mRNA_C-linearis_contig80.15890.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig80.15890.1
Unique NamemRNA_C-linearis_contig80.15890.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
[Close]
BLAST of mRNA_C-linearis_contig80.15890.1 vs. uniprot
Match: A0A6H5JLQ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLQ8_9PHAE)

HSP 1 Score: 365 bits (937), Expect = 8.410e-111
Identity = 311/679 (45.80%), Postives = 359/679 (52.87%), Query Frame = 1 
Query:  193 SSSRARERDGAASEMMHMSIDSQSFVNLGQLMGSRHGTAAAXXXXXXXXXXXXXAPFPGRLVDDLGTSCLSDDDDDSEGLRDFDQIFHPRVEQGGSTSSAWS-GRALYG----RRGSAADXXXXE---------SLLPALPSRSTTPGSPRGADSGSNKKDVADEP------------GWDEEDFES-ESMSEGGGVSGARGXXXXXGFSSGLRIDLTATSSAAETEDTCKVAAVMTPETQRASLDADGVEDSNTTATTATGTTGVQAGEATANTPLVLRDSWLHVPPGDDDTAAGEAESDSRAASTEVGDVPAGYAARIDPHQQRYCDAAAAAARARHTAAVALADCGECLVRAVDKASALAASRLQQVARVVREQAEAGADACARGQQVVVKAVDNVPQAPVRMWLVRIAGSLIIGAVLGGAAAYLALPGAMTMTSSASPCAAGAADTTSPWWDTGRGAGAGAGEPGEGAEQSFGDRLKKALFAARAGEAAAQQVLLEEVRNILAATGKSGGISAEQILRQFNAKRFKEASKAWSAAEGGSSSSSSAAGLDPLDSLFFTPPSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFIPEGAAPATECAGGASGSAFCSPDAAG-----DDVGARIYAA--RAKA------QQYRRPCPGG-WVC 2106
            SS+  R R G     M MS+DSQSFVNLGQLMGSRHG    XXXXXXXXXX         L D   TS LSDDDDDSEGLRDFDQIFHP      STS A S GR LYG    R G AAD    +         S+LPALPSRS+TPGSPRG  + ++    + +P            GW E+DF S  S   GGG  G                +L   +       T   A + +PE Q     A   + S T+ T AT   G +   + ++TP  LR+SWLHVP GDDD    E                                           AA AL DCG+CLVR V +A ALA +R  +V R V+   +AGADAC+RGQ+  VKAVD+VPQAPVR+WL R+A S+++G VLG AA + AL  A T   S   CA   AD TSPWW TG   GAG      GA+QSFGDRL KALFAARAGEAAAQQ LLE++RNILAATG+SGGISAEQILRQFNAKRFKEASKAWSAAEG      + AG DPLD LFF PP+                                               IP GA PAT+CAGGASGS FCS D+       D V A +  +  R K       Q+YRR C GG WVC
Sbjct:   15 SSTHPRGRRGNGFRDMEMSVDSQSFVNLGQLMGSRHGXXXXXXXXXXXXXXTTRTG----LEDFACTSFLSDDDDDSEGLRDFDQIFHPAAT---STSGARSSGRELYGQQRHRGGGAADHQHGDGGVLDDDNDSVLPALPSRSSTPGSPRGYSTSNSGNSSSSKPYFIAPAASAAGAGWVEDDFGSGASARRGGGRVGHASCDHRLATGGAPENNLPQNTDITTHTKTTPAAGITSPEIQPGGSVA---QQSGTSQTAATA--GGETAASGSSTPF-LRESWLHVPVGDDDEIKSEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-XXAAAQALGDCGDCLVRGVGRAGALAKARALEVGRAVKVHVDAGADACSRGQKAAVKAVDSVPQAPVRVWLGRVALSIVVGIVLGSAATFCALRAATTKMGSV--CAG--ADATSPWWSTG---GAGDSVGAGGADQSFGDRLDKALFAARAGEAAAQQGLLEDMRNILAATGESGGISAEQILRQFNAKRFKEASKAWSAAEG------NVAGSDPLDPLFFAPPTAPVNPSASASQQPQPSSSS----------------------------IPHGATPATDCAGGASGSTFCSADSGXXXXXXDSVRANMAESVRRVKGFRDGGRQEYRRHCGGGGWVC 638
