prot_C-linearis_contig84.16103.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig84.16103.1
Unique Nameprot_C-linearis_contig84.16103.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length342
Homology
BLAST of mRNA_C-linearis_contig84.16103.1 vs. uniprot
Match: D7FYL0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYL0_ECTSI)

HSP 1 Score: 447 bits (1151), Expect = 3.140e-155
Identity = 253/347 (72.91%), Postives = 275/347 (79.25%), Query Frame = 0
Query:    1 MPVLCVSFALQSCVRSSRFLLQGKRSLRAHGRVSSPSSWLVSPAPVTNHAVGRAFSTGSTPGEAAATASVDDAKKVAGGDFPWRNAPDQVVAPAGSGSFLDGIMESIFEDSCLKGVDFTAGAEAAFVTTAATFFKMRPSEVRAPKPVVEAAAGAEGESTSPKGDEQEGDAAA------EGKEDSTETREEEARRVLGAIDSGLVAFSSDKGGVPHYRLHRVVAKAITRKKFIFGVQRGDDLSRRFSITMSPSLDFVLEENKAFAQIKNALAGNATVTFQVDVDLACDETFYVSDKDTGEIIQGKKESSGRMHRVRLESFVLMEQTKEQPHTWKVIDLDDWLKGNAFC 341
            MPV  VS AL+SC RSS+ L QGKRSLR HGR+S P+S L+S AP      GRAFS GS  G   A A+VD AK   GGDFPWR AP+ +  PAGSGSFLDGIMESIFED C KGVDFTAGAEAAFVTTAA  FKMR  +VRAPKP VEAAA   G   +PKG  +E  A+A      E KE S ET EEEA RVL A+D GLVA SSDKGGVP+YRLHRVVAKAI RKKFIFGVQRGDDLS RF++ MSPSL+FVL+EN AFAQI+NALAGN TVTFQVDVDLACDETFYV DK+TGEIIQGKKESSGR+HRVRLES +LMEQ  EQPH WKVIDLDDWLKGNAFC
Sbjct:    1 MPVRYVSTALKSCARSSKVLFQGKRSLREHGRMS-PASSLLSQAPAAMQ--GRAFS-GSASGPGEAAAAVDMAKP--GGDFPWRGAPNLIPEPAGSGSFLDGIMESIFEDFCFKGVDFTAGAEAAFVTTAAALFKMRTLKVRAPKPSVEAAAA--GVDGAPKGGVEEDPASAGAEQEEEDKEKSAETSEEEADRVLAAVDKGLVALSSDKGGVPYYRLHRVVAKAIRRKKFIFGVQRGDDLSGRFTVAMSPSLEFVLQENNAFAQIRNALAGNVTVTFQVDVDLACDETFYVKDKETGEIIQGKKESSGRIHRVRLESCLLMEQAIEQPHIWKVIDLDDWLKGNAFC 339          
BLAST of mRNA_C-linearis_contig84.16103.1 vs. uniprot
Match: A0A6H5JXD5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXD5_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 1.300e-20
Identity = 99/308 (32.14%), Postives = 139/308 (45.13%), Query Frame = 0
Query:   60 TPGEAAATASVDDAKKVAGGDFPWRNAPDQVVAPAGSGSFLDGIMESIFED---------SCLKGVD---FTAGAEAAFVTTAATFFKMRPSEVRAPKPVVEAAAGAEGESTSPKGDE---QEGDAAAEGKEDSTETREEEARRVLGAIDSGLVAFSSDKGGVPHYRLHRVVAKAITRKKFIFGVQRGDDLSRRFSITMSPS---LDFVLEENKAFAQIK---------NALAGNATVTFQVDVDLACDETFYVSDKDTGEIIQGKKESSGRMHRVRLESFVLMEQTKEQPHTWKVIDLDDWLKGNAF 340
            TPG  A+ A V          FPWR APD      G    ++  M S+ +          + L   D   F   AE AFV  AA  F+M   +V AP    E   G EG+S+S  GD    ++G    +  E +     +   + L          +      P YRLH + +  I+    ++G QRGD      +I +  S   L  VLE+ KA ++ +           L+     T QVDVD+ C ETF+VSD  T EI+QG K  + R HR+RLES   +++  +    W V+DLDDW+KGN F
Sbjct:   59 TPGGDASAAEVPGLPSA----FPWREAPDN----RGVRGLVERAMYSVMQHQHRRFLRAATKLDDADDDAFLRAAEMAFVQVAAGVFQMPAHQVIAPLADGE---GDEGKSSSESGDRGRRRDGLPVWDIPEGALVDPRDVMHKDLADFYVQAAVAAKVSRSTPFYRLHGLRSCEISNVNVLWGAQRGDLPEEGETIEIWGSKYVLKSVLEDIKAISRYRVSKDRDVLDKPLSSIRKTTVQVDVDIGCTETFFVSDDRTEEIVQGSKAFAVRKHRLRLESSPFLKRDFQ----WSVVDLDDWMKGNTF 351          
BLAST of mRNA_C-linearis_contig84.16103.1 vs. uniprot
Match: D8LFT8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFT8_ECTSI)

HSP 1 Score: 56.6 bits (135), Expect = 2.340e-5
Identity = 44/145 (30.34%), Postives = 60/145 (41.38%), Query Frame = 0
Query:  208 PHYRLHRVVAKAITRKKFIFGVQRGDDLSRRFSITMSPS---LDFVLEENKAFAQIK---------NALAGNATVTFQVDVDLACDETFYVSDKDTGEIIQGKKESSGRMHRVRLESFVLMEQTKEQPHTWKVIDLDDWLKGNAF 340
            P YRLH   +  I+    ++G QRGD      +I +  S   L  VLE+ KA ++ +           L+     T QVDVD+ C ETF+VSD  T E                                  V+DLD+W+KGN F
Sbjct:  228 PFYRLHGFTSCEISNVNVLWGAQRGDLPEEGETIEIWGSKYVLKSVLEDIKAISRYRVNKDRAGLDKPLSSIRKTTVQVDVDIGCTETFFVSDNRTEE----------------------------------VVDLDNWMKGNTF 338          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig84.16103.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FYL0_ECTSI3.140e-15572.91Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JXD5_9PHAE1.300e-2032.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LFT8_ECTSI2.340e-530.34Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 17..341
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 12..16
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..11
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..16

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig84contigC-linearis_contig84:378930..382925 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig84.16103.1mRNA_C-linearis_contig84.16103.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig84 378238..382938 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig84.16103.1 ID=prot_C-linearis_contig84.16103.1|Name=mRNA_C-linearis_contig84.16103.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=342bp
MPVLCVSFALQSCVRSSRFLLQGKRSLRAHGRVSSPSSWLVSPAPVTNHA
VGRAFSTGSTPGEAAATASVDDAKKVAGGDFPWRNAPDQVVAPAGSGSFL
DGIMESIFEDSCLKGVDFTAGAEAAFVTTAATFFKMRPSEVRAPKPVVEA
AAGAEGESTSPKGDEQEGDAAAEGKEDSTETREEEARRVLGAIDSGLVAF
SSDKGGVPHYRLHRVVAKAITRKKFIFGVQRGDDLSRRFSITMSPSLDFV
LEENKAFAQIKNALAGNATVTFQVDVDLACDETFYVSDKDTGEIIQGKKE
SSGRMHRVRLESFVLMEQTKEQPHTWKVIDLDDWLKGNAFC*
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