prot_C-linearis_contig83.16048.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig83.16048.1
Unique Nameprot_C-linearis_contig83.16048.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length173
Homology
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BLAST of mRNA_C-linearis_contig83.16048.1 vs. uniprot
Match: D7G7L1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7L1_ECTSI)

HSP 1 Score: 153 bits (386), Expect = 3.410e-43
Identity = 85/149 (57.05%), Postives = 109/149 (73.15%), Query Frame = 0 
Query:   12 QPPQWAIFIIAVIADLLAAGGFVPAQYKAILRSVVMYCLYREWGLAFACGFVLPRSLPLAGVCFLKKKWLALRSSAQGQLKAMAAAANDQEGDRSPNTGEAGGDGDRNNRRAEREVRN-EVRGYDVSAVSGEEVVELSSWEAEGTTSMG 159
            QPP+WAIF++AVIADL++A G +PA+  ++ R + ++ LYREW LAFACGFVLPR +PL  VCFLK+KW A  +SAQ +L A+ A AN+  G  S N  +AG  G+ +  R  R  +  EV GYDVS+VSGEEVVELSSW AE TTS+G
Sbjct:   93 QPPEWAIFMVAVIADLVSAAGLLPAERLSLFRGLAVFLLYREWALAFACGFVLPRVVPLIAVCFLKQKWRAFNASAQERLNALVATANECAG-LSTNVPQAGMGGNTSAHRESRHTQEGEVSGYDVSSVSGEEVVELSSWAAE-TTSVG 239
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BLAST of mRNA_C-linearis_contig83.16048.1 vs. uniprot
Match: A0A6H5JGG0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGG0_9PHAE)

HSP 1 Score: 146 bits (369), Expect = 1.390e-41
Identity = 84/157 (53.50%), Postives = 112/157 (71.34%), Query Frame = 0 
Query:    4 GSAARADRQPPQWAIFIIAVIADLLAAGGFVPAQYKAILRSVVMYCLYREWGLAFACGFVLPRSLPLAGVCFLKKKWLALRSSAQGQLKAMAAAANDQEGDRSPNTGEAGGDGDRNNRRAEREVRN-EVRGYDVSAVSGEEVVELSSWEAEGTTSMG 159
            GS AR   QPP+WAIF++A+IADL++A G +P +  ++ R + ++ LY+EW LA ACGFVLPR +PL  VCFLK+KW A ++SAQ +L A+AA AN++ G  S N   AG  G+ +  R  R  +  +V GYDVS+VSGEEVVELSSW AE T S+G
Sbjct:   10 GSTARL--QPPEWAIFMVAIIADLVSAAGLLPVERLSLFRGLAVFLLYKEWALASACGFVLPRVVPLIAVCFLKQKWRAFKASAQERLNALAATANERAGV-STNVPHAGMGGNTSAHRHSRHSQEGKVSGYDVSSVSGEEVVELSSWAAE-TASVG 162
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig83.16048.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G7L1_ECTSI3.410e-4357.05Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JGG0_9PHAE1.390e-4153.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 54..76
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..15
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 16..34
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 35..53
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 77..172
NoneNo IPR availableTMHMMTMhelixcoord: 54..76
NoneNo IPR availableTMHMMTMhelixcoord: 16..34

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig83contigC-linearis_contig83:335742..338665 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig83.16048.1mRNA_C-linearis_contig83.16048.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig83 335700..339682 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig83.16048.1 ID=prot_C-linearis_contig83.16048.1|Name=mRNA_C-linearis_contig83.16048.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=173bp
MRDGSAARADRQPPQWAIFIIAVIADLLAAGGFVPAQYKAILRSVVMYCL
YREWGLAFACGFVLPRSLPLAGVCFLKKKWLALRSSAQGQLKAMAAAAND
QEGDRSPNTGEAGGDGDRNNRRAEREVRNEVRGYDVSAVSGEEVVELSSW
EAEGTTSMGRRTSEARRRRSRR*
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