[Close]
BLAST of mRNA_C-linearis_contig80.15890.1 vs. uniprot
Match: D7G052_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G052_ECTSI)

HSP 1 Score: 184 bits (467), Expect = 2.150e-49
Identity = 135/262 (51.53%), Postives = 149/262 (56.87%), Query Frame = 1 
Query: 1369 VLGGAAAYLALPGAMTMTSSASPCAAGAADTTSPWWDTGRGAGAGAGEPGEGAEQSFGDRLKKALFAARAGEAAAQQVLLEEVRNILAATGKSGGISAEQILRQFNAKRFKEASKAWSAAEGGSSSSSSAAGLDPLDSLFFTPPSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFIPEGAAPATECAGGASGSAFCSPDAAG-------DDVGARIYAA--RAKA------QQYRRPCPGG-WVC 2106
            +LG AA + AL  A T T S   CA   AD TSPWW TG   GAG      GA+QSFGDRL KALFAARAGEAAAQQ LLE++RNILAATG+SGGISAEQILRQFNAKRFKEASKAWSAAEG      + AG DPLD LFF PP+                                               +P GA PAT+CAGGASGSAFCS D+         D V A +  +  RAK       Q+YRR C GG WVC
Sbjct:    1 MLGSAATFCALRAATTKTGSV--CAG--ADATSPWWSTG---GAGDSVGAGGADQSFGDRLDKALFAARAGEAAAQQGLLEDMRNILAATGESGGISAEQILRQFNAKRFKEASKAWSAAEG------NVAGSDPLDPLFFAPPTAPVNPSASSSQQPQPSSSS----------------------------VPHGATPATDCAGGASGSAFCSADSXXXXXXXXXDSVRANMAESVRRAKGFRDGGRQEYRRHCGGGGWVC 221
[Close]
BLAST of mRNA_C-linearis_contig80.15890.1 vs. uniprot
Match: D7G053_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G053_ECTSI)

HSP 1 Score: 177 bits (448), Expect = 3.110e-44
Identity = 171/392 (43.62%), Postives = 205/392 (52.30%), Query Frame = 1 
Query:  238 MHMSIDSQSFVNLGQLMGSRHGTAAAXXXXXXXXXXXXXAPFPGRLVDDLG-TSCLSDDDDDSEGLRDFDQIFHPRVEQGGSTSSAWS-GRALYG----RRGSAADXXXXE---------SLLPALPSRSTTPGSPRGADSGSNKKDVADEP------------GWDEEDFESESMSE-GGGVSGARGXXXXXGFSSGLRIDLTA-TSSAAETEDTCKVAA--VMTPETQRASLDADGVEDSNTTATTATGTTGVQAGEATANTPLVLRDSWLHVPPGDDDTAAGEAESDSRAASTEVGDVPAGYAARIDPHQQRYCDAAAAAARARHTAAVALADCGECLVRAVDKASALAASRLQQVARVVREQAEAGADACARGQQVVVKAVDNVPQAP 1320
            M MS+DSQSFVNLGQLMGSRHG    XXXXXXXXXXXX        +DDL  TS LSDDDDDSEGLRDFDQIFHP      STS AWS GR LYG    R G A D    +         S+LPALPSRS+TPGSPRG  + ++    + +P            GW EEDF S + +  GGG  G             L  +LT  T +   T+ T   AA  + +PE Q        +   + T+ TA    G  A  + ++TP  LR+SWLHVP GD+D    EA +                                        AA AL DCG+CLVR V +A ALA +R  +  R V+ Q EAGADAC+RGQ+  VKAVD+VPQAP
