mRNA_C-linearis_contig83.16048.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig83.16048.1
Unique NamemRNA_C-linearis_contig83.16048.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig83.16048.1 vs. uniprot
Match: D7G7L1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7L1_ECTSI)

HSP 1 Score: 153 bits (387), Expect = 2.050e-39
Identity = 86/155 (55.48%), Postives = 111/155 (71.61%), Query Frame = 1 
Query:   76 QPPQWAIFIIAVIADLLAAGGFVPAQYKAILRSVVMYCLYREWGLAFACGFVLPRSLPLAGVCFLKKKWLALRSSAQGQLKAMAAAANDQEGDRSPNTGEAGGDGDRNNRRAEREVRN-EVRGYDVSAVSGEEVVELSSWEAEGTTSMGRRTSEA 537
            QPP+WAIF++AVIADL++A G +PA+  ++ R + ++ LYREW LAFACGFVLPR +PL  VCFLK+KW A  +SAQ +L A+ A AN+  G  S N  +AG  G+ +  R  R  +  EV GYDVS+VSGEEVVELSSW AE TTS+G   S +
Sbjct:   93 QPPEWAIFMVAVIADLVSAAGLLPAERLSLFRGLAVFLLYREWALAFACGFVLPRVVPLIAVCFLKQKWRAFNASAQERLNALVATANECAG-LSTNVPQAGMGGNTSAHRESRHTQEGEVSGYDVSSVSGEEVVELSSWAAE-TTSVGHGNSSS 245
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BLAST of mRNA_C-linearis_contig83.16048.1 vs. uniprot
Match: A0A6H5JGG0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGG0_9PHAE)

HSP 1 Score: 147 bits (371), Expect = 4.460e-38
Identity = 85/163 (52.15%), Postives = 114/163 (69.94%), Query Frame = 1 
Query:   52 GSAARADRQPPQWAIFIIAVIADLLAAGGFVPAQYKAILRSVVMYCLYREWGLAFACGFVLPRSLPLAGVCFLKKKWLALRSSAQGQLKAMAAAANDQEGDRSPNTGEAGGDGDRNNRRAEREVRN-EVRGYDVSAVSGEEVVELSSWEAEGTTSMGRRTSEA 537
            GS AR   QPP+WAIF++A+IADL++A G +P +  ++ R + ++ LY+EW LA ACGFVLPR +PL  VCFLK+KW A ++SAQ +L A+AA AN++ G  S N   AG  G+ +  R  R  +  +V GYDVS+VSGEEVVELSSW AE T S+G   S +
Sbjct:   10 GSTARL--QPPEWAIFMVAIIADLVSAAGLLPVERLSLFRGLAVFLLYKEWALASACGFVLPRVVPLIAVCFLKQKWRAFKASAQERLNALAATANERAGV-STNVPHAGMGGNTSAHRHSRHSQEGKVSGYDVSSVSGEEVVELSSWAAE-TASVGHDNSSS 168
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig83.16048.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G7L1_ECTSI2.050e-3955.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JGG0_9PHAE4.460e-3852.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig83contigC-linearis_contig83:335700..339682 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-22_001970.1
Exons3
Model size1578
Cds size519
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig83.16048.1prot_C-linearis_contig83.16048.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig83 335742..338665 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930622.8082323-UTR-C-linearis_contig83:335699..3357411622930622.8082323-UTR-C-linearis_contig83:335699..335741Chordaria linearis ClinC8C monoicousUTRC-linearis_contig83 335700..335741 +
1690881164.4565618-UTR-C-linearis_contig83:335699..3357411690881164.4565618-UTR-C-linearis_contig83:335699..335741Chordaria linearis ClinC8C monoicousUTRC-linearis_contig83 335700..335741 +
