prot_C-linearis_contig83.16071.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig83.16071.1
Unique Nameprot_C-linearis_contig83.16071.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length1436
Homology
BLAST of mRNA_C-linearis_contig83.16071.1 vs. uniprot
Match: D7FM04_ECTSI (Similar to voltage-dependent calcium channel T-type alpha 1I subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM04_ECTSI)

HSP 1 Score: 1228 bits (3176), Expect = 0.000e+0
Identity = 797/1496 (53.28%), Postives = 950/1496 (63.50%), Query Frame = 0
Query:    1 TTRAQLESVALAECSLLRTQLPATFRARSSIALTAEFLRWRDHVDLRGYDHQANMQGQCLLRAASHEIAAAAALEQLTSRLCESRVGDRKLVARLVETRQHVVALRELRLKLDTARGDYLQTTWDGASLRVRQTIDDGERSPGITGVCGSVDGAWVFCATDNGLLKVFQRGKARRGPKRAKKTRQKCAYALVQSLDINGENPR--NGA--------TTKGLCMACSPNGFFVMVGCSDTAIRTYSQDTAGYRRAVHVMKAEGIRGRNPTVLYRLNSVSKGHKAAVRSVAWLEPGYYYTGGENGVVCMWRMGAAKRPIQSVDVCRSTLSSNTVRCLTIWKTTYSVDLLAACLDVDDIQELEPPVYLLAGDEDGYLSVLPARLDSKFFEIDVWKASLKHQADTA--AVTAIEVAWERVYSGSGSSGVIKAWTPLWEDETKEKLLGFSQAGQYSVHSGAVSSIIYTKGLMFSAGSDLSIVTWYPPRQDAANAALFLPHTAQGAAASSLPPPHDTEAQERQRNHSDSTEEPSPALLPPPSP-PAMPAQAGAVDDEARDGVTHESDPGVVVHVAGVVGMAVVPGGLVSADLEGRLLERGPERLIESHRTQMLPGEEIIQRLRPLALEVLRARAH---TKP---GGAAAAAGAASLVPQVAAGLGLVSSDHLCAVRFLLRAKAKRRLKEEIRAEKKKEADLKTATIFAARLGHQQGAAGPLARPMPGANKAPRESTSSDRSSASETATRARRRTILNSVSMPDVGGQDGGGMSQETADVANDVTKIADMDQKPAFLEAADLERLAKHPEVYLAELMTHFFPGRDLAPPRPSGSSEASASKRATRDRITRSSAGGGAKHVPLLDRVKARRRSAAKGIPTLGGGRRSFNLPGAVSIFSSTMEAARRAAAIPHDRTRSTDASLFSSGARDDGGEDSEEDPISLKLLSPETTGG--GPATAEVGLRDTPQARRRSITPTFNLGALLQRATREKGERNEAEGVTRQPE--AGVGNEQEEEEDNGDERVGQEKVQPIIPPAPQ----SRTHHLEEPREKRTRATSLPRTVPELSRRKAIAPAEAREQAEASEVEDTSFVGDNFSTIQLRQHGGTVTVYVPRSPPPGVWAASVAYDGERDVAWVLAEALRMYGTEHDPVIRHAGLARRPGLVRRPPARLGLFRADSKE-WEPTVALSPESPVLSVLTPGEELVVLVDGWRPELAFARRPSVTALP------LPRAGDRMAGRPDGLEAAGGGARGNRGVGMTPTFAEDGC-DAWRARSDGAWRFASKVEAERNARRSLVRLPEE-TKISGSSYIG----VTPKGGLESVVVETSERHRKRVGDIEHRDITDDYDEAGGDGKECGDSDG--WDSDSSLTDEXXXXXXXXXXXHYHYQN-----PLYQQGGTSQ-----------HSGGQEVTTNDISVTTKGLDQRCEDGAEADIDGRLE-----EAGGEVRGQQRASEEYPQPRSPPRSLVSAVFRAWG 1433
            TTRAQ E VAL ECS+LRTQLPATFRAR S+ALTAEFLRW+DHVDL G D + ++ G+CLL AASHEI A AA+EQLT+RL ES VGDRKLV RL E RQH++ L+ LR+KL+ ARGDYLQT+WDG SLRVRQTIDD ER+ GITG+C SVDG WVFC TD+GLLKVF+RGK  R  K  K+T Q+ AYALVQ++ +NG+ P+  NG         TT+GLC+ACSP+GF VM GCSD+ +RT+ QDTAG+RRAVH MKA G+RGR P +LYR  SV KGHKAAVR V WL+PGY+YTGGE+G VCMW   AA RP Q VDVCRS  S   VRCL++W+TTYS DLLAAC +VDD QE++PPV LLAGD DGYLSVLPAR DS FF ID+WK SL+HQ D +  AVTA+EVAW RVY+ SG +GVIKAWTPLW+D TKEKLLGFS  