Sbjct:   67 MEMSVDSQSFVNLGQLMGSRHGXXXXXXXXXXXXXXXXRTG-----LDDLACTSFLSDDDDDSEGLRDFDQIFHPAAT---STSGAWSSGRELYGQQRHRGGGAVDHQHGDGGAFDDDNDSVLPALPSRSSTPGSPRGYLTSNSGNSSSSKPYFVASAASAAGAGWVEEDFGSGAGARRGGGRVGHASCDHRLATGGALENNLTQNTDTTTHTKATAPAAAAAITSPEIQPGGS----LTQQSGTSRTAAAAGGEIAAASGSSTPF-LRESWLHVPIGDEDEIKSEA-AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAQALGDCGDCLVRGVGRAGALAKARALEFGRAVKVQVEAGADACSRGQKAAVKAVDSVPQAP 444
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig80.15890.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JLQ8_9PHAE8.410e-11145.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G052_ECTSI2.150e-4951.53Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G053_ECTSI3.110e-4443.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig80contigC-linearis_contig80:477194..481145 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-12_007270.1
Exons3
Model size2902
Cds size1971
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig80.15890.1prot_C-linearis_contig80.15890.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig80 477332..480352 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930590.921456-UTR-C-linearis_contig80:477193..4773311622930590.921456-UTR-C-linearis_contig80:477193..477331Chordaria linearis ClinC8C monoicousUTRC-linearis_contig80 477194..477331 +
1690881148.8385906-UTR-C-linearis_contig80:477193..4773311690881148.8385906-UTR-C-linearis_contig80:477193..477331Chordaria linearis ClinC8C monoicousUTRC-linearis_contig80 477194..477331 +
1622930591.000988-UTR-C-linearis_contig80:480352..4811451622930591.000988-UTR-C-linearis_contig80:480352..481145Chordaria linearis ClinC8C monoicousUTRC-linearis_contig80 480353..481145 +
1690881148.8788881-UTR-C-linearis_contig80:480352..4811451690881148.8788881-UTR-C-linearis_contig80:480352..481145Chordaria linearis ClinC8C monoicousUTRC-linearis_contig80 480353..481145 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930590.9399083-CDS-C-linearis_contig80:477331..4785141622930590.9399083-CDS-C-linearis_contig80:477331..478514Chordaria linearis ClinC8C monoicousCDSC-linearis_contig80 477332..478514 +
1690881148.8493824-CDS-C-linearis_contig80:477331..4785141690881148.8493824-CDS-C-linearis_contig80:477331..478514Chordaria linearis ClinC8C monoicousCDSC-linearis_contig80 477332..478514 +
