prot_C-linearis_contig84.16124.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig84.16124.1
Unique Nameprot_C-linearis_contig84.16124.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length110
Homology
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BLAST of mRNA_C-linearis_contig84.16124.1 vs. uniprot
Match: A0A6H5JX29_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX29_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 7.250e-25
Identity = 59/109 (54.13%), Postives = 75/109 (68.81%), Query Frame = 0 
Query:    1 MSSSAATYMVLITAALSVTYLSYMMYAAYGLGALKAAAPLLGSVSIVFGIAHCLDRAQDAEDERAKSASLGGKAAGAXXXXXXXXXXXXXXXXXXXXXPAVPKRRRVAD 109
            MSSSAATY+VL+T ALSVTYLS++MY+AYGLGA+KAAAP +G+V++VF +AHCLDRA +AED  AK+A    +  G                      PA+PKRRR+AD
Sbjct:    1 MSSSAATYLVLVTVALSVTYLSFLMYSAYGLGAVKAAAPFVGTVALVFAVAHCLDRAHEAEDT-AKAAPKSTQGGGTTAKPTATT-------------PAIPKRRRIAD 95
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig84.16124.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JX29_9PHAE7.250e-2554.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 27..31
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 55..109
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 32..54
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 7..26
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..6
NoneNo IPR availableTMHMMTMhelixcoord: 5..27
NoneNo IPR availableTMHMMTMhelixcoord: 37..54

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig84contigC-linearis_contig84:626834..628116 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig84.16124.1mRNA_C-linearis_contig84.16124.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig84 626792..628183 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig84.16124.1 ID=prot_C-linearis_contig84.16124.1|Name=mRNA_C-linearis_contig84.16124.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=110bp
MSSSAATYMVLITAALSVTYLSYMMYAAYGLGALKAAAPLLGSVSIVFGI
AHCLDRAQDAEDERAKSASLGGKAAGAGGASKPKAGAATSTTTTTTTTPA
VPKRRRVAD*
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