1622930622.8711767-UTR-C-linearis_contig83:338665..3396821622930622.8711767-UTR-C-linearis_contig83:338665..339682Chordaria linearis ClinC8C monoicousUTRC-linearis_contig83 338666..339682 +
1690881164.502229-UTR-C-linearis_contig83:338665..3396821690881164.502229-UTR-C-linearis_contig83:338665..339682Chordaria linearis ClinC8C monoicousUTRC-linearis_contig83 338666..339682 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930622.8264518-CDS-C-linearis_contig83:335741..3359931622930622.8264518-CDS-C-linearis_contig83:335741..335993Chordaria linearis ClinC8C monoicousCDSC-linearis_contig83 335742..335993 +
1690881164.4666255-CDS-C-linearis_contig83:335741..3359931690881164.4666255-CDS-C-linearis_contig83:335741..335993Chordaria linearis ClinC8C monoicousCDSC-linearis_contig83 335742..335993 +
1622930622.8400655-CDS-C-linearis_contig83:337836..3379741622930622.8400655-CDS-C-linearis_contig83:337836..337974Chordaria linearis ClinC8C monoicousCDSC-linearis_contig83 337837..337974 +
1690881164.47634-CDS-C-linearis_contig83:337836..3379741690881164.47634-CDS-C-linearis_contig83:337836..337974Chordaria linearis ClinC8C monoicousCDSC-linearis_contig83 337837..337974 +
1622930622.858337-CDS-C-linearis_contig83:338536..3386651622930622.858337-CDS-C-linearis_contig83:338536..338665Chordaria linearis ClinC8C monoicousCDSC-linearis_contig83 338537..338665 +
1690881164.4898863-CDS-C-linearis_contig83:338536..3386651690881164.4898863-CDS-C-linearis_contig83:338536..338665Chordaria linearis ClinC8C monoicousCDSC-linearis_contig83 338537..338665 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig83.16048.1

>prot_C-linearis_contig83.16048.1 ID=prot_C-linearis_contig83.16048.1|Name=mRNA_C-linearis_contig83.16048.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=173bp
MRDGSAARADRQPPQWAIFIIAVIADLLAAGGFVPAQYKAILRSVVMYCL
YREWGLAFACGFVLPRSLPLAGVCFLKKKWLALRSSAQGQLKAMAAAAND
QEGDRSPNTGEAGGDGDRNNRRAEREVRNEVRGYDVSAVSGEEVVELSSW
EAEGTTSMGRRTSEARRRRSRR*
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mRNA from alignment at C-linearis_contig83:335700..339682+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig83.16048.1 ID=mRNA_C-linearis_contig83.16048.1|Name=mRNA_C-linearis_contig83.16048.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3983bp|location=Sequence derived from alignment at C-linearis_contig83:335700..339682+ (Chordaria linearis ClinC8C monoicous)
ATTGGCTGGTTGCTACGGCTGCTTCAGCAGCAGGACTTCAACATGAGGGA
TGGAAGCGCAGCTAGAGCAGACCGTCAGCCCCCACAATGGGCGATTTTTA
TCATTGCCGTGATCGCTGACCTCCTGGCCGCTGGAGGGTTTGTTCCCGCT
CAGTACAAAGCCATCCTGCGGAGTGTCGTCATGTATTGCTTGTATCGCGA
