prot_C-linearis_contig84.16091.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig84.16091.1
Unique Nameprot_C-linearis_contig84.16091.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length122
Homology
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BLAST of mRNA_C-linearis_contig84.16091.1 vs. uniprot
Match: D7G2T4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2T4_ECTSI)

HSP 1 Score: 68.9 bits (167), Expect = 3.320e-12
Identity = 42/118 (35.59%), Postives = 66/118 (55.93%), Query Frame = 0 
Query:    3 LFAEVLADRSTLFWYDDTQDSPADWHDAFYDLVGLRVPASERSKAVDYAVGRAYESRFTHSHFPTRGEEKDVHLGEEDLSAFNRTFRDEVSPETLLKMDATLTLWLPPVLLRKFRVGS 120
            LF   L+DRS +FWY+D    P  W++ +  L G  +PA    K +  ++  A E+            +++ H G + +S+ +RT+ DEVSPET L+M++ L  WLP VLL +F V +
Sbjct:   52 LFDGQLSDRSEIFWYEDAMRDPLGWYNRWASLAGFTLPA-RWIKDIQASLTEAAEN----------DRKREPHPGGQVVSS-DRTWEDEVSPETRLEMNSILRTWLPGVLLARFDVPA 157
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig84.16091.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G2T4_ECTSI3.320e-1235.59Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig84contigC-linearis_contig84:121246..121611 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig84.16091.1mRNA_C-linearis_contig84.16091.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig84 121246..121726 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig84.16091.1 ID=prot_C-linearis_contig84.16091.1|Name=mRNA_C-linearis_contig84.16091.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=122bp
YFLFAEVLADRSTLFWYDDTQDSPADWHDAFYDLVGLRVPASERSKAVDY
AVGRAYESRFTHSHFPTRGEEKDVHLGEEDLSAFNRTFRDEVSPETLLKM
DATLTLWLPPVLLRKFRVGSF*
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