mRNA_C-linearis_contig84.16103.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig84.16103.1 vs. uniprot
Match: D7FYL0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYL0_ECTSI) HSP 1 Score: 444 bits (1143), Expect = 2.280e-150 Identity = 253/347 (72.91%), Postives = 275/347 (79.25%), Query Frame = 2
Query: 14 MPVLCVSFALQSCVRSSRFLLQGKRSLRAHGRVSSPSSWLVSPAPVTNHAVGRAFSTGSTPGEAAATASVDDAKKVAGGDFPWRNAPDQVVAPAGSGSFLDGIMESIFEDSCLKGVDFTAGAEAAFVTTAATFFKMRPSEVRAPKPVVEAAAGAEGESTSPKGDEQEGDAAA------EGKEDSTETREEEARRVLGAIDSGLVAFSSDKGGVPHYRLHRVVAKAITRKKFIFGVQRGDDLSRRFSITMSPSLDFVLEENKAFAQIKNALAGNATVTFQVDVDLACDETFYVSDKDTGEIIQGKKESSGRMHRVRLESFVLMEQTKEQPHTWKVIDLDDWLKGNAFC 1036
MPV VS AL+SC RSS+ L QGKRSLR HGR+S P+S L+S AP GRAFS GS G A A+VD AK GGDFPWR AP+ + PAGSGSFLDGIMESIFED C KGVDFTAGAEAAFVTTAA FKMR +VRAPKP VEAAA G +PKG +E A+A E KE S ET EEEA RVL A+D GLVA SSDKGGVP+YRLHRVVAKAI RKKFIFGVQRGDDLS RF++ MSPSL+FVL+EN AFAQI+NALAGN TVTFQVDVDLACDETFYV DK+TGEIIQGKKESSGR+HRVRLES +LMEQ EQPH WKVIDLDDWLKGNAFC
Sbjct: 1 MPVRYVSTALKSCARSSKVLFQGKRSLREHGRMS-PASSLLSQAPAAMQ--GRAFS-GSASGPGEAAAAVDMAKP--GGDFPWRGAPNLIPEPAGSGSFLDGIMESIFEDFCFKGVDFTAGAEAAFVTTAAALFKMRTLKVRAPKPSVEAAAA--GVDGAPKGGVEEDPASAGAEQEEEDKEKSAETSEEEADRVLAAVDKGLVALSSDKGGVPYYRLHRVVAKAIRRKKFIFGVQRGDDLSGRFTVAMSPSLEFVLQENNAFAQIRNALAGNVTVTFQVDVDLACDETFYVKDKETGEIIQGKKESSGRIHRVRLESCLLMEQAIEQPHIWKVIDLDDWLKGNAFC 339
BLAST of mRNA_C-linearis_contig84.16103.1 vs. uniprot
Match: A0A6H5JXD5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXD5_9PHAE) HSP 1 Score: 99.4 bits (246), Expect = 5.320e-19 Identity = 99/308 (32.14%), Postives = 139/308 (45.13%), Query Frame = 2
Query: 191 TPGEAAATASVDDAKKVAGGDFPWRNAPDQVVAPAGSGSFLDGIMESIFED---------SCLKGVD---FTAGAEAAFVTTAATFFKMRPSEVRAPKPVVEAAAGAEGESTSPKGDE---QEGDAAAEGKEDSTETREEEARRVLGAIDSGLVAFSSDKGGVPHYRLHRVVAKAITRKKFIFGVQRGDDLSRRFSITMSPS---LDFVLEENKAFAQIK---------NALAGNATVTFQVDVDLACDETFYVSDKDTGEIIQGKKESSGRMHRVRLESFVLMEQTKEQPHTWKVIDLDDWLKGNAF 1033
TPG A+ A V FPWR APD G ++ M S+ + + L D F AE AFV AA F+M +V AP E G EG+S+S GD ++G + E + + + L + P YRLH + + I+ ++G QRGD +I + S L VLE+ KA ++ + L+ T QVDVD+ C ETF+VSD T EI+QG K + R HR+RLES +++ + W V+DLDDW+KGN F
Sbjct: 59 TPGGDASAAEVPGLPSA----FPWREAPDN----RGVRGLVERAMYSVMQHQHRRFLRAATKLDDADDDAFLRAAEMAFVQVAAGVFQMPAHQVIAPLADGE---GDEGKSSSESGDRGRRRDGLPVWDIPEGALVDPRDVMHKDLADFYVQAAVAAKVSRSTPFYRLHGLRSCEISNVNVLWGAQRGDLPEEGETIEIWGSKYVLKSVLEDIKAISRYRVSKDRDVLDKPLSSIRKTTVQVDVDIGCTETFFVSDDRTEEIVQGSKAFAVRKHRLRLESSPFLKRDFQ----WSVVDLDDWMKGNTF 351 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig84.16103.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig84.16103.1 >prot_C-linearis_contig84.16103.1 ID=prot_C-linearis_contig84.16103.1|Name=mRNA_C-linearis_contig84.16103.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=342bp MPVLCVSFALQSCVRSSRFLLQGKRSLRAHGRVSSPSSWLVSPAPVTNHAback to top mRNA from alignment at C-linearis_contig84:378238..382938- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig84.16103.1 ID=mRNA_C-linearis_contig84.16103.1|Name=mRNA_C-linearis_contig84.16103.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4701bp|location=Sequence derived from alignment at C-linearis_contig84:378238..382938- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig84:378238..382938- >mRNA_C-linearis_contig84.16103.1 ID=mRNA_C-linearis_contig84.16103.1|Name=mRNA_C-linearis_contig84.16103.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2052bp|location=Sequence derived from alignment at C-linearis_contig84:378238..382938- (Chordaria linearis ClinC8C monoicous)back to top |