1622930590.961439-CDS-C-linearis_contig80:479287..4795741622930590.961439-CDS-C-linearis_contig80:479287..479574Chordaria linearis ClinC8C monoicousCDSC-linearis_contig80 479288..479574 +
1690881148.8593328-CDS-C-linearis_contig80:479287..4795741690881148.8593328-CDS-C-linearis_contig80:479287..479574Chordaria linearis ClinC8C monoicousCDSC-linearis_contig80 479288..479574 +
1622930590.9785848-CDS-C-linearis_contig80:479851..4803521622930590.9785848-CDS-C-linearis_contig80:479851..480352Chordaria linearis ClinC8C monoicousCDSC-linearis_contig80 479852..480352 +
1690881148.8689485-CDS-C-linearis_contig80:479851..4803521690881148.8689485-CDS-C-linearis_contig80:479851..480352Chordaria linearis ClinC8C monoicousCDSC-linearis_contig80 479852..480352 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig80.15890.1

>prot_C-linearis_contig80.15890.1 ID=prot_C-linearis_contig80.15890.1|Name=mRNA_C-linearis_contig80.15890.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=657bp
MEAGSSSSRSAAHERADGSSSRARERDGAASEMMHMSIDSQSFVNLGQLM
GSRHGTAAAAGGGGGGSNSNSNAPFPGRLVDDLGTSCLSDDDDDSEGLRD
FDQIFHPRVEQGGSTSSAWSGRALYGRRGSAADDDDDESLLPALPSRSTT
PGSPRGADSGSNKKDVADEPGWDEEDFESESMSEGGGVSGARGGGRGQGF
SSGLRIDLTATSSAAETEDTCKVAAVMTPETQRASLDADGVEDSNTTATT
ATGTTGVQAGEATANTPLVLRDSWLHVPPGDDDTAAGEAESDSRAASTEV
GDVPAGYAARIDPHQQRYCDAAAAAARARHTAAVALADCGECLVRAVDKA
SALAASRLQQVARVVREQAEAGADACARGQQVVVKAVDNVPQAPVRMWLV
RIAGSLIIGAVLGGAAAYLALPGAMTMTSSASPCAAGAADTTSPWWDTGR
GAGAGAGEPGEGAEQSFGDRLKKALFAARAGEAAAQQVLLEEVRNILAAT
GKSGGISAEQILRQFNAKRFKEASKAWSAAEGGSSSSSSAAGLDPLDSLF
FTPPSTPTTPPTNPSTSPPPASSSSSSSSSSQHQQQHQHHHQPQHQPQQQ
PFIPEGAAPATECAGGASGSAFCSPDAAGDDVGARIYAARAKAQQYRRPC
PGGWVC*
back to top

mRNA from alignment at C-linearis_contig80:477194..481145+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig80.15890.1 ID=mRNA_C-linearis_contig80.15890.1|Name=mRNA_C-linearis_contig80.15890.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3952bp|location=Sequence derived from alignment at C-linearis_contig80:477194..481145+ (Chordaria linearis ClinC8C monoicous)
CTCTCTCTCGCAACACCCCGTGCACGGCGGCAACTAACCCCCCTCTACAC
GGGCCGCTGCCCCACCGAGCCTCTCTCCCTTCTGCCGTCGGGCTCTTGTT
TATTTCCCTTCAACACACACTTCACAACTTGATTGAGCATGGAGGCTGGT
TCGTCGTCGTCACGCTCGGCAGCACACGAACGCGCCGACGGCAGCAGCAG
CCGTGCCAGAGAGAGGGACGGAGCGGCCTCCGAGATGATGCACATGTCGA
TCGACTCTCAGAGCTTCGTGAACCTCGGCCAGCTCATGGGCAGCCGGCAC
