mRNA_C-linearis_contig83.16066.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig83.16066.1
Unique NamemRNA_C-linearis_contig83.16066.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig83.16066.1 vs. uniprot
Match: A0A6H5K438_9PHAE (Herpes_ori_bp domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K438_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 7.090e-31
Identity = 68/156 (43.59%), Postives = 95/156 (60.90%), Query Frame = 3 
Query:   48 CPLNISDSGFQKTQFNLRKKLREVYGKYGDANNVMFMEDHRENSHRIKNSDSEKTPMMKMSFHALGLSEIFNEMHTSCEMKKLAPLVNNELVESMSAIIDKNEIVLPGNKILDMKFYTRNRPMRTIFGQQKDTKSKGFKLSECSKHMLLPNCFVTK 515
            CP     +  QK ++ ++   RE YGKY DA N++  ++ R + H+ K    EK PM K+S H LG SEIFNE+HTSCEMK LA  V   LV  M  ++ K++IVLP   +LD+  YTRNRPM ++ G  K      F+ +E SKH+ + +C VT+
Sbjct:   88 CPPETHWTQLQKIEYTIKNLFREAYGKYADAENLVITQNSRMSEHKEKGG--EKEPMYKISLHFLGRSEIFNEIHTSCEMKALAEHVKTALVADMQPLVAKHDIVLPDGNVLDLGIYTRNRPM-SLIGTAKKLGGGAFERTEESKHVPIRSCIVTQ 240
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig83.16066.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K438_9PHAE7.090e-3143.59Herpes_ori_bp domain-containing protein n=1 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig83contigC-linearis_contig83:598418..599034 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionorigin-binding protein
Ec32 orthologEc-05_007030.2
Exons1
Model size619
Cds size468
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930620.5329638-UTR-C-linearis_contig83:598417..5985661622930620.5329638-UTR-C-linearis_contig83:598417..598566Chordaria linearis ClinC8C monoicousUTRC-linearis_contig83 598418..598566 +
1690881163.4385872-UTR-C-linearis_contig83:598417..5985661690881163.4385872-UTR-C-linearis_contig83:598417..598566Chordaria linearis ClinC8C monoicousUTRC-linearis_contig83 598418..598566 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930620.5494845-CDS-C-linearis_contig83:598566..5990341622930620.5494845-CDS-C-linearis_contig83:598566..599034Chordaria linearis ClinC8C monoicousCDSC-linearis_contig83 598567..599034 +
1690881163.4487429-CDS-C-linearis_contig83:598566..5990341690881163.4487429-CDS-C-linearis_contig83:598566..599034Chordaria linearis ClinC8C monoicousCDSC-linearis_contig83 598567..599034 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig83.16066.1prot_C-linearis_contig83.16066.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig83 598567..599034 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig83.16066.1

>prot_C-linearis_contig83.16066.1 ID=prot_C-linearis_contig83.16066.1|Name=mRNA_C-linearis_contig83.16066.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=156bp
MFMEDHRENSHRIKNSDSEKTPMMKMSFHALGLSEIFNEMHTSCEMKKLA
PLVNNELVESMSAIIDKNEIVLPGNKILDMKFYTRNRPMRTIFGQQKDTK
SKGFKLSECSKHMLLPNCFVTKSLCVTLRRDTLESRKSCRLFTRSHRGIF
CNEWSP
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mRNA from alignment at C-linearis_contig83:598418..599034+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig83.16066.1 ID=mRNA_C-linearis_contig83.16066.1|Name=mRNA_C-linearis_contig83.16066.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=617bp|location=Sequence derived from alignment at C-linearis_contig83:598418..599034+ (Chordaria linearis ClinC8C monoicous)
CTTCGCTCGCGGCTCGCTCGCCGATACATCGGGAATAAATCGGTAATTGC
CCCCTGAATATTTCGGACTCTGGTTTCCAAAAAACTCAATTTAATCTTCG
GAAGAAGCTTAGAGAGGTTTACGGAAAATACGGCGACGCCAACAACGTGA
TGTTCATGGAGGATCACCGAGAAAATTCGCACAGGATCAAAAATTCGGAC
TCCGAGAAGACACCCATGATGAAAATGTCTTTCCACGCACTTGGATTGTC
AGAGATATTTAATGAGATGCACACGTCATGTGAGATGAAGAAGCTGGCAC
CCCTTGTTAACAATGAGCTGGTGGAATCCATGTCTGCTATCATCGACAAG
AACGAGATAGTACTGCCGGGAAATAAAATACTGGATATGAAATTTTACAC
CAGGAACAGACCCATGCGGACCATTTTTGGACAGCAGAAGGATACTAAAT
CGAAAGGATTCAAACTATCTGAGTGCTCCAAACACATGCTGCTACCCAAC
TGTTTTGTGACTAAGTCACTCTGTGTGACACTTCGAAGAGATACTTTAGA
GTCCCGGAAGAGTTGCAGGTTGTTCACGAGGAGTCATCGAGGCATATTCT
GCAACGAATGGTCCCCG
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Coding sequence (CDS) from alignment at C-linearis_contig83:598418..599034+

>mRNA_C-linearis_contig83.16066.1 ID=mRNA_C-linearis_contig83.16066.1|Name=mRNA_C-linearis_contig83.16066.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=936bp|location=Sequence derived from alignment at C-linearis_contig83:598418..599034+ (Chordaria linearis ClinC8C monoicous)
ATGTTCATGGAGGATCACCGAGAAAATTCGCACAGGATCAAAAATTCGGA
CTCCGAGAAGACACCCATGATGAAAATGTCTTTCCACGCACTTGGATTGT
CAGAGATATTTAATGAGATGCACACGTCATGTGAGATGAAGAAGCTGGCA
CCCCTTGTTAACAATGAGCTGGTGGAATCCATGTCTGCTATCATCGACAA
GAACGAGATAGTACTGCCGGGAAATAAAATACTGGATATGAAATTTTACA
CCAGGAACAGACCCATGCGGACCATTTTTGGACAGCAGAAGGATACTAAA
TCGAAAGGATTCAAACTATCTGAGTGCTCCAAACACATGCTGCTACCCAA
CTGTTTTGTGACTAAGTCACTCTGTGTGACACTTCGAAGAGATACTTTAG
AGTCCCGGAAGAGTTGCAGGTTGTTCACGAGGAGTCATCGAGGCATATTC
TGCAACGAATGGTCCCCGATGTTCATGGAGGATCACCGAGAAAATTCGCA
CAGGATCAAAAATTCGGACTCCGAGAAGACACCCATGATGAAAATGTCTT
TCCACGCACTTGGATTGTCAGAGATATTTAATGAGATGCACACGTCATGT
GAGATGAAGAAGCTGGCACCCCTTGTTAACAATGAGCTGGTGGAATCCAT
GTCTGCTATCATCGACAAGAACGAGATAGTACTGCCGGGAAATAAAATAC
TGGATATGAAATTTTACACCAGGAACAGACCCATGCGGACCATTTTTGGA
CAGCAGAAGGATACTAAATCGAAAGGATTCAAACTATCTGAGTGCTCCAA
ACACATGCTGCTACCCAACTGTTTTGTGACTAAGTCACTCTGTGTGACAC
TTCGAAGAGATACTTTAGAGTCCCGGAAGAGTTGCAGGTTGTTCACGAGG
AGTCATCGAGGCATATTCTGCAACGAATGGTCCCCG
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