GTGGGGCCTTGCGTTCGCTTGCGGCTTCGTCCTGCCGCGGAGCTTGCCGC
TGGCGGGAGTGTGCTTCTTGAAGAAGAAATGGCTAGCCCTCAGAGTGAGT
GTGAAACCCGCGGTGACCAAAATTAAAGTAAACTCGACGCGGTGTGAGAT
ATTCCGCTTCTTCTCTCAGCCCGGTCTCTTTCGCAAGTCTTACAGCCGGC
TGTCGTCTCTTGACTGTAAATATACGATGGGGTGGGGTTTACAAAGGTCG
TGCCTTGTATTGCGTGTGTTTGCGGAGTCCATCCCCGCAGAACGCAGAAC
ACAATCTCATCCCGCATTACATGCCGTTAGATACCATCCCCCCCCCTCGT
GCGAACGTTTTTTTTTATTTTGCTCGCCCATTGTTGTTTTTTCGTACTGT
CCGGTCGCCCCGGTGGACTAGTGGTTTAACCTCGAACCCACTAGCAGCAA
AGTCTGGAGCTCAATTCCAAGCAAAGGTGTTTCTTTTGCGACTTTGCAGG
TGAAAGCGATAACATAGCTGAAAAAGCTCGTGAGTAACAAACTTTGACTT
AGCACGTTGACGAGGGAAAGGGATGGCTGCACCCTTCTCGCGATAAAATC
CAAGGCAAGCACCGCAGGAGGAAGGTGGGGCAAAAAAGAAACAGAAAAGA
AGAAACCCCCCCAAGTGTTTACCCCCTCCTGTGTGATCCCGGTTGGTTCT
AGTTGTACAGAAAAATACACTGAACAAGTGTAGTACTCTAAATACACCGC
AACGTGTAGTACACGTCTCGCCTTGATCGGAAAGGAACTGTCGCCGAAAT
AAATGGGACGAAAACACACACACACACACACACACACACACTAGCCGGCC
TCTTCCTCTTAACTACAACTATTAATAGCTAGGCTGCCCTCCGGGGTCAC
ACAGGAGGGGGTGTCTCCACCTGCCTCCTGCGTGGGAAGTTGTGGATTGT
GGGTTGAAGGGGGGTGGTATCGACCGTGCTAACCAACAGATCGACGAAAA
GACGTCAGCCTTAGCGGGGGAAACACACATAACCGCGCAGTCCTAAGTTT
CAGATGTCCGTCCCGTGTGCGTGTGTGTGGGGGGGTCAAGGTGGGTGGGT
GGTCGTACAGCGGTAGAGCGACATTGTATACTTCGTTCCTGGTACATCGA
AAACTTGCTGCATAGCTTGTAAGTAAATACTTTCGACTTCATTGTTGACG
AGGGTGGGGAGTGCTGCACCTTGCTCGCGATAAAAAGCATCAAAGGCAGG
CATCGCAGGAGGTAGGTGGAGACATCCCCTCCTGTGTGACCCCGGATGGT
AGCCTAGCTAGTTGTAGTGAAGAGGAGGAGGCAGGCCACGAAAAATCACT
AATGGGCGAGAAAAAAAAACGTACATGCTTGGGTTCGATTGAGGGGTTGC
TGGACAGGAAATTTTGTGTGTTGTTTGAATCAGTACACGTGGAGAAGTAA
AGGGTACGCGTGCGGTCTTGAGAACCGTGCGTTGGCGCAACGCGTCTGGT
CGTTCGGTAGTGTCCCACGTGTTGCGGCACCTTTGGCAGCGTGCCGTGGT
CCTCTTTACCGGAAGGTTGCCCAGCCTAAATTTAGGCTTGAGCTACGAAG
AAGACCGCGAAATCCTCGAATCGAATCGTTTGGCGTCTTTGCTGCCTAGC
CCCGGGGATTGTGACTCCCATCCGTCGCGACCCTCAAAAACTGAACAGTG
TTGTTGCGACGATTCGGTTTGGGACCCACCCCGCCCCCCGATTGTGAGCG
TGCACACATTCACATACCTTTGCGTGTTGCCTCAACCGTGGCCGAGCCAC
CGATACCTCGTTGAATGCGTTCGTGTTCTGCACATCTCAGCTACTCACAC
CAAACCATTCGGAGTACAATAAGGCCCTCTTCGGTCGCTGTTTCCCGCAC
GTGCTTTTCTGGTGGTCCGTCCTTGTGCCTACCCCAGTCTTCTGCCCAGG
GACAGCTGAAAGCCATGGCCGCGGCTGCGAATGACCAGGAGGGAGACAGA
TCACCGAACACAGGGGAGGCAGGCGGGGATGGCGATCGAAATAACAGGCG
TGCTGAGCGGGAGGTGAGAAATGAGGTATCAGCACGAACGAGCAGCGTTG
ACGTGACTGCTGCTGCGCCCACACTTACGGGAGTGTCTTCGTGTCCCGCT
GGTGCTGCTACAGCAGCAGTAGTTGTTGTTGCGCATGTTATACAAATGGC
TGCGCTCGAGCCGGAAGATATGGGTCTTTCCCTGCGTTCTACGCTTGCCT
ACGTTGCTTTGGTTTTTGTGGTGTGACTTCATTCTCCCCGTTTTCGCTCG
GGTGTTTGTGTAGGGTACGAGTTGCGGGGCCTCCATTTTTTCATTTTTTC
TAGACTTGTTGCGGATGGGCCGCTCCTCTCTCCTCTCTCCTCCCCCTTCT
TTCTCTCCCTAACGAGCTGACACAAGTACGTACAGCAGTTGACAACACTC
TCTGGTCTCCGAAAGCGCGCACAAGGGCACAACGCGACGAACATTAACGT
TTCGGCCCGTCGCCAGCGCAGGCTATTTAGCTGTACTTTCAAGTACCTCG
TTTGTTGTACATGATATCTAACGCAACAGGCGTTTCCCCCGTCTGCCTCA
CAACCTCGTTTGCTGACGTATGTGCGTGATGTTTTAGGTCCGCGGGTACG
ATGTGTCTGCCGTGAGCGGTGAGGAGGTGGTGGAGCTCAGCTCGTGGGAA
GCAGAAGGCACGACTTCGATGGGTCGCAGAACATCGGAGGCGCGGCGAAG
AAGATCTCGGCGATAACGATTCGCCTCTTTGCTTTCGAAAAAACGGCAGC
ATCGAAAGGCGGACTCGTATGTGTGAATCTCCATTGTATACTAAAAAGTG
GAACCGAAAGGTGCATTCATTTGGCCGCGTGTCTGATTTATCTAAATACT
TGCTTTTGAAGCCGGTAATGTATGGCTCTAACAATACATCTATAGCATGG
TTTTTGATGGGATACTGCAGTGCCAGTATCTGCCGAAGGAGGAGGCAGGC
ATTTTTGGCAGGAGTTGGCGTTACCGTGAATGTGAGCGGAGTCTAGGTAC
GTTATCGTTGCCCCTTCGCGGATGCAGCGAAGGCGTGATATACGTGCGTA
CGAATATGGTTTTTGTCATGCGTAGGGATGAGAGGTGCCTCTGGCAATAG
CACCCGAGTGAAGTATCGATTCGGGAAGCGTCTGCTATGGGTCAGAGGCG
ACGAGCTGCGCTTCAAAAAGAGTCGCGTTTGATGTCCATCTCTCTCTTTG
CCTATCCGGGCCGCCCTCCTGTGTGTTCGCGAAAATCGCTTTTCGAGCCT
ATGTGGTGACGGAGACTCTAAACGGCTTGAACAAGCACACGCGGCGCCCC
TCTGTAATCAGTAGATTTGGATACCCGCGAGCGCTAGCGTACTGGCCGGG
TCCGTGTGCGCGTGGGGGCGAGAAACGTGGCTGCAGGCGCGCGCCCTCTT
AAGGTGTTTTTTCGGCGGTCTGACGACTTCTTCGGCGGCCATTCGGTGTG
ATCGTATGTAAGATTCGCGCTCTTTCCCTCTTGGAATCGGGTGTTCCCCG
CTGTGTGGAAAGGCATGGGCGGGAGGTGGCGAACGTTGCTTTCGTGGGCG
CCGAGTATTCCATAATGCTGTGTTCTTTTTGGAGCGTCGATTTTGCGGCA
GGCGTTTTGAGGGGAAAACGGAGCGAAAACGAGGCCGAAAACGATATGAT
CCCAGAAAAGGAGTTGAAAACGCGGCGAGAATGTGGTTTTATGTAAATAT
GTAGGTGGAAAAAATTCGGCAAGGAAAACTGAC
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Coding sequence (CDS) from alignment at C-linearis_contig83:335700..339682+

>mRNA_C-linearis_contig83.16048.1 ID=mRNA_C-linearis_contig83.16048.1|Name=mRNA_C-linearis_contig83.16048.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1038bp|location=Sequence derived from alignment at C-linearis_contig83:335700..339682+ (Chordaria linearis ClinC8C monoicous)
ATGAGGGATGGAAGCGCAGCTAGAGCAGACCGTCAGCCCCCACAATGGGC
GATTTTTATCATTGCCGTGATCGCTGACCTCCTGGCCGCTGGAGGGTTTG
TTCCCGCTCAGTACAAAGCCATCCTGCGGAGTGTCGTCATGTATTGCTTG
TATCGCGAGTGGGGCCTTGCGTTCGCTTGCGGCTTCGTCCTGCCGCGGAG
CTTGCCGCTGGCGGGAGTGTGCTTCTTGAAGAAGAAATGGCTAGCCCTCA
GAATGAGGGATGGAAGCGCAGCTAGAGCAGACCGTCAGCCCCCACAATGG
GCGATTTTTATCATTGCCGTGATCGCTGACCTCCTGGCCGCTGGAGGGTT
TGTTCCCGCTCAGTACAAAGCCATCCTGCGGAGTGTCGTCATGTATTGCT
TGTATCGCGAGTGGGGCCTTGCGTTCGCTTGCGGCTTCGTCCTGCCGCGG
AGCTTGCCGCTGGCGGGAGTGTGCTTCTTGAAGAAGAAATGGCTAGCCCT
CAGATCTTCTGCCCAGGGACAGCTGAAAGCCATGGCCGCGGCTGCGAATG
ACCAGGAGGGAGACAGATCACCGAACACAGGGGAGGCAGGCGGGGATGGC
GATCGAAATAACAGGCGTGCTGAGCGGGAGGTGAGAAATGAGTCTTCTGC
CCAGGGACAGCTGAAAGCCATGGCCGCGGCTGCGAATGACCAGGAGGGAG
ACAGATCACCGAACACAGGGGAGGCAGGCGGGGATGGCGATCGAAATAAC
AGGCGTGCTGAGCGGGAGGTGAGAAATGAGGTCCGCGGGTACGATGTGTC
TGCCGTGAGCGGTGAGGAGGTGGTGGAGCTCAGCTCGTGGGAAGCAGAAG
GCACGACTTCGATGGGTCGCAGAACATCGGAGGCGCGGCGAAGAAGATCT
CGGCGATAAGTCCGCGGGTACGATGTGTCTGCCGTGAGCGGTGAGGAGGT
GGTGGAGCTCAGCTCGTGGGAAGCAGAAGGCACGACTTCGATGGGTCGCA
GAACATCGGAGGCGCGGCGAAGAAGATCTCGGCGATAA
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