GGCACGGCCGCCGCCGCCGGCGGTGGCGGCGGCGGCAGCAACAGCAACTC
GAACGCCCCCTTCCCGGGAAGACTCGTTGATGACCTCGGCACGTCTTGCC
TCTCCGATGATGATGATGACTCCGAAGGGCTGCGCGACTTCGACCAAATC
TTCCACCCCAGGGTAGAGCAGGGAGGATCCACCTCGAGCGCGTGGTCGGG
CCGCGCGCTGTACGGTCGCCGCGGGAGCGCCGCGGATGACGACGATGACG
AGAGCCTTTTGCCCGCTCTCCCCTCCCGCAGCACGACGCCCGGATCTCCA
AGGGGCGCGGACTCGGGCTCAAACAAGAAGGACGTGGCGGATGAGCCCGG
GTGGGACGAAGAGGACTTTGAGAGCGAATCCATGAGTGAGGGTGGCGGAG
TTAGCGGAGCTCGTGGTGGCGGGAGGGGGCAAGGCTTCTCCTCGGGTCTT
CGCATCGATTTGACTGCTACGAGTTCTGCCGCAGAAACCGAGGACACCTG
CAAGGTTGCTGCTGTCATGACTCCCGAGACTCAACGCGCCAGCCTTGACG
CCGATGGTGTTGAGGACAGCAACACCACCGCCACCACCGCCACCGGGACG
ACTGGAGTGCAAGCAGGAGAGGCGACCGCGAACACCCCGCTTGTTCTGCG
CGACTCTTGGCTTCACGTCCCGCCGGGCGATGATGACACCGCGGCGGGCG
AGGCAGAGTCGGACAGCAGGGCAGCAAGTACGGAAGTCGGCGACGTGCCG
GCGGGATACGCGGCGAGGATCGACCCCCACCAACAGCGTTACTGCGATGC
CGCGGCAGCAGCGGCGAGGGCCCGGCACACCGCCGCCGTCGCACTGGCGG
ACTGCGGGGAGTGCCTCGTGCGCGCGGTGGACAAGGCGTCCGCGCTAGCA
GCCTCCAGGCTCCAGCAGGTGGCGCGGGTGGTGAGGGAGCAGGCGGAGGC
CGGGGCGGACGCGTGCGCGCGGGGGCAGCAGGTCGTGGTCAAGGCCGTGG
ACAACGTGCCGCAGGCTCCCGGTACGTAGGGGAGAGAGCCAGTTATTAAG
TGCACAGCAGTGGTTCGAGCCGCGATGTAAACGTTGATGTTGGAGCATGA
AAAAACATGTGTTTAATCCACTTGTAAGTAGACTTACAGACCAACCCGGC
ATAAAGAATGGCGTGTATCTCCTGATGTGATCGTGTAAAAGTGATGTGAT
CGTGTAAAAGAGTATCCTAGGACCAACTGAGTGCCCGCTCACGCGAGCAA
GTCGCCCCTCCCCCTCACGCCGCTCTTGTAGTATACGGCGTACGAAACGG
AGGGCGACTTCAAGAAAACGCTCACCCAAATAACTTCGAGTGTGCGCCGC
ATGCATCTTCCGGCCTTGTTGAACCTTTCGCGGATCGTTGCGCGCAGCAG
CACTATTAATAGACGTGCGGGCCATAGTTGCGACGCACCATACTGGCTGG
GAACCCGCAGGCTGGTAGGTACCACACGAGCGAGCGCTTGCCGTGGTTGC
GATGCTTCCGGGCGGCGCTTCGGGTGTTTCGCTGTTTTTAGGTGCCTGTC
GTTCCCACGGCGTAAGTATGTCCGCATCCCAGCACACACGTCCCTTATTT
TGCCGGGCCAAGCCCAGCAAACCGTTGAGACTTGGCTGGATCAGGTGTTC
AACTAAGCCCATCACCACCGCCAACAAATCCAGCGCCCCACCCCCCTCCC
TCCCCGCTGCAATCCACCCCCGGCCTAAACCCTGAATCGCACCATACACT
CCGCCTCTGCGCTTGCCGCCGCCCTCACTAACCCTCCCCAACAGTCCGCA
TGTGGCTGGTGCGGATCGCGGGATCCCTGATCATCGGAGCCGTCCTCGGC
GGAGCCGCCGCCTACCTCGCCCTTCCCGGCGCCATGACTATGACCAGCTC
TGCGTCTCCGTGCGCCGCCGGTGCCGCCGACACCACGTCACCGTGGTGGG
ACACGGGGCGGGGAGCGGGCGCGGGCGCGGGCGAGCCGGGGGAAGGGGCG
GAGCAGAGCTTCGGAGACCGGCTGAAGAAGGCTCTGTTCGCGGCGAGGGC
GGGAGAAGCGGCGGCGCAGCAGGTTTTGCTGGTGAGAACTTAGTTTTTTT
GCGGCGGTTATTGGTGGTCGCGGGGATATTTTTGCGCGCGGGCCAGGGGG
GCAGGGGGGGCAGGGCATTCGACGTTGTGCCGGTGACGAATCGGATTTTG
CCCTCGTCTTGCAGGAATTTTTTGTTGATGTTCTCGCTCTTTTCCCGCGC
GACGACAGTGCTACCCACCGTCCCTGGATCTCAAACTGGCTCTCGACGCG
