT5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMT5_ECTSI)

HSP 1 Score: 484 bits (1245), Expect = 7.010e-167
Identity = 281/439 (64.01%), Postives = 312/439 (71.07%), Query Frame = 0
Query:    1 MPRTTAAMVACSTSPP--AVGRRLKRRPPTEINFAAVSPPAGSLSSDEDDGTSVGF--------------STSTEAALAQCATELFAAQNPSAPPLSRGTSTMSWTTRHRRKRSDSTSSNDFVGNRAP-FQQXXXXXXXXNRITKPLPPPKHGRPQGIANDIS-FTHPPAWQQTAGQGTDGSARRTGCVIKLHRPIMSRHCRDTLRVRETVDPIDMEMDGVGACCGLCRAPSQLPCCASVLPCCAYPEELEQARRESSYLVIRDNSVEFNNPKVAMGSRPAAARVASASNSDGKGQHRGACGCAHHVRDDARVLYFDDPLLGDVSAV-TGGRGC---------------WAGLRRLFCGGRGQAVRVQSRLCCGLCVRARGLAGLPCLPVCCVYLCPSAALRYNMPAKDAVTAAAKIRQARNNALIKMREEGDAHAAVP 405
            MPR   AM + S SP    V    KRR PTEINFAA+SPPAGSLSS+ DD TS                 S +TEAALAQC  + F  QNP+APPLSRGTST SWT RHRRKRSDSTSS D  G RAP   Q XXXXX   +  KPLPP KHGRP+GI ND+S  T+P   QQ AGQGTDG+A +   VIK HRP+MSR+CR T  +R+ +D +D ++DGVGACCGLCRAP QLPC A V PCCAYPEELEQARRESSY VIRD SVEFNNPKV MGSRP+ ARVASA ++ G GQ+ GACGC  HVRDDARVLYFDDP L D++ V  GG GC                A  R+L CGGRGQAVRVQSR+CCG CVRARGL GLPC+P CC   C SA LRY+MPAKDAVTAA KI  ARNNAL KMRE G+A AAVP
Sbjct:    1 MPR---AMASSSPSPSNATVRSTSKRRQPTEINFAALSPPAGSLSSEGDDATSKDLKNKLQHDDASSSPRSAATEAALAQCGMDAFNLQNPTAPPLSRGTSTASWTARHRRKRSDSTSSLDVTGPRAPGSNQQXXXXXPQGKAAKPLPPSKHGRPRGIPNDVSGSTYPFVRQQAAGQGTDGAAAQR--VIKPHRPVMSRYCRYTFYLRDALDTVDADVDGVGACCGLCRAPPQLPCLAWVFPCCAYPEELEQARRESSYFVIRDTSVEFNNPKVVMGSRPSVARVASADSAHGNGQYSGACGCTFHVRDDARVLYFDDPTLEDMTPVFPGGGGCSRFCCGRRPSTGARLMAEARQLLCGGRGQAVRVQSRVCCGACVRARGLLGLPCVPSCCACACRSATLRYDMPAKDAVTAATKIWHARNNALTKMREVGEAQAAVP 434          
BLAST of mRNA_C-linearis_contig84.16128.1 vs. uniprot
Match: A0A7R9U5P5_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U5P5_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 2.050e-14
Identity = 57/188 (30.32%), Postives = 94/188 (50.00%), Query Frame = 0
Query:  173 KLHRPIMSRHCRDTLRVRETVDPIDMEMDGVGACCGLCRAPSQLPCCAS--VLPCCAYPEELEQARRESSYLVIRDNSVEFNNPKVAMGSRPAAARVASASNSDGKGQHRGACGCAHHVRDDARVLYFDDPLLGDVSAVTGGRGCWAGLRRLFCGGRGQAVRVQSRLCCGLCVRARGLAGLPCLPVCC 358
            ++ R +M++  + ++RV E + P + E+       G C+  S +P CA   VLPCC  PE +    R+S Y+ +++ S+E+N+P+                  +G G   G   C + V+DD  VLY+DDPLL +++  T    C    R    GG G  +++++  C G C +A  L   PC+P  C
Sbjct:   55 RMERVMMNKAEQHSIRVVEELQPGEHEV-------GNCQCFSCVPLCACCLVLPCCVIPESIAGQLRDSRYIYVKETSIEWNDPRAVC--------------LEG-GFLCGIDPCNYRVQDDVTVLYYDDPLLNEITDQTR---CCNDCRTSCFGGEGDEIQLRNTFCFGCCAKA--LPPCPCIPSFC 215          
BLAST of mRNA_C-linearis_contig84.16128.1 vs. uniprot
Match: A0A7R9YB04_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YB04_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 4.450e-9
Identity = 43/140 (30.71%), Postives = 73/140 (52.14%), Query Frame = 0
Query:  173 KLHRPIMSRHCRDTLRVRETVDPIDMEMDGVGACCGLCRAPSQLPCCAS--VLPCCAYPEELEQARRESSYLVIRDNSVEFNNPKVAMGSRPAAARVASASNSDGKGQHRGACGCAHHVRDDARVLYFDDPLLGDVSAVT 310
            ++ R +M++  + ++RV E + P + E+       G C+  S +P CA   VLPCC  PE +    R+S Y+ +++ S+E+N+P+                  +G G   G   C + V+DD  VLY+DDPLL +++  T
Sbjct:   55 RMERVMMNKAEQHSIRVVEELQPGEHEV-------GNCQCFSCVPLCACCLVLPCCVIPESIAGQLRDSRYIYVKETSIEWNDPRAVC--------------LEG-GFLCGIDPCNYRVQDDVTVLYYDDPLLNEITDQT 172          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig84.16128.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LMT5_ECTSI7.010e-16764.01Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7R9U5P5_9STRA2.050e-1430.32Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7R9YB04_9STRA4.450e-930.71Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 20..409
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..19
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 12..19
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..11

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig84contigC-linearis_contig84:658481..661539 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig84.16128.1mRNA_C-linearis_contig84.16128.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig84 658481..661539 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig84.16128.1 ID=prot_C-linearis_contig84.16128.1|Name=mRNA_C-linearis_contig84.16128.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=410bp
MPRTTAAMVACSTSPPAVGRRLKRRPPTEINFAAVSPPAGSLSSDEDDGT
SVGFSTSTEAALAQCATELFAAQNPSAPPLSRGTSTMSWTTRHRRKRSDS
TSSNDFVGNRAPFQQQQQQQQQQNRITKPLPPPKHGRPQGIANDISFTHP
PAWQQTAGQGTDGSARRTGCVIKLHRPIMSRHCRDTLRVRETVDPIDMEM
DGVGACCGLCRAPSQLPCCASVLPCCAYPEELEQARRESSYLVIRDNSVE
FNNPKVAMGSRPAAARVASASNSDGKGQHRGACGCAHHVRDDARVLYFDD
PLLGDVSAVTGGRGCWAGLRRLFCGGRGQAVRVQSRLCCGLCVRARGLAG
LPCLPVCCVYLCPSAALRYNMPAKDAVTAAAKIRQARNNALIKMREEGDA
HAAVPYERS*
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