mRNA_C-linearis_contig84.16124.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig84.16124.1
Unique NamemRNA_C-linearis_contig84.16124.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig84.16124.1 vs. uniprot
Match: A0A6H5JX29_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX29_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 3.970e-26
Identity = 59/109 (54.13%), Postives = 75/109 (68.81%), Query Frame = 2 
Query:   68 MSSSAATYMVLITAALSVTYLSYMMYAAYGLGALKAAAPLLGSVSIVFGIAHCLDRAQDAEDERAKSASLGGKAAGAXXXXXXXXXXXXXXXXXXXXXPAVPKRRRVAD 394
            MSSSAATY+VL+T ALSVTYLS++MY+AYGLGA+KAAAP +G+V++VF +AHCLDRA +AED  AK+A    +  G                      PA+PKRRR+AD
Sbjct:    1 MSSSAATYLVLVTVALSVTYLSFLMYSAYGLGAVKAAAPFVGTVALVFAVAHCLDRAHEAEDT-AKAAPKSTQGGGTTAKPTATT-------------PAIPKRRRIAD 95
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig84.16124.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JX29_9PHAE3.970e-2654.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig84contigC-linearis_contig84:626792..628183 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-02_003430.1
Exons2
Model size439
Cds size330
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig84.16124.1prot_C-linearis_contig84.16124.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig84 626834..628116 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930639.381579-UTR-C-linearis_contig84:626791..6268331622930639.381579-UTR-C-linearis_contig84:626791..626833Chordaria linearis ClinC8C monoicousUTRC-linearis_contig84 626792..626833 -
1690881173.371549-UTR-C-linearis_contig84:626791..6268331690881173.371549-UTR-C-linearis_contig84:626791..626833Chordaria linearis ClinC8C monoicousUTRC-linearis_contig84 626792..626833 -
1622930639.4286761-UTR-C-linearis_contig84:628116..6281831622930639.4286761-UTR-C-linearis_contig84:628116..628183Chordaria linearis ClinC8C monoicousUTRC-linearis_contig84 628117..628183 -
1690881173.4064157-UTR-C-linearis_contig84:628116..6281831690881173.4064157-UTR-C-linearis_contig84:628116..628183Chordaria linearis ClinC8C monoicousUTRC-linearis_contig84 628117..628183 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930639.395944-CDS-C-linearis_contig84:626833..6270181622930639.395944-CDS-C-linearis_contig84:626833..627018Chordaria linearis ClinC8C monoicousCDSC-linearis_contig84 626834..627018 -
1690881173.381295-CDS-C-linearis_contig84:626833..6270181690881173.381295-CDS-C-linearis_contig84:626833..627018Chordaria linearis ClinC8C monoicousCDSC-linearis_contig84 626834..627018 -
1622930639.4122329-CDS-C-linearis_contig84:627971..6281161622930639.4122329-CDS-C-linearis_contig84:627971..628116Chordaria linearis ClinC8C monoicousCDSC-linearis_contig84 627972..628116 -
1690881173.395589-CDS-C-linearis_contig84:627971..6281161690881173.395589-CDS-C-linearis_contig84:627971..628116Chordaria linearis ClinC8C monoicousCDSC-linearis_contig84 627972..628116 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig84.16124.1

>prot_C-linearis_contig84.16124.1 ID=prot_C-linearis_contig84.16124.1|Name=mRNA_C-linearis_contig84.16124.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=110bp
MSSSAATYMVLITAALSVTYLSYMMYAAYGLGALKAAAPLLGSVSIVFGI
AHCLDRAQDAEDERAKSASLGGKAAGAGGASKPKAGAATSTTTTTTTTPA
VPKRRRVAD*
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mRNA from alignment at C-linearis_contig84:626792..628183-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig84.16124.1 ID=mRNA_C-linearis_contig84.16124.1|Name=mRNA_C-linearis_contig84.16124.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1392bp|location=Sequence derived from alignment at C-linearis_contig84:626792..628183- (Chordaria linearis ClinC8C monoicous)
CGCCGTCTTCGCCTCCTTTGACACCGAGGTTGAGCAACACTCGCACACTC
CGATACCGCAGCATACAATGAGTTCCTCTGCAGCTACCTACATGGTGCTC
ATCACGGCAGCGTTATCCGTGACGTACCTGAGCTACATGATGTACGCCGC
GTATGGCCTGGGGGCTTTGAAAGCCGCAGCTCCCTTACTCGGAAGCGTAT
CAATAGTCTTCGGTGAGTGCGGACACACGGGTGCAAGACAACTGAACTGT
TCGTACAACAACTGGAGAGTTTGGATTTGCTTTGGGGAGAGGGTCTAGCT
TGATTCGGGCTAGGCCACGTAGCTGAACCGGTTGGCCGCGAAGAAGAGAT
GTTCACCACATACATCGAGTACAACAGCAGAAAGTCTTCCGGGCGTTTGT
TCTCGACGTCAGAAGTTGTACACCAGGGGAAATAGCCGGCTGACCTGCTG
CTTGCTACCTGCCACCATTTCCGACAACATTTGCGCGTGTTTCGATTTTC
GCACGGTTCAGCTCACGCACATCGCTACACTGCTGCTGCGCATCGAAACC
GACTGAGGCCTCAAAACTCAAAACTCATGCTGGCAATCTAGATATTTATG
CTAGAATATGGTCGCCCCGGTGGACTAGTGGTTTAACCTCGAACCCACCA
TATGGCAGCAAAGTCTGGAGTTCGATTCCAAGCAAAAGCGTTTCTTTTGC
GACTTTGCAGGTGAAAGCGATAAAATAGCTGAAAAAGCTCGTGAGTACCA
AACTTCGACTTAGCACGTTGACGAGGGAAAGGGATGGCTGCACCCTTCTC
GCGATAAAATCCAAGGCAAGCACCGCAGGAGGAAGGTGGGGCAAAAAAGA
AACAGAAAAAGAAGAAAAAAGCCCCAGTGTTTACCCCCTCCTGTGTGACC
CCGGTTGGTTCTAGTTGTACAGAAAAATACACTGAACAAGTGTAGTACTC
TAAATACACCGCAACGTGTAGTACACGTCTCGCCTTGACCGGAAAGGGAC
TGTCGCCAAAATAAATGGGACGAAAACACACACACACACACACTTCGTAC
TGGGAGTATACTTCGTATACGATGTACCGTCTCTCAATGGGTTCCGTTCC
CACCGCCCCGCGGGCCGCCGCCCTCGTGCGCACGTTACATTTCCCATGTA
CATATTTGAAAAAAGGCATTGCACATTGCCTCGACCGAGCGCAAGACGCA
GAGGACGAAAGAGCGAAATCAGCATCATTGGGCGGCAAGGCAGCAGGAGC
GGGGGGGGCGTCAAAGCCGAAGGCAGGGGCAGCAACATCAACAACAACAA
CAACAACAACAACACCGGCGGTGCCTAAGAGGCGTCGAGTCGCAGATTGA
TCGACCTTGATTTTCGCTTTTTTTTTGTGGGGAGGAGAGTGG
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Coding sequence (CDS) from alignment at C-linearis_contig84:626792..628183-

>mRNA_C-linearis_contig84.16124.1 ID=mRNA_C-linearis_contig84.16124.1|Name=mRNA_C-linearis_contig84.16124.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=660bp|location=Sequence derived from alignment at C-linearis_contig84:626792..628183- (Chordaria linearis ClinC8C monoicous)
ATGAGTTCCTCTGCAGCTACCTACATGGTGCTCATCACGGCAGCGTTATC
CGTGACGTACCTGAGCTACATGATGTACGCCGCGTATGGCCTGGGGGCTT
TGAAAGCCGCAGCTCCCTTACTCGGAAGCGTATCAATAGTCTTCGATGAG
TTCCTCTGCAGCTACCTACATGGTGCTCATCACGGCAGCGTTATCCGTGA
CGTACCTGAGCTACATGATGTACGCCGCGTATGGCCTGGGGGCTTTGAAA
GCCGCAGCTCCCTTACTCGGAAGCGTATCAATAGTCTTCGGCATTGCACA
TTGCCTCGACCGAGCGCAAGACGCAGAGGACGAAAGAGCGAAATCAGCAT
CATTGGGCGGCAAGGCAGCAGGAGCGGGGGGGGCGTCAAAGCCGAAGGCA
GGGGCAGCAACATCAACAACAACAACAACAACAACAACACCGGCGGTGCC
TAAGAGGCGTCGAGTCGCAGATTGAGCATTGCACATTGCCTCGACCGAGC
GCAAGACGCAGAGGACGAAAGAGCGAAATCAGCATCATTGGGCGGCAAGG
CAGCAGGAGCGGGGGGGGCGTCAAAGCCGAAGGCAGGGGCAGCAACATCA
ACAACAACAACAACAACAACAACACCGGCGGTGCCTAAGAGGCGTCGAGT
CGCAGATTGA
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