prot_C-linearis_contig83.16066.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig83.16066.1
Unique Nameprot_C-linearis_contig83.16066.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length156
Homology
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BLAST of mRNA_C-linearis_contig83.16066.1 vs. uniprot
Match: A0A6H5K438_9PHAE (Herpes_ori_bp domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K438_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 8.470e-22
Identity = 53/109 (48.62%), Postives = 69/109 (63.30%), Query Frame = 0 
Query:   14 KNSDSEKTPMMKMSFHALGLSEIFNEMHTSCEMKKLAPLVNNELVESMSAIIDKNEIVLPGNKILDMKFYTRNRPMRTIFGQQKDTKSKGFKLSECSKHMLLPNCFVTK 122
            K    EK PM K+S H LG SEIFNE+HTSCEMK LA  V   LV  M  ++ K++IVLP   +LD+  YTRNRPM ++ G  K      F+ +E SKH+ + +C VT+
Sbjct:  133 KEKGGEKEPMYKISLHFLGRSEIFNEIHTSCEMKALAEHVKTALVADMQPLVAKHDIVLPDGNVLDLGIYTRNRPM-SLIGTAKKLGGGAFERTEESKHVPIRSCIVTQ 240
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig83.16066.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K438_9PHAE8.470e-2248.62Herpes_ori_bp domain-containing protein n=1 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig83contigC-linearis_contig83:598567..599034 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig83.16066.1mRNA_C-linearis_contig83.16066.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig83 598418..599034 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig83.16066.1 ID=prot_C-linearis_contig83.16066.1|Name=mRNA_C-linearis_contig83.16066.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=156bp
MFMEDHRENSHRIKNSDSEKTPMMKMSFHALGLSEIFNEMHTSCEMKKLA
PLVNNELVESMSAIIDKNEIVLPGNKILDMKFYTRNRPMRTIFGQQKDTK
SKGFKLSECSKHMLLPNCFVTKSLCVTLRRDTLESRKSCRLFTRSHRGIF
CNEWSP
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