TGCTCCTTCGACATCACCGCGCCGTGTTTTTTTCTCCCCTTTTTCCATGC
GCGCGCAGGAGGAGGTTCGCAACATCCTGGCCGCCACCGGCAAGAGCGGC
GGCATCAGCGCCGAGCAGATCCTCCGCCAGTTCAACGCCAAGCGCTTCAA
GGAGGCGTCCAAGGCCTGGTCGGCCGCCGAGGGTGGCAGCAGCAGCAGCA
GTAGTGCCGCGGGCTTGGACCCCCTGGACTCGCTCTTCTTCACGCCGCCG
AGCACCCCGACCACCCCCCCGACCAACCCATCCACGTCTCCCCCGCCCGC
CTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCCAGCACCAGCAGCAACACC
AGCACCATCACCAGCCCCAGCACCAGCCCCAGCAGCAACCGTTCATTCCC
GAAGGTGCCGCGCCGGCGACGGAATGCGCCGGCGGCGCCAGCGGCAGCGC
CTTCTGCTCGCCGGACGCGGCCGGCGACGATGTCGGGGCCCGCATATACG
CGGCTCGCGCCAAGGCTCAGCAGTACCGCCGCCCGTGCCCTGGAGGGTGG
GTGTGCTAAGTTTACGACGAAATCTTGAAGGAGAGAGTCACAGGGGTGCG
CGTCGATTTCGCTGGTCGCATAGGGGGACGCGCACACATGGCAACGTGTG
GCGGGGTCTTTCTCGGAGTGTTTTGAATATGGGCAGGCGGGAGGCAAACA
CGCTGAGGAAAAAGGAGAGTGGTTCTGGAAGGAAGCAATGGAAGAAGTAG
GCTCCAGCTGGACGATATAGGAGGTGGTGGTTTTGATTCGAGGCGGCGAG
CCCCTCTTTCTTTGTCAGTATCCTGGTCCCATGGGGCTAATCGACAGCAG
CAGCCGCCGCGACAGCAACCAAAACAGCGGCACCAGCAACAGCAGCAGGT
GTTTTTTCAGCATGGAGGGATGGCAGAAGGTTGCGCGGTTTGCCGCTGTT
GGCCATAAGAGGACGCATGCACGTTTTGGCGGGCGTTGGAGGGACATCTG
GCCTGGCCTTCTTTCTTGCTGTGTCTTTTCACGGCAGCTTGTTTTGAACG
TGCTCGAGGCTCGCAGGAACCAACACTCGACCCCCGAGGTGATGAACATT
GTTTGCGTGTGGTGTTTGTTTTTCTTCATTGGGAAACACTGAGGTAAAAA
CGAAAGTGCCTATTGTATGTAGGCGGAACGGCAGCGATGAAGAAGGGAGC
CCGCTCCGCCCCGACTGGAAACTAAGAGAGGAAAAAGATGGGTTGTACAG
GAGGCGGGAAAAGGAAAAGGAGGTTGTATAATCTCCTTGCACCACAGCCT
GAGAAGTAAACGAAGAGGGGGGGGGCAAGATGATTGCTTGTATACGAGGT
GG
back to top

Coding sequence (CDS) from alignment at C-linearis_contig80:477194..481145+

>mRNA_C-linearis_contig80.15890.1 ID=mRNA_C-linearis_contig80.15890.1|Name=mRNA_C-linearis_contig80.15890.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=3942bp|location=Sequence derived from alignment at C-linearis_contig80:477194..481145+ (Chordaria linearis ClinC8C monoicous)
ATGGAGGCTGGTTCGTCGTCGTCACGCTCGGCAGCACACGAACGCGCCGA
CGGCAGCAGCAGCCGTGCCAGAGAGAGGGACGGAGCGGCCTCCGAGATGA
TGCACATGTCGATCGACTCTCAGAGCTTCGTGAACCTCGGCCAGCTCATG
GGCAGCCGGCACGGCACGGCCGCCGCCGCCGGCGGTGGCGGCGGCGGCAG
CAACAGCAACTCGAACGCCCCCTTCCCGGGAAGACTCGTTGATGACCTCG
GCACGTCTTGCCTCTCCGATGATGATGATGACTCCGAAGGGCTGCGCGAC
TTCGACCAAATCTTCCACCCCAGGGTAGAGCAGGGAGGATCCACCTCGAG
CGCGTGGTCGGGCCGCGCGCTGTACGGTCGCCGCGGGAGCGCCGCGGATG
ACGACGATGACGAGAGCCTTTTGCCCGCTCTCCCCTCCCGCAGCACGACG
CCCGGATCTCCAAGGGGCGCGGACTCGGGCTCAAACAAGAAGGACGTGGC
GGATGAGCCCGGGTGGGACGAAGAGGACTTTGAGAGCGAATCCATGAGTG
