prot_C-linearis_contig80.15890.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig80.15890.1
Unique Nameprot_C-linearis_contig80.15890.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length657
Homology
BLAST of mRNA_C-linearis_contig80.15890.1 vs. uniprot
Match: A0A6H5JLQ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLQ8_9PHAE)

HSP 1 Score: 365 bits (938), Expect = 2.450e-114
Identity = 311/679 (45.80%), Postives = 359/679 (52.87%), Query Frame = 0
Query:   19 SSSRARERDGAASEMMHMSIDSQSFVNLGQLMGSRHGTAAAXXXXXXXXXXXXXAPFPGRLVDDLGTSCLSDDDDDSEGLRDFDQIFHPRVEQGGSTSSAWS-GRALYG----RRGSAADXXXXE---------SLLPALPSRSTTPGSPRGADSGSNKKDVADEP------------GWDEEDFES-ESMSEGGGVSGARGXXXXXGFSSGLRIDLTATSSAAETEDTCKVAAVMTPETQRASLDADGVEDSNTTATTATGTTGVQAGEATANTPLVLRDSWLHVPPGDDDTAAGEAESDSRAASTEVGDVPAGYAARIDPHQQRYCDAAAAAARARHTAAVALADCGECLVRAVDKASALAASRLQQVARVVREQAEAGADACARGQQVVVKAVDNVPQAPVRMWLVRIAGSLIIGAVLGGAAAYLALPGAMTMTSSASPCAAGAADTTSPWWDTGRGAGAGAGEPGEGAEQSFGDRLKKALFAARAGEAAAQQVLLEEVRNILAATGKSGGISAEQILRQFNAKRFKEASKAWSAAEGGSSSSSSAAGLDPLDSLFFTPPSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFIPEGAAPATECAGGASGSAFCSPDAAG-----DDVGARIYAA--RAKA------QQYRRPCPGG-WVC 656
            SS+  R R G     M MS+DSQSFVNLGQLMGSRHG    XXXXXXXXXX         L D   TS LSDDDDDSEGLRDFDQIFHP      STS A S GR LYG    R G AAD    +         S+LPALPSRS+TPGSPRG  + ++    + +P            GW E+DF S  S   GGG  G                +L   +       T   A + +PE Q     A   + S T+ T AT   G +   + ++TP  LR+SWLHVP GDDD    E                                           AA AL DCG+CLVR V +A ALA +R  +V R V+   +AGADAC+RGQ+  VKAVD+VPQAPVR+WL R+A S+++G VLG AA + AL  A T   S   CA   AD TSPWW TG   GAG      GA+QSFGDRL KALFAARAGEAAAQQ LLE++RNILAATG+SGGISAEQILRQFNAKRFKEASKAWSAAEG      + AG DPLD LFF PP+                                               IP GA PAT+CAGGASGS FCS D+       D V A +  +  R K       Q+YRR C GG WVC
Sbjct:   15 SSTHPRGRRGNGFRDMEMSVDSQSFVNLGQLMGSRHGXXXXXXXXXXXXXXTTRTG----LEDFACTSFLSDDDDDSEGLRDFDQIFHPAAT---STSGARSSGRELYGQQRHRGGGAADHQHGDGGVLDDDNDSVLPALPSRSSTPGSPRGYSTSNSGNSSSSKPYFIAPAASAAGAGWVEDDFGSGASARRGGGRVGHASCDHRLATGGAPENNLPQNTDITTHTKTTPAAGITSPEIQPGGSVA---QQSGTSQTAATA--GGETAASGSSTPF-LRESWLHVPVGDDDEIKSEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-XXAAAQALGDCGDCLVRGVGRAGALAKARALEVGRAVKVHVDAGADACSRGQKAAVKAVDSVPQAPVRVWLGRVALSIVVGIVLGSAATFCALRAATTKMGSV--CAG--ADATSPWWSTG---GAGDSVGAGGADQSFGDRLDKALFAARAGEAAAQQGLLEDMRNILAATGESGGISAEQILRQFNAKRFKEASKAWSAAEG------NVAGSDPLDPLFFAPPTAPVNPSASASQQPQPSSSS----------------------------IPHGATPATDCAGGASGSTFCSADSGXXXXXXDSVRANMAESVRRVKGFRDGGRQEYRRHCGGGGWVC 638          
BLAST of mRNA_C-linearis_contig80.15890.1 vs. uniprot
Match: D7G052_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G052_ECTSI)

HSP 1 Score: 184 bits (468), Expect = 1.230e-50
Identity = 135/262 (51.53%), Postives = 149/262 (56.87%), Query Frame = 0
Query:  411 VLGGAAAYLALPGAMTMTSSASPCAAGAADTTSPWWDTGRGAGAGAGEPGEGAEQSFGDRLKKALFAARAGEAAAQQVLLEEVRNILAATGKSGGISAEQILRQFNAKRFKEASKAWSAAEGGSSSSSSAAGLDPLDSLFFTPPSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFIPEGAAPATECAGGASGSAFCSPDAAG-------DDVGARIYAA--RAKA------QQYRRPCPGG-WVC 656
            +LG AA + AL  A T T S   CA   AD TSPWW TG   GAG      GA+QSFGDRL KALFAARAGEAAAQQ LLE++RNILAATG+SGGISAEQILRQFNAKRFKEASKAWSAAEG      + AG DPLD LFF PP+                                               +P GA PAT+CAGGASGSAFCS D+         D V A +  +  RAK       Q+YRR C GG WVC
Sbjct:    1 MLGSAATFCALRAATTKTGSV--CAG--ADATSPWWSTG---GAGDSVGAGGADQSFGDRLDKALFAARAGEAAAQQGLLEDMRNILAATGESGGISAEQILRQFNAKRFKEASKAWSAAEG------NVAGSDPLDPLFFAPPTAPVNPSASSSQQPQPSSSS----------------------------VPHGATPATDCAGGASGSAFCSADSXXXXXXXXXDSVRANMAESVRRAKGFRDGGRQEYRRHCGGGGWVC 221          
BLAST of mRNA_C-linearis_contig80.15890.1 vs. uniprot
Match: D7G053_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G053_ECTSI)

HSP 1 Score: 177 bits (448), Expect = 3.200e-45
Identity = 171/392 (43.62%), Postives = 205/392 (52.30%), Query Frame = 0
Query:   34 MHMSIDSQSFVNLGQLMGSRHGTAAAXXXXXXXXXXXXXAPFPGRLVDDLG-TSCLSDDDDDSEGLRDFDQIFHPRVEQGGSTSSAWS-GRALYG----RRGSAADXXXXE---------SLLPALPSRSTTPGSPRGADSGSNKKDVADEP------------GWDEEDFESESMSE-GGGVSGARGXXXXXGFSSGLRIDLTA-TSSAAETEDTCKVAA--VMTPETQRASLDADGVEDSNTTATTATGTTGVQAGEATANTPLVLRDSWLHVPPGDDDTAAGEAESDSRAASTEVGDVPAGYAARIDPHQQRYCDAAAAAARARHTAAVALADCGECLVRAVDKASALAASRLQQVARVVREQAEAGADACARGQQVVVKAVDNVPQAP 394
            M MS+DSQSFVNLGQLMGSRHG    XXXXXXXXXXXX        +DDL  TS LSDDDDDSEGLRDFDQIFHP      STS AWS GR LYG    R G A D    +         S+LPALPSRS+TPGSPRG  + ++    + +P            GW EEDF S + +  GGG  G             L  +LT  T +   T+ T   AA  + +PE Q        +   + T+ TA    G  A  + ++TP  LR+SWLHVP GD+D    EA +                                        AA AL DCG+CLVR V +A ALA +R  +  R V+ Q EAGADAC+RGQ+  VKAVD+VPQAP
Sbjct:   67 MEMSVDSQSFVNLGQLMGSRHGXXXXXXXXXXXXXXXXRTG-----LDDLACTSFLSDDDDDSEGLRDFDQIFHPAAT---STSGAWSSGRELYGQQRHRGGGAVDHQHGDGGAFDDDNDSVLPALPSRSSTPGSPRGYLTSNSGNSSSSKPYFVASAASAAGAGWVEEDFGSGAGARRGGGRVGHASCDHRLATGGALENNLTQNTDTTTHTKATAPAAAAAITSPEIQPGGS----LTQQSGTSRTAAAAGGEIAAASGSSTPF-LRESWLHVPIGDEDEIKSEA-AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAQALGDCGDCLVRGVGRAGALAKARALEFGRAVKVQVEAGADACSRGQKAAVKAVDSVPQAP 444          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig80.15890.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JLQ8_9PHAE2.450e-11445.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G052_ECTSI1.230e-5051.53Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G053_ECTSI3.200e-4543.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 422..656
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 398..421
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..397

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig80contigC-linearis_contig80:477332..480352 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig80.15890.1mRNA_C-linearis_contig80.15890.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig80 477194..481145 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig80.15890.1 ID=prot_C-linearis_contig80.15890.1|Name=mRNA_C-linearis_contig80.15890.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=657bp
MEAGSSSSRSAAHERADGSSSRARERDGAASEMMHMSIDSQSFVNLGQLM
GSRHGTAAAAGGGGGGSNSNSNAPFPGRLVDDLGTSCLSDDDDDSEGLRD
FDQIFHPRVEQGGSTSSAWSGRALYGRRGSAADDDDDESLLPALPSRSTT
PGSPRGADSGSNKKDVADEPGWDEEDFESESMSEGGGVSGARGGGRGQGF
SSGLRIDLTATSSAAETEDTCKVAAVMTPETQRASLDADGVEDSNTTATT
ATGTTGVQAGEATANTPLVLRDSWLHVPPGDDDTAAGEAESDSRAASTEV
GDVPAGYAARIDPHQQRYCDAAAAAARARHTAAVALADCGECLVRAVDKA
SALAASRLQQVARVVREQAEAGADACARGQQVVVKAVDNVPQAPVRMWLV
RIAGSLIIGAVLGGAAAYLALPGAMTMTSSASPCAAGAADTTSPWWDTGR
GAGAGAGEPGEGAEQSFGDRLKKALFAARAGEAAAQQVLLEEVRNILAAT
GKSGGISAEQILRQFNAKRFKEASKAWSAAEGGSSSSSSAAGLDPLDSLF
FTPPSTPTTPPTNPSTSPPPASSSSSSSSSSQHQQQHQHHHQPQHQPQQQ
PFIPEGAAPATECAGGASGSAFCSPDAAGDDVGARIYAARAKAQQYRRPC
PGGWVC*
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