mRNA_C-linearis_contig84.16091.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig84.16091.1
Unique NamemRNA_C-linearis_contig84.16091.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig84.16091.1 vs. uniprot
Match: D7G2T4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2T4_ECTSI)

HSP 1 Score: 69.3 bits (168), Expect = 7.260e-12
Identity = 42/118 (35.59%), Postives = 66/118 (55.93%), Query Frame = 1 
Query:    7 LFAEVLADRSTLFWYDDTQDSPADWHDAFYDLVGLRVPASERSKAVDYAVGRAYESRFTHSHFPTRGEEKDVHLGEEDLSAFNRTFRDEVSPETLLKMDATLTLWLPPVLLRKFRVGS 360
            LF   L+DRS +FWY+D    P  W++ +  L G  +PA    K +  ++  A E+            +++ H G + +S+ +RT+ DEVSPET L+M++ L  WLP VLL +F V +
Sbjct:   52 LFDGQLSDRSEIFWYEDAMRDPLGWYNRWASLAGFTLPA-RWIKDIQASLTEAAEN----------DRKREPHPGGQVVSS-DRTWEDEVSPETRLEMNSILRTWLPGVLLARFDVPA 157
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig84.16091.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G2T4_ECTSI7.260e-1235.59Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig84contigC-linearis_contig84:121246..121726 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size482
Cds size366
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930632.881469-CDS-C-linearis_contig84:121245..1216111622930632.881469-CDS-C-linearis_contig84:121245..121611Chordaria linearis ClinC8C monoicousCDSC-linearis_contig84 121246..121611 +
1690881169.7398336-CDS-C-linearis_contig84:121245..1216111690881169.7398336-CDS-C-linearis_contig84:121245..121611Chordaria linearis ClinC8C monoicousCDSC-linearis_contig84 121246..121611 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930632.8954594-UTR-C-linearis_contig84:121611..1217261622930632.8954594-UTR-C-linearis_contig84:121611..121726Chordaria linearis ClinC8C monoicousUTRC-linearis_contig84 121612..121726 +
1690881169.7537625-UTR-C-linearis_contig84:121611..1217261690881169.7537625-UTR-C-linearis_contig84:121611..121726Chordaria linearis ClinC8C monoicousUTRC-linearis_contig84 121612..121726 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig84.16091.1prot_C-linearis_contig84.16091.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig84 121246..121611 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig84.16091.1

>prot_C-linearis_contig84.16091.1 ID=prot_C-linearis_contig84.16091.1|Name=mRNA_C-linearis_contig84.16091.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=122bp
YFLFAEVLADRSTLFWYDDTQDSPADWHDAFYDLVGLRVPASERSKAVDY
AVGRAYESRFTHSHFPTRGEEKDVHLGEEDLSAFNRTFRDEVSPETLLKM
DATLTLWLPPVLLRKFRVGSF*
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mRNA from alignment at C-linearis_contig84:121246..121726+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig84.16091.1 ID=mRNA_C-linearis_contig84.16091.1|Name=mRNA_C-linearis_contig84.16091.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=481bp|location=Sequence derived from alignment at C-linearis_contig84:121246..121726+ (Chordaria linearis ClinC8C monoicous)
TATTTCTTGTTCGCGGAAGTTCTGGCGGACAGATCGACGCTGTTCTGGTA
CGACGACACGCAGGACAGCCCGGCGGACTGGCACGACGCCTTCTACGACC
TGGTTGGCCTGCGCGTGCCGGCGAGCGAGCGATCGAAGGCGGTCGACTAC
GCGGTCGGACGGGCTTATGAGAGCAGGTTCACCCATTCCCATTTCCCCAC
GAGGGGAGAGGAAAAAGACGTCCACTTGGGGGAGGAGGATCTATCGGCGT
TCAACCGGACATTCAGAGACGAGGTCAGCCCGGAAACGTTGTTGAAGATG
GACGCCACGCTGACTCTTTGGCTTCCCCCGGTTCTTCTCCGAAAGTTCCG
GGTAGGGTCGTTTTGATCTTTGGTGTGCATCTGCAAGGTTCTTGCATGAG
GCGCAATTTTCCAATTTTTGGGCGTGCGGTGTCAGAAAAAGGGAGAACAG
GAAGGACAGCGACTTTTGTAGCGAAGACCGG
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Coding sequence (CDS) from alignment at C-linearis_contig84:121246..121726+

>mRNA_C-linearis_contig84.16091.1 ID=mRNA_C-linearis_contig84.16091.1|Name=mRNA_C-linearis_contig84.16091.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=732bp|location=Sequence derived from alignment at C-linearis_contig84:121246..121726+ (Chordaria linearis ClinC8C monoicous)
TATTTCTTGTTCGCGGAAGTTCTGGCGGACAGATCGACGCTGTTCTGGTA
CGACGACACGCAGGACAGCCCGGCGGACTGGCACGACGCCTTCTACGACC
TGGTTGGCCTGCGCGTGCCGGCGAGCGAGCGATCGAAGGCGGTCGACTAC
GCGGTCGGACGGGCTTATGAGAGCAGGTTCACCCATTCCCATTTCCCCAC
GAGGGGAGAGGAAAAAGACGTCCACTTGGGGGAGGAGGATCTATCGGCGT
TCAACCGGACATTCAGAGACGAGGTCAGCCCGGAAACGTTGTTGAAGATG
GACGCCACGCTGACTCTTTGGCTTCCCCCGGTTCTTCTCCGAAAGTTCCG
GGTAGGGTCGTTTTGATATTTCTTGTTCGCGGAAGTTCTGGCGGACAGAT
CGACGCTGTTCTGGTACGACGACACGCAGGACAGCCCGGCGGACTGGCAC
GACGCCTTCTACGACCTGGTTGGCCTGCGCGTGCCGGCGAGCGAGCGATC
GAAGGCGGTCGACTACGCGGTCGGACGGGCTTATGAGAGCAGGTTCACCC
ATTCCCATTTCCCCACGAGGGGAGAGGAAAAAGACGTCCACTTGGGGGAG
GAGGATCTATCGGCGTTCAACCGGACATTCAGAGACGAGGTCAGCCCGGA
AACGTTGTTGAAGATGGACGCCACGCTGACTCTTTGGCTTCCCCCGGTTC
TTCTCCGAAAGTTCCGGGTAGGGTCGTTTTGA
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