AGGGTGGCGGAGTTAGCGGAGCTCGTGGTGGCGGGAGGGGGCAAGGCTTC
TCCTCGGGTCTTCGCATCGATTTGACTGCTACGAGTTCTGCCGCAGAAAC
CGAGGACACCTGCAAGGTTGCTGCTGTCATGACTCCCGAGACTCAACGCG
CCAGCCTTGACGCCGATGGTGTTGAGGACAGCAACACCACCGCCACCACC
GCCACCGGGACGACTGGAGTGCAAGCAGGAGAGGCGACCGCGAACACCCC
GCTTGTTCTGCGCGACTCTTGGCTTCACGTCCCGCCGGGCGATGATGACA
CCGCGGCGGGCGAGGCAGAGTCGGACAGCAGGGCAGCAAGTACGGAAGTC
GGCGACGTGCCGGCGGGATACGCGGCGAGGATCGACCCCCACCAACAGCG
TTACTGCGATGCCGCGGCAGCAGCGGCGAGGGCCCGGCACACCGCCGCCG
TCGCACTGGCGGACTGCGGGGAGTGCCTCGTGCGCGCGGTGGACAAGGCG
TCCGCGCTAGCAGCCTCCAGGCTCCAGCAGGTGGCGCGGGTGGTGAGGGA
GCAGGCGGAGGCCGGGGCGGACGCGTGCGCGCGGGGGCAGCAGGTCGTGG
TCAAGGCCGTGGACAACGTGCCGCAGGCTCCCGATGGAGGCTGGTTCGTC
GTCGTCACGCTCGGCAGCACACGAACGCGCCGACGGCAGCAGCAGCCGTG
CCAGAGAGAGGGACGGAGCGGCCTCCGAGATGATGCACATGTCGATCGAC
TCTCAGAGCTTCGTGAACCTCGGCCAGCTCATGGGCAGCCGGCACGGCAC
GGCCGCCGCCGCCGGCGGTGGCGGCGGCGGCAGCAACAGCAACTCGAACG
CCCCCTTCCCGGGAAGACTCGTTGATGACCTCGGCACGTCTTGCCTCTCC
GATGATGATGATGACTCCGAAGGGCTGCGCGACTTCGACCAAATCTTCCA
CCCCAGGGTAGAGCAGGGAGGATCCACCTCGAGCGCGTGGTCGGGCCGCG
CGCTGTACGGTCGCCGCGGGAGCGCCGCGGATGACGACGATGACGAGAGC
CTTTTGCCCGCTCTCCCCTCCCGCAGCACGACGCCCGGATCTCCAAGGGG
CGCGGACTCGGGCTCAAACAAGAAGGACGTGGCGGATGAGCCCGGGTGGG
ACGAAGAGGACTTTGAGAGCGAATCCATGAGTGAGGGTGGCGGAGTTAGC
GGAGCTCGTGGTGGCGGGAGGGGGCAAGGCTTCTCCTCGGGTCTTCGCAT
CGATTTGACTGCTACGAGTTCTGCCGCAGAAACCGAGGACACCTGCAAGG
TTGCTGCTGTCATGACTCCCGAGACTCAACGCGCCAGCCTTGACGCCGAT
GGTGTTGAGGACAGCAACACCACCGCCACCACCGCCACCGGGACGACTGG
AGTGCAAGCAGGAGAGGCGACCGCGAACACCCCGCTTGTTCTGCGCGACT
CTTGGCTTCACGTCCCGCCGGGCGATGATGACACCGCGGCGGGCGAGGCA
GAGTCGGACAGCAGGGCAGCAAGTACGGAAGTCGGCGACGTGCCGGCGGG
ATACGCGGCGAGGATCGACCCCCACCAACAGCGTTACTGCGATGCCGCGG
CAGCAGCGGCGAGGGCCCGGCACACCGCCGCCGTCGCACTGGCGGACTGC
GGGGAGTGCCTCGTGCGCGCGGTGGACAAGGCGTCCGCGCTAGCAGCCTC
CAGGCTCCAGCAGGTGGCGCGGGTGGTGAGGGAGCAGGCGGAGGCCGGGG
CGGACGCGTGCGCGCGGGGGCAGCAGGTCGTGGTCAAGGCCGTGGACAAC
GTGCCGCAGGCTCCCGTCCGCATGTGGCTGGTGCGGATCGCGGGATCCCT
GATCATCGGAGCCGTCCTCGGCGGAGCCGCCGCCTACCTCGCCCTTCCCG
GCGCCATGACTATGACCAGCTCTGCGTCTCCGTGCGCCGCCGGTGCCGCC
GACACCACGTCACCGTGGTGGGACACGGGGCGGGGAGCGGGCGCGGGCGC
GGGCGAGCCGGGGGAAGGGGCGGAGCAGAGCTTCGGAGACCGGCTGAAGA
AGGCTCTGTTCGCGGCGAGGGCGGGAGAAGCGGCGGCGCAGCAGGTTTTG
CTGTCCGCATGTGGCTGGTGCGGATCGCGGGATCCCTGATCATCGGAGCC
GTCCTCGGCGGAGCCGCCGCCTACCTCGCCCTTCCCGGCGCCATGACTAT
GACCAGCTCTGCGTCTCCGTGCGCCGCCGGTGCCGCCGACACCACGTCAC
CGTGGTGGGACACGGGGCGGGGAGCGGGCGCGGGCGCