prot_C-linearis_contig84.16098.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig84.16098.1
Unique Nameprot_C-linearis_contig84.16098.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length1212
Homology
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BLAST of mRNA_C-linearis_contig84.16098.1 vs. uniprot
Match: D8LMX4_ECTSI (PX domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMX4_ECTSI)

HSP 1 Score: 183 bits (464), Expect = 4.110e-43
Identity = 99/149 (66.44%), Postives = 111/149 (74.50%), Query Frame = 0 
Query:  104 WAVKQRFSTLDAMRHALWKNRLPLPADARFPRKQAPLMHLVNKWQAPWTPATAMPANEMEGRRSGLEAYLSALSGLKESWRSVIVTAVLC-AEQEGTSAAVSPATDQVRDWDAKTSPGLPPPITKAVSWVDQQNPAAALTEVAAGPGTA 251
            W VKQRFSTLDAMRH LWK RLPLP D  FPRKQAPL+  V+KW AP T   AMPA EME RR GL+AYLS LSGLK+SWRS +VT VLC AE + TSA+ SPA +Q  +    +S  LPPP+TKAVSWVDQQ PA ALT+ AA P  A
Sbjct:   18 WTVKQRFSTLDAMRHGLWKKRLPLP-DVPFPRKQAPLLMFVHKWHAPGT--LAMPAEEMEERREGLQAYLSELSGLKDSWRSDVVTEVLCLAEDDATSASASPAGNQANEAQPPSSSALPPPVTKAVSWVDQQTPATALTDFAARPDEA 163
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BLAST of mRNA_C-linearis_contig84.16098.1 vs. uniprot
Match: A0A6H5KCA3_9PHAE (PX domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCA3_9PHAE)

HSP 1 Score: 176 bits (446), Expect = 8.610e-41
Identity = 101/163 (61.96%), Postives = 114/163 (69.94%), Query Frame = 0 
Query:  104 WAVKQRFSTLDAMRHALWKNRLPLPADARFPRKQAPLMHLVNKWQAPWTPATAMPANEMEGRRSGLEAYLSALSGLKESWRSVIVTAVLC-AEQEGTSAAVSPATDQVRDW---------DAKT--SPGLPPPITKAVSWVDQQNPAAALTEVAAGPGTAAQR 254
            W VKQRFSTLDAMRH LWK RLPLP D  FPRKQAPL+  V+KW AP TPA  MPA EME RR GL+AYLS LSGLK+SWRS +VT VLC AE + TS + SPA DQV++          +A+T  S   PPP+T A SWVDQQ PA ALT+ AA P  A  R
Sbjct:   11 WTVKQRFSTLDAMRHGLWKKRLPLP-DVAFPRKQAPLLMFVHKWHAPGTPA--MPAEEMEERREGLQAYLSELSGLKDSWRSDVVTEVLCLAEDDATSPSASPAADQVQEESFARSCQANEAQTPSSSAPPPPVTNAASWVDQQTPATALTDFAATPDEAPHR 170
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig84.16098.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LMX4_ECTSI4.110e-4366.44PX domain-containing protein n=1 Tax=Ectocarpus si... [more]
A0A6H5KCA3_9PHAE8.610e-4161.96PX domain-containing protein n=1 Tax=Ectocarpus sp... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036871PX domain superfamilyGENE3D3.30.1520.10coord: 76..193
e-value: 1.3E-7
score: 33.4
IPR036871PX domain superfamilySUPERFAMILY64268PX domaincoord: 88..192

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig84contigC-linearis_contig84:312256..321955 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig84.16098.1mRNA_C-linearis_contig84.16098.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig84 312254..321955 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig84.16098.1 ID=prot_C-linearis_contig84.16098.1|Name=mRNA_C-linearis_contig84.16098.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=1212bp
CSDTHTAASPPHTYIEEGRSSLLCLGLRECSKALFEVPGLRNERVISCLP
PAAEVRRQYQTRVGCERSLVCVENMLLLKVEVVPGTEAGPVFYEISHERD
GRTWAVKQRFSTLDAMRHALWKNRLPLPADARFPRKQAPLMHLVNKWQAP
WTPATAMPANEMEGRRSGLEAYLSALSGLKESWRSVIVTAVLCAEQEGTS
AAVSPATDQVRDWDAKTSPGLPPPITKAVSWVDQQNPAAALTEVAAGPGT
AAQRSALVSPPPPPPPVSAMRSSSPSVKRPADEDPAASSAEGTAPPSESG
SASDSTDARSVRRSKNDEAGADYGADHVGEKAAVTAATAAADRAAAVVAV
PEPELERSPPSAAPVVVSSEDDGPSSPLAPVAAAAADDDAPDVVEAGAPA
ATPAAAAALPAAVGEAVGEAVAPPSPPEADTGAAVSDLAARNAAAVTPDN
PPKPEQSHLPLLIRRLREREQMWRESGQANAQTTVTAAAAAAASDSTSAT
RRDVAATPPAAAAGDAVRPADDAIAIADSAASTPTIATTAANVVKAEVGP
GGTTPPPSYETLVLPSKAAADASDEIGFAEQQEEAPGVTGVALASGGDTT
APKEQEDTASAEQDAPATEGKASGPAKEEEGEEAAAPGLPDEGVAATQVD
EGAAASSPVGEVATFTSAPVEDVAARTPTDEGIAAPQADDEGEVAATVAP
VENGDASTPPSGSRDIIDQGNGKEEGESVRGREGASAVSELGSSSATEEG
AEKDDSGVRQEESGEQQEDESRAAGDDAIKAGNTAEVSTQAAESLLPSLL
LSEPTAAAKAAALLAAEIAAEKDAQTMDGGGRKDQAKAATSPAAASTATA
AAAAPVTIQPTAERVAEITIKQDEETDTPAPAAGLHIAAPFADRQAVPFP
AAAIGITPKQEKQLAATGPTLTLSSLAADAVAAAAAAEEEAGEDAGGRND
RGGASAVSALTLSSATDDSKEEAAPAAGSGVTPAVARGAAAATQQEAGVF
FANSAANAAESEDATSLPTPTAATPKRRTSFLGRAKRSLSSKKTGSGSKQ
KDSAAAASTSPAASDLTDEKAAAAAAAIAALPSLSAAAISSSTTAATPRT
VSRLESFRNKARSLTGRLSAGGGGGSGPLSARLGGGSGPTSGRRSVSGPL
SLSSARGKGEGFFSMTTRSPEEREIPARGGGGKFKGRREREAIAEGATVS
PDSLGSEGGSGS
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036871PX_dom_sf