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Homology
BLAST of mRNA_C-linearis_contig84.16128.1 vs. uniprot
Match: D8LMT5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMT5_ECTSI) HSP 1 Score: 484 bits (1245), Expect = 7.010e-167 Identity = 281/439 (64.01%), Postives = 312/439 (71.07%), Query Frame = 1
Query: 1 MPRTTAAMVACSTSPP--AVGRRLKRRPPTEINFAAVSPPAGSLSSDEDDGTSVGF--------------STSTEAALAQCATELFAAQNPSAPPLSRGTSTMSWTTRHRRKRSDSTSSNDFVGNRAP-FQQXXXXXXXXNRITKPLPPPKHGRPQGIANDIS-FTHPPAWQQTAGQGTDGSARRTGCVIKLHRPIMSRHCRDTLRVRETVDPIDMEMDGVGACCGLCRAPSQLPCCASVLPCCAYPEELEQARRESSYLVIRDNSVEFNNPKVAMGSRPAAARVASASNSDGKGQHRGACGCAHHVRDDARVLYFDDPLLGDVSAV-TGGRGC---------------WAGLRRLFCGGRGQAVRVQSRLCCGLCVRARGLAGLPCLPVCCVYLCPSAALRYNMPAKDAVTAAAKIRQARNNALIKMREEGDAHAAVP 1215
MPR AM + S SP V KRR PTEINFAA+SPPAGSLSS+ DD TS S +TEAALAQC + F QNP+APPLSRGTST SWT RHRRKRSDSTSS D G RAP Q XXXXX + KPLPP KHGRP+GI ND+S T+P QQ AGQGTDG+A + VIK HRP+MSR+CR T +R+ +D +D ++DGVGACCGLCRAP QLPC A V PCCAYPEELEQARRESSY VIRD SVEFNNPKV MGSRP+ ARVASA ++ G GQ+ GACGC HVRDDARVLYFDDP L D++ V GG GC A R+L CGGRGQAVRVQSR+CCG CVRARGL GLPC+P CC C SA LRY+MPAKDAVTAA KI ARNNAL KMRE G+A AAVP
Sbjct: 1 MPR---AMASSSPSPSNATVRSTSKRRQPTEINFAALSPPAGSLSSEGDDATSKDLKNKLQHDDASSSPRSAATEAALAQCGMDAFNLQNPTAPPLSRGTSTASWTARHRRKRSDSTSSLDVTGPRAPGSNQQXXXXXPQGKAAKPLPPSKHGRPRGIPNDVSGSTYPFVRQQAAGQGTDGAAAQR--VIKPHRPVMSRYCRYTFYLRDALDTVDADVDGVGACCGLCRAPPQLPCLAWVFPCCAYPEELEQARRESSYFVIRDTSVEFNNPKVVMGSRPSVARVASADSAHGNGQYSGACGCTFHVRDDARVLYFDDPTLEDMTPVFPGGGGCSRFCCGRRPSTGARLMAEARQLLCGGRGQAVRVQSRVCCGACVRARGLLGLPCVPSCCACACRSATLRYDMPAKDAVTAATKIWHARNNALTKMREVGEAQAAVP 434
BLAST of mRNA_C-linearis_contig84.16128.1 vs. uniprot
Match: A0A7R9U5P5_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U5P5_9STRA) HSP 1 Score: 83.2 bits (204), Expect = 2.050e-14 Identity = 57/188 (30.32%), Postives = 94/188 (50.00%), Query Frame = 1
Query: 517 KLHRPIMSRHCRDTLRVRETVDPIDMEMDGVGACCGLCRAPSQLPCCAS--VLPCCAYPEELEQARRESSYLVIRDNSVEFNNPKVAMGSRPAAARVASASNSDGKGQHRGACGCAHHVRDDARVLYFDDPLLGDVSAVTGGRGCWAGLRRLFCGGRGQAVRVQSRLCCGLCVRARGLAGLPCLPVCC 1074
++ R +M++ + ++RV E + P + E+ G C+ S +P CA VLPCC PE + R+S Y+ +++ S+E+N+P+ +G G G C + V+DD VLY+DDPLL +++ T C R GG G +++++ C G C +A L PC+P C
Sbjct: 55 RMERVMMNKAEQHSIRVVEELQPGEHEV-------GNCQCFSCVPLCACCLVLPCCVIPESIAGQLRDSRYIYVKETSIEWNDPRAVC--------------LEG-GFLCGIDPCNYRVQDDVTVLYYDDPLLNEITDQTR---CCNDCRTSCFGGEGDEIQLRNTFCFGCCAKA--LPPCPCIPSFC 215
BLAST of mRNA_C-linearis_contig84.16128.1 vs. uniprot
Match: A0A7R9YB04_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YB04_9STRA) HSP 1 Score: 67.8 bits (164), Expect = 4.450e-9 Identity = 43/140 (30.71%), Postives = 73/140 (52.14%), Query Frame = 1
Query: 517 KLHRPIMSRHCRDTLRVRETVDPIDMEMDGVGACCGLCRAPSQLPCCAS--VLPCCAYPEELEQARRESSYLVIRDNSVEFNNPKVAMGSRPAAARVASASNSDGKGQHRGACGCAHHVRDDARVLYFDDPLLGDVSAVT 930
++ R +M++ + ++RV E + P + E+ G C+ S +P CA VLPCC PE + R+S Y+ +++ S+E+N+P+ +G G G C + V+DD VLY+DDPLL +++ T
Sbjct: 55 RMERVMMNKAEQHSIRVVEELQPGEHEV-------GNCQCFSCVPLCACCLVLPCCVIPESIAGQLRDSRYIYVKETSIEWNDPRAVC--------------LEG-GFLCGIDPCNYRVQDDVTVLYYDDPLLNEITDQT 172
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-02_003590.1 |
| Exons | 6 |
| Model size | 1230 |
| Cds size | 1230 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622930640.2786345-CDS-C-linearis_contig84:658480..658588 | 1622930640.2786345-CDS-C-linearis_contig84:658480..658588 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig84 658481..658588 - |
| 1690881173.795442-CDS-C-linearis_contig84:658480..658588 | 1690881173.795442-CDS-C-linearis_contig84:658480..658588 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig84 658481..658588 - |
| 1622930640.290475-CDS-C-linearis_contig84:658917..659274 | 1622930640.290475-CDS-C-linearis_contig84:658917..659274 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig84 658918..659274 - |
| 1690881173.811209-CDS-C-linearis_contig84:658917..659274 | 1690881173.811209-CDS-C-linearis_contig84:658917..659274 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig84 658918..659274 - |
| 1622930640.304704-CDS-C-linearis_contig84:659782..659915 | 1622930640.304704-CDS-C-linearis_contig84:659782..659915 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig84 659783..659915 - |
| 1690881173.821127-CDS-C-linearis_contig84:659782..659915 | 1690881173.821127-CDS-C-linearis_contig84:659782..659915 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig84 659783..659915 - |
| 1622930640.3268018-CDS-C-linearis_contig84:660244..660439 | 1622930640.3268018-CDS-C-linearis_contig84:660244..660439 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig84 660245..660439 - |
| 1690881173.8307233-CDS-C-linearis_contig84:660244..660439 | 1690881173.8307233-CDS-C-linearis_contig84:660244..660439 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig84 660245..660439 - |
| 1622930640.3451335-CDS-C-linearis_contig84:660797..661065 | 1622930640.3451335-CDS-C-linearis_contig84:660797..661065 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig84 660798..661065 - |
| 1690881173.842774-CDS-C-linearis_contig84:660797..661065 | 1690881173.842774-CDS-C-linearis_contig84:660797..661065 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig84 660798..661065 - |
| 1622930640.3620749-CDS-C-linearis_contig84:661370..661539 | 1622930640.3620749-CDS-C-linearis_contig84:661370..661539 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig84 661371..661539 - |
| 1690881173.8530517-CDS-C-linearis_contig84:661370..661539 | 1690881173.8530517-CDS-C-linearis_contig84:661370..661539 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig84 661371..661539 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig84.16128.1 >prot_C-linearis_contig84.16128.1 ID=prot_C-linearis_contig84.16128.1|Name=mRNA_C-linearis_contig84.16128.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=410bp
MPRTTAAMVACSTSPPAVGRRLKRRPPTEINFAAVSPPAGSLSSDEDDGT SVGFSTSTEAALAQCATELFAAQNPSAPPLSRGTSTMSWTTRHRRKRSDS TSSNDFVGNRAPFQQQQQQQQQQNRITKPLPPPKHGRPQGIANDISFTHP PAWQQTAGQGTDGSARRTGCVIKLHRPIMSRHCRDTLRVRETVDPIDMEM DGVGACCGLCRAPSQLPCCASVLPCCAYPEELEQARRESSYLVIRDNSVE FNNPKVAMGSRPAAARVASASNSDGKGQHRGACGCAHHVRDDARVLYFDD PLLGDVSAVTGGRGCWAGLRRLFCGGRGQAVRVQSRLCCGLCVRARGLAG LPCLPVCCVYLCPSAALRYNMPAKDAVTAAAKIRQARNNALIKMREEGDA HAAVPYERS* back to topmRNA from alignment at C-linearis_contig84:658481..661539- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_C-linearis_contig84.16128.1 ID=mRNA_C-linearis_contig84.16128.1|Name=mRNA_C-linearis_contig84.16128.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3059bp|location=Sequence derived from alignment at C-linearis_contig84:658481..661539- (Chordaria linearis ClinC8C monoicous) ATGCCCCGCACTACCGCCGCAATGGTGGCGTGTTCGACATCCCCTCCCGC
CGTTGGCCGGCGCTTGAAGCGCCGACCCCCGACCGAAATCAACTTTGCTG
CGGTCTCACCGCCAGCTGGAAGCCTGAGCTCTGACGAAGATGATGGCACT
TCAGTGGGTTTCTCGACATGTAAGCGGATGGATTGCTCCATCACACGCCG
GTTCTTTATACGCTTGGTCGTTCCATAGAGGGTACGACAAACACACGTTG
AAAGTTACAAATATTTTTCGATCTCGAAATGCTACATAAATGTCCACTTA
CAATCACAGGTGTTTGTTTGCTCTCCGCATGAATATCTGCGCAAACCGCG
TTGGCCACGCCGTGCTCAACCCCCCCCCGTGCAATGTTGCCGTCTCCCTT
CACCGTCTCCGCCGTTGGTCGACGAAAACAACAACAACAACAACAACAAC
AACAACAACAACAACAACCTCTAGCGACCGAGGCCGCTCTCGCCCAATGC
GCCACGGAACTTTTCGCCGCTCAAAATCCGAGCGCGCCGCCGCTGTCGAG
AGGGACCTCAACGATGTCGTGGACAACCAGACACAGGCGGAAGAGAAGCG
ATTCGACGTCTTCTAACGATTTCGTCGGGAACCGAGCGCCGTTTCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAAAATAGGATTACCAAACCCTTGCCCCC
CCCTAAGCATGGCAGGCCTCAGGGTATCGCGAACGATATCAGGTATTTGC
ATCGGTGATTCGGTTCGTTTTGCCCTGGGGGAATCTATTTTATTTGTCGG
CACCAACCACCACTACTGCTGTAGTCACAAAACGAACATCATCAACAGAC
CAATTTTCGGAGCGAGTTCGGTTCCGAAGGAGTCAATCTGCCCCCAACTG
GTCTCTCCAGCAGTAGACAATGCAAGCGCACTCGAAATAGGTATCCTACT
CCCGTTGTCTACGCGATGCGAGAGTAGTTCCCGCCTTCTTTGACCCCCCC
CTTTCCCCGTGTCAGACGAGACACTTAATTGCCCGGAAGATTAGATCGCA
AACGAACACGCATTCTGCCCTCCTTCCGCATCCACCCATCGGGCGTACAG
TTTCACCCACCCGCCCGCATGGCAGCAAACAGCAGGGCAAGGGACAGACG
GTTCTGCCCGGCGAACGGGGTGCGTCATTAAGCTACATCGACCGATCATG
TCGCGGCACTGCCGGGACACCTTGCGCGTGCGGGAGACGGTTGACCCTAT
CGACATGGAGATGGATGGGGTGGGCGCCTGTTGCGGGCTTTGCAGGTTGG
TGTTTGGAGTCGCCCTTGGGTAATCACTACGCGATACGTAGAAGCACCGC
CATTAAAACAAAGTCAATGTATGCTGTGTCACGCGTCAAGGTAGCCTGTT
ACCAAAGCAGACGTAGGATACACCGACTCCGGAGGCCTCGTATCCCCGTC
AACCTCTCTAGATACGGACAGCAGTGGCAGCGGATACTTTTAGTCTTCGT
GTTCAGTCCTTTGCCTAGTTTATTCTGCCTAGAAACAATATTTCTGTCTC
GAGAATCACCACTTGGTCGTCCCGCCTGACCTGATATTTACCAACCCGCG
GCTGGTTTATCTCGCCTCGGGCAGGGCGCCGTCGCAGCTGCCGTGCTGCG
CGAGCGTGCTGCCGTGCTGCGCATACCCGGAGGAGCTGGAGCAAGCGCGG
CGGGAGTCGAGCTACCTCGTCATCCGAGACAACTCGGTCGAGTTCAACAA
CCCAAAGGTGACAAAGAAGGGCATGTGCTGCGCGGTGCAGAAACTACCCC
TTCGTACTGCAACGCGATGGCCCTGCTGGTCTCGCGTAGAAAATGCCGAG
TTCGCGCGGGTGTACGCCCAGTCCACGACGAAGAGGCGGCTGGCCCCTCG
ACAGCACACACACACGCATTGTGTGGGATGGCGTGTAGCACACGCCCGAG
GAAGCTTTCCCCCCGCGCTATGTATGGCGCATAGCGCATGCGCCAACCCA
GTCGAAACTCAGCAAGTCAGAACGTGGACCTGCTCTGTCTACCACACGTA
CGTGCTGGTTGCCAGGGAGAACCCGTTTCCCCCCCTCCTAAGGCATTGCT
GCCATGTAGCAGTCAATCTTGTTTCGCTGACAAGGGCTCCGAGCACGAAA
GCTCTGATTTTTTTACAAACACCCCCATTTCGATCTCTTTGTCTCAGTAG
CATCCGATCATATCTCCTCAGCCCTGCCAGTACACCCGCTTTTGCATGCA
CGCACGAAACGACAGGTGGCGATGGGCTCCAGGCCAGCGGCGGCGAGGGT
GGCGTCGGCGAGCAACTCTGACGGGAAGGGACAGCATAGAGGTGCCTGCG
GGTGCGCCCACCACGTCCGGGACGACGCCCGGGTGCTCTACTTCGACGAC
CCGCTCCTCGGGGACGTCTCGGCGGTCACGGGCGGCCGGGGCTGCTGGGC
GGGGCTCCGGCGGCTGTTTTGCGGCGGCCGGGGGCAGGCCGTGCGGGTGC
AGAGCCGTCTCTGCTGCGGCCTGTGCGTGAGGGCGCGGGGGCTGGCGGGG
CTTCCGTGCCTGCCGGTGTGCTGCGTGTACCTGTGCCCGTCGGCCGCGCT
GCGGTACAACATGCCGGCGAAGGTGGGTTCAACCACACACTCGCTGCTGT
CCTGGGTGTGTGGCAGCGCTGTAGCTGAAAACGAAAGGGGGTCGAGCTTC
GGGCTTGTGGGAACGCAGGCAATCAATCGTATGTTTGACTGGGCGATCTT
CTTGGAGCTGTGCTGGAGGATATGCACGTACGTACGTACGTACGTACGTA
CGCGCTGTCTCTAAACCCGAGCCTGCCTGCTGACTAGCAACGCGAGCACG
CCCCTTTGGGTCAAAGGCCTGACGTTCTTGCCCACACGTTGCTTTCGCCT
ACACATACCGTCGTTTGTGTGTGTACGTATGGACCGATCAATCAATCTCA
GGATGCCGTCACCGCCGCGGCAAAGATCAGGCAAGCCCGGAACAACGCCT
TGATCAAGATGAGAGAAGAAGGCGACGCCCACGCGGCAGTACCGTACGAG
CGCAGCTAG back to topCoding sequence (CDS) from alignment at C-linearis_contig84:658481..661539- >mRNA_C-linearis_contig84.16128.1 ID=mRNA_C-linearis_contig84.16128.1|Name=mRNA_C-linearis_contig84.16128.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2460bp|location=Sequence derived from alignment at C-linearis_contig84:658481..661539- (Chordaria linearis ClinC8C monoicous) ATGCCCCGCACTACCGCCGCAATGGTGGCGTGTTCGACATCCCCTCCCGC CGTTGGCCGGCGCTTGAAGCGCCGACCCCCGACCGAAATCAACTTTGCTG CGGTCTCACCGCCAGCTGGAAGCCTGAGCTCTGACGAAGATGATGGCACT TCAGTGGGTTTCTCGACATATGCCCCGCACTACCGCCGCAATGGTGGCGT GTTCGACATCCCCTCCCGCCGTTGGCCGGCGCTTGAAGCGCCGACCCCCG ACCGAAATCAACTTTGCTGCGGTCTCACCGCCAGCTGGAAGCCTGAGCTC TGACGAAGATGATGGCACTTCAGTGGGTTTCTCGACATCGACCGAGGCCG CTCTCGCCCAATGCGCCACGGAACTTTTCGCCGCTCAAAATCCGAGCGCG CCGCCGCTGTCGAGAGGGACCTCAACGATGTCGTGGACAACCAGACACAG GCGGAAGAGAAGCGATTCGACGTCTTCTAACGATTTCGTCGGGAACCGAG CGCCGTTTCAGCAGCAGCAGCAGCAGCAGCAGCAGCAAAATAGGATTACC AAACCCTTGCCCCCCCCTAAGCATGGCAGGCCTCAGGGTATCGCGAACGA TATCAGCGACCGAGGCCGCTCTCGCCCAATGCGCCACGGAACTTTTCGCC GCTCAAAATCCGAGCGCGCCGCCGCTGTCGAGAGGGACCTCAACGATGTC GTGGACAACCAGACACAGGCGGAAGAGAAGCGATTCGACGTCTTCTAACG ATTTCGTCGGGAACCGAGCGCCGTTTCAGCAGCAGCAGCAGCAGCAGCAG CAGCAAAATAGGATTACCAAACCCTTGCCCCCCCCTAAGCATGGCAGGCC TCAGGGTATCGCGAACGATATCAGTTTCACCCACCCGCCCGCATGGCAGC AAACAGCAGGGCAAGGGACAGACGGTTCTGCCCGGCGAACGGGGTGCGTC ATTAAGCTACATCGACCGATCATGTCGCGGCACTGCCGGGACACCTTGCG CGTGCGGGAGACGGTTGACCCTATCGACATGGAGATGGATGGGGTGGGCG CCTGTTGCGGGCTTTGCAGTTTCACCCACCCGCCCGCATGGCAGCAAACA GCAGGGCAAGGGACAGACGGTTCTGCCCGGCGAACGGGGTGCGTCATTAA GCTACATCGACCGATCATGTCGCGGCACTGCCGGGACACCTTGCGCGTGC GGGAGACGGTTGACCCTATCGACATGGAGATGGATGGGGTGGGCGCCTGT TGCGGGCTTTGCAGGGCGCCGTCGCAGCTGCCGTGCTGCGCGAGCGTGCT GCCGTGCTGCGCATACCCGGAGGAGCTGGAGCAAGCGCGGCGGGAGTCGA GCTACCTCGTCATCCGAGACAACTCGGTCGAGTTCAACAACCCAAAGGGC GCCGTCGCAGCTGCCGTGCTGCGCGAGCGTGCTGCCGTGCTGCGCATACC CGGAGGAGCTGGAGCAAGCGCGGCGGGAGTCGAGCTACCTCGTCATCCGA GACAACTCGGTCGAGTTCAACAACCCAAAGGTGGCGATGGGCTCCAGGCC AGCGGCGGCGAGGGTGGCGTCGGCGAGCAACTCTGACGGGAAGGGACAGC ATAGAGGTGCCTGCGGGTGCGCCCACCACGTCCGGGACGACGCCCGGGTG CTCTACTTCGACGACCCGCTCCTCGGGGACGTCTCGGCGGTCACGGGCGG CCGGGGCTGCTGGGCGGGGCTCCGGCGGCTGTTTTGCGGCGGCCGGGGGC AGGCCGTGCGGGTGCAGAGCCGTCTCTGCTGCGGCCTGTGCGTGAGGGCG CGGGGGCTGGCGGGGCTTCCGTGCCTGCCGGTGTGCTGCGTGTACCTGTG CCCGTCGGCCGCGCTGCGGTACAACATGCCGGCGAAGGTGGCGATGGGCT CCAGGCCAGCGGCGGCGAGGGTGGCGTCGGCGAGCAACTCTGACGGGAAG GGACAGCATAGAGGTGCCTGCGGGTGCGCCCACCACGTCCGGGACGACGC CCGGGTGCTCTACTTCGACGACCCGCTCCTCGGGGACGTCTCGGCGGTCA CGGGCGGCCGGGGCTGCTGGGCGGGGCTCCGGCGGCTGTTTTGCGGCGGC CGGGGGCAGGCCGTGCGGGTGCAGAGCCGTCTCTGCTGCGGCCTGTGCGT GAGGGCGCGGGGGCTGGCGGGGCTTCCGTGCCTGCCGGTGTGCTGCGTGT ACCTGTGCCCGTCGGCCGCGCTGCGGTACAACATGCCGGCGAAGGATGCC GTCACCGCCGCGGCAAAGATCAGGCAAGCCCGGAACAACGCCTTGATCAA GATGAGAGAAGAAGGCGACGCCCACGCGGCAGTACCGTACGAGCGCAGCT AGGATGCCGTCACCGCCGCGGCAAAGATCAGGCAAGCCCGGAACAACGCC TTGATCAAGATGAGAGAAGAAGGCGACGCCCACGCGGCAGTACCGTACGA GCGCAGCTAG back to top
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