GQY+VHSG VSSI+Y KGLMFSAG+D+SI+TWYPPR+   +          G A++S P PHD E    +R++S STEEPSPALL PPSP PA+ +  G +    R GV HE+DPGVVVHVA V+G+AVVPG LVSAD  GRLLERGP R IE H  Q+LP +E IQ LRP+ALEVLR RAH   T P   GGAAA   AA+      A +     DHL AVRFLLRAKAKRR KEEIR EK+K ADL+TA IFA+RLG Q G      RPM GA +APR+S SSDRSSAS+T  RARR +IL+SVSM  V GQDG G+SQE ADV+    K+ADMDQKPAFLE ADLERL K+P+VYLAELM HFFPGRDLAP R  GS  A+A  R   +RI RS AGG  K     D VK +           G G +    P A + FSST++AARRAA   H R+  ++AS             S              TG   G     +G  +    R  +     +LGALL RATR+  E  + +  T++P   AG G E          +     ++P +    Q    S + +  E R   +         PE    +      A +Q+ A +  DTSFVGDN+ST Q+R+ G  VTV+VP SP PGVWAASV YDGERDVAWVLAEALRMY TEH PV RHAGLARRP LV R P R GLF+ +SKE WE    LS  +PVLSVL PGEELVVLV+G+ P  AFARRPSV ALP       P A  R+ G  DG  +          V    +  ED   D  RA SDG  RFA   E E  A  +  R+    T+  G S  G    ++  GG +     T   +    G     DI       G   +E GD D   + SD SLT  XXXXXXXXXXX           P Y  G  ++           +S  Q     D SVTT+G+ +RCE+        R         GGE R +++A + +PQ RSPPRSLV+ ++ AWG
Sbjct: 1553 TTRAQQEGVALRECSVLRTQLPATFRARISMALTAEFLRWKDHVDLWGCDGEVDLLGRCLLEAASHEINATAAVEQLTTRLFESHVGDRKLVTRLAEIRQHLLTLKGLRVKLNAARGDYLQTSWDGGSLRVRQTIDDEERNSGITGICASVDGVWVFCTTDDGLLKVFKRGKPPRR-KGKKRTNQQGAYALVQNMGVNGDIPKGSNGGKGSSGSKRTTRGLCVACSPDGFIVMAGCSDSGVRTFCQDTAGFRRAVHEMKAAGVRGRKPPILYRPTSVGKGHKAAVRCVTWLDPGYFYTGGEDGTVCMWNKSAANRPAQFVDVCRSNFSCGPVRCLSVWRTTYSTDLLAACFEVDDGQEVDPPVCLLAGDGDGYLSVLPARTDSSFFAIDIWKTSLRHQVDASGGAVTAVEVAWGRVYTASGLAGVIKAWTPLWDDATKEKLLGFSPVGQYAVHSGEVSSIVYAKGLMFSAGADMSIITWYPPRETGTS----------GRASASPPSPHDEEQTRLRRHNSGSTEEPSPALLAPPSPAPALASNEGGI----RTGVKHENDPGVVVHVAEVIGIAVVPGALVSADAAGRLLERGPSRHIERHCRQILPSDEAIQSLRPIALEVLRTRAHARRTTPAHRGGAAACTVAATAAGTDTAVVAQAVQDHLRAVRFLLRAKAKRRAKEEIRVEKQKAADLQTAAIFASRLGQQAG------RPMLGAGRAPRDSASSDRSSASDTFVRARRCSILSSVSMRPVAGQDGEGISQEAADVS----KLADMDQKPAFLETADLERLVKNPDVYLAELMRHFFPGRDLAPSRFPGSRGAAADTRTAPERIARSIAGGSGKRPSASDSVKVK-----------GKGDKKKRFPPAATNFSSTIDAARRAAMRMHARSHRSEASR------------SXXXXXXXXXXEDVETGDKEGHDDLHIGNMEGSLVRMETALEGRSLGALLLRATRDNREDIDTKHATQEPAVAAGKGEEGXXXXXXXXXKPRPHALEPDVNNVKQGSESSASLNSNEDRSGTSTRAGTADHKPEERTHQWGGAGSAIDQSSAGQDADTSFVGDNYSTAQMRRKG-CVTVFVPHSPSPGVWAASVEYDGERDVAWVLAEALRMYATEHSPVARHAGLARRPRLVERSPTRWGLFQGNSKESWEQGPVLSAAAPVLSVLRPGEELVVLVEGFDPAAAFARRPSVVALPHVRNDAAPGASTRIKGDRDGSLSLP-----TLPVDDAASMREDALSDGSRAPSDGPRRFAGISEPE--AADACTRVSATLTRGGGDSRGGAGDSLSATGGDQVPGAATLVAN----GPAMFEDIKTGGYYRGRKSQELGDEDANVYSSDDSLTXXXXXXXXXXXXXXXXXXXXXXXXPYYAAGDAARRPIGGNASLGRNSPAQSRLVTDASVTTRGITERCENDNSGGGGSRSRGLGSVATGGERRDERQAGDGFPQDRSPPRSLVARMYAAWG 2988          
BLAST of mRNA_C-linearis_contig83.16071.1 vs. uniprot
Match: A0A835ZJT8_9STRA (Ion transport protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJT8_9STRA)

HSP 1 Score: 236 bits (602), Expect = 6.810e-59
Identity = 183/609 (30.05%), Postives = 269/609 (44.17%), Query Frame = 0
Query:   60 LLRAASHEIAAAAALEQLTSRLCESRVG--DRKLVARLVETRQHVVALRELRLKLDTARGDYLQTTWDGASLRVRQTIDDGERSP-----------GITGVCGSVDGAWVFCATDNGLLKVFQRGKARRGPKRAKKTRQKC------------------------------AYALVQSLDINGENPRNGATTKGLCMACSPNGFFVMVGCSDTAIRTYSQDTAGYRRAV-HVMKAE-------GIRGRNPTVLYRLNSVSKGHKAAVRSVAWL-EPGYYYTGGENGVVCMWRMGAAKRPIQSVDVCRSTLSSNTVRCLTIWKTTYSVDLLAACLDVDD---IQELEPPVYLLAGDEDGYLSVLPARLDSKFFEIDVWKASLKHQADT-AAVTAIEVAWERVYSGSGSSGVIKAWTPLWEDETKEKLLGFSQAGQYSVHSGAVSSIIYTKGLMFSAGSDLSIVTWYPPRQDAANAALFLPHTAQGAAASSLPPPHDTEAQERQRNHSDSTEEPSPALLPPPSPPAMPAQAGAVDDEARDGVTHESDPGVVVHVAGVVGMAVVPGGLVSADLEGRLLERGPERLIESHRTQMLPGEEIIQRLRPLALEVLR 612
            L+R  + E+  A   E+  + + +  +G  DR +   LV  R +  +L  L  +    +GD ++ TWD A+LR  QT+     +P           G+T +C +    WVF  T  G L+VF+  + RR  + A                                     AYA  Q LD+     + G   +GLC+AC+P+   V VGC+D  +R + QD  G++ +  H  +A+       G  G   ++ Y+ ++V+ GH   V  + W+ E G   +GG +G V +WR   + R +QS DVCR  L S TVRCL +W+      LLAAC++         ++ P+  LAGD+ G +SVLP R DSKF  +D W   L+H A    AVTA++VAW RVY+ SG+SG IK W P W+DE    +      G+ SVHS  V++I    GL+ +A  D+SIVTW                                                          P    Q  AV        TH +D G + H AGV  +  V    +SAD  G L+ R      E+   + +P    + RL P+A EV+R
Sbjct: 1803 LMRPTAFELEIAELQEKTRAEVAQKHLGEGDRAVEHLLVVARAYRASLATLLQRALRQQGDLVEPTWDAAALRTHQTLCVEPAAPPSGKAKAPKAEGVTALCAAAAAEWVFACTAAGTLRVFK-ARGRRARRDADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAYAQTQVLDV-----KQGGGVRGLCVACTPDAKRVFVGCTDKTVRQFVQDVKGWKESKKHAQRAKASGSGHGGSGGPKHSMQYQADAVATGHNGEVTCLEWVPELGLCLSGGADGTVRLWRP-RSPRCVQSTDVCRGMLGSGTVRCLKVWRVKLPDALLAACVEASAPHAAAAVDAPLVALAGDDRGCVSVLPLRADSKFLALDAWAPMLRHAAHARGAVTAVQVAWGRVYTASGASGTIKIWQPKWQDERCLVMQSLELVGEQSVHSKPVTAIAAPPGLLLTASEDMSIVTWRAXXXXXXXXXXXXXXXXXXXXXXXXXXV-----------------------------PGATTQLSAV--------THATDQGFIGHAAGVTALVAVANVALSADAAGGLVVRRAAAWSEAAVLREVPSAAEVARLLPMAKEVVR 2367          
BLAST of mRNA_C-linearis_contig83.16071.1 vs. uniprot
Match: A0A6H5K9S1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9S1_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 1.850e-21
Identity = 45/69 (65.22%), Postives = 54/69 (78.26%), Query Frame = 0
Query:  282 EPGYYYTGGENGVVCMWRMGAAKRPIQSVDVCRSTLSSNTVRCLTIWKTTYSVDLLAACLDVDDIQELE 350
            +PGY+YTGGE+G VCMW   AA RP Q VDVCRS  S   VRCL++W+TTYS+DLLAAC +VDD Q L+
Sbjct:   14 DPGYFYTGGEDGTVCMWNKRAANRPAQFVDVCRSNFSCGPVRCLSVWRTTYSIDLLAACFEVDDGQGLK 82          
BLAST of mRNA_C-linearis_contig83.16071.1 vs. uniprot
Match: F0YJS4_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YJS4_AURAN)

HSP 1 Score: 62.8 bits (151), Expect = 6.940e-6
Identity = 111/511 (21.72%), Postives = 199/511 (38.94%), Query Frame = 0
Query:   10 ALAECSLLRTQLPATFRARSSIALTAEFLRWRDHVDLRGYDHQANMQGQCLLRAASHE-IAAAAALEQLTSRLCESRVGDRKLVARLVETR----QHVVALRELRLKLDTARGDYLQTTWDGASLRVRQTI-------DDGERSPGITGVCGSVDGAWVFCATDNGLLKVFQRGKARRGPKRAKKTRQKCAYALVQSLDINGENPRNGATTKGLCMACSPNGFFVMVGCSDTAIRTYSQDTAGYRRAVHVMKAEGIRGRNPTVLYRLNSVSKGHKAAVRSVAWLEPGYYYTGGENGVVCMWRMGAAKRPIQSVDVCRSTLSSNTVRCLTIWKTTYSVDLLAACLDVDDIQELEPPVYLLAGDEDGYLSVLPARLDSKFFEIDVWKASLKHQA--DTAAVTAIEVAWERVYSG--SGSSGVIKAWTPLWEDETKEKL------LGFSQAGQ----------------------------YSVHSGAVSSIIYTKGLMFSAGSDLSIVTWYPP 470
            A+ + +L++   P  FR R   ALT E  RW+  ++   +D ++  +   L+++   E ++A   LE L       R+  + L+  L E R    +HV  L  L  +++  R  +++  W   S++   T+       +  +R+     V G  DG  V  A     + V+++ K                    +       +P + +            G  ++V  +    R +S      R  V   K  G +G      +R  S+  GH AAV  +  +   + ++  E+G + +WR  A    +Q+  V  S  + + +  L   K     D L     V  + +    V    GD  G L VLP  L S++ +  VW+  +K  A      VTA++V +  VY+G  +G   V K      + +T ++       LG+ ++G                                HS  ++S     G++FSA +D++IV+W  P
Sbjct: 1937 AVLDLALMQRARPDVFRYRLRQALTLEAHRWQKQIEFSKFDEESFFECGLLIKSIKEERLSAQMQLEVL------HRLAAKGLLMSLQERRPKLHRHVTFLAALLNRVEAERSKHVRKAWLAGSMKHEGTLPVATKHAEGKDRAVSCVAV-GGKDGELVVTAHGGRHVTVWKKRKXXXXXXXXXXXXXXXXXXXXEEA----RDPWHFSPFYKTQQMTEDLGTCLVVAMTPDGRRFFSSAGEQIRGWVQGKKVRGFKGTK----FRCESIMLGHAAAVTRLV-VAHRHVFSVSEDGTIKIWRFRATDA-LQTATVSYSAQAMS-LAILNTTKPGVPEDYLGLHA-VAGLGQGRTRVIQRLGD--GSLCVLPFSLKSQWMQGAVWETKIKKLAFEGREPVTALDVQYRCVYAGCATGRIAVFKIVAGSEDMDTLQQAAKELERLGYGKSGDAFKRKGGGLDGRATSMLREVVRLDYVFTLDCHSSTITSFCMAGGVLFSAATDMAIVSWMKP 2426          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig83.16071.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FM04_ECTSI0.000e+053.28Similar to voltage-dependent calcium channel T-typ... [more]
A0A835ZJT8_9STRA6.810e-5930.05Ion transport protein-domain-containing protein n=... [more]
A0A6H5K9S1_9PHAE1.850e-2165.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
F0YJS4_AURAN6.940e-621.72Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 655..679
NoneNo IPR availablePANTHERPTHR19855WD40 REPEAT PROTEIN 12, 37coord: 111..366
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 257..299
e-value: 0.005
score: 26.1
coord: 188..235
e-value: 49.0
score: 6.3
coord: 431..468
e-value: 25.0
score: 8.2
coord: 128..169
e-value: 26.0
score: 8.0
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 203..497
e-value: 4.4E-15
score: 57.6
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 117..470

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig83contigC-linearis_contig83:664166..673030 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig83.16071.1mRNA_C-linearis_contig83.16071.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig83 664166..673030 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig83.16071.1 ID=prot_C-linearis_contig83.16071.1|Name=mRNA_C-linearis_contig83.16071.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=1436bp
TTRAQLESVALAECSLLRTQLPATFRARSSIALTAEFLRWRDHVDLRGYD
HQANMQGQCLLRAASHEIAAAAALEQLTSRLCESRVGDRKLVARLVETRQ
HVVALRELRLKLDTARGDYLQTTWDGASLRVRQTIDDGERSPGITGVCGS
VDGAWVFCATDNGLLKVFQRGKARRGPKRAKKTRQKCAYALVQSLDINGE
NPRNGATTKGLCMACSPNGFFVMVGCSDTAIRTYSQDTAGYRRAVHVMKA
EGIRGRNPTVLYRLNSVSKGHKAAVRSVAWLEPGYYYTGGENGVVCMWRM
GAAKRPIQSVDVCRSTLSSNTVRCLTIWKTTYSVDLLAACLDVDDIQELE
PPVYLLAGDEDGYLSVLPARLDSKFFEIDVWKASLKHQADTAAVTAIEVA
WERVYSGSGSSGVIKAWTPLWEDETKEKLLGFSQAGQYSVHSGAVSSIIY
TKGLMFSAGSDLSIVTWYPPRQDAANAALFLPHTAQGAAASSLPPPHDTE
AQERQRNHSDSTEEPSPALLPPPSPPAMPAQAGAVDDEARDGVTHESDPG
VVVHVAGVVGMAVVPGGLVSADLEGRLLERGPERLIESHRTQMLPGEEII
QRLRPLALEVLRARAHTKPGGAAAAAGAASLVPQVAAGLGLVSSDHLCAV
RFLLRAKAKRRLKEEIRAEKKKEADLKTATIFAARLGHQQGAAGPLARPM
PGANKAPRESTSSDRSSASETATRARRRTILNSVSMPDVGGQDGGGMSQE
TADVANDVTKIADMDQKPAFLEAADLERLAKHPEVYLAELMTHFFPGRDL
APPRPSGSSEASASKRATRDRITRSSAGGGAKHVPLLDRVKARRRSAAKG
IPTLGGGRRSFNLPGAVSIFSSTMEAARRAAAIPHDRTRSTDASLFSSGA
RDDGGEDSEEDPISLKLLSPETTGGGPATAEVGLRDTPQARRRSITPTFN
LGALLQRATREKGERNEAEGVTRQPEAGVGNEQEEEEDNGDERVGQEKVQ
PIIPPAPQSRTHHLEEPREKRTRATSLPRTVPELSRRKAIAPAEAREQAE
ASEVEDTSFVGDNFSTIQLRQHGGTVTVYVPRSPPPGVWAASVAYDGERD
VAWVLAEALRMYGTEHDPVIRHAGLARRPGLVRRPPARLGLFRADSKEWE
PTVALSPESPVLSVLTPGEELVVLVDGWRPELAFARRPSVTALPLPRAGD
RMAGRPDGLEAAGGGARGNRGVGMTPTFAEDGCDAWRARSDGAWRFASKV
EAERNARRSLVRLPEETKISGSSYIGVTPKGGLESVVVETSERHRKRVGD
IEHRDITDDYDEAGGDGKECGDSDGWDSDSSLTDEEEEGEEEEKWRHYHY
QNPLYQQGGTSQHSGGQEVTTNDISVTTKGLDQRCEDGAEADIDGRLEEA
GGEVRGQQRASEEYPQPRSPPRSLVSAVFRAWGNS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR036322WD40_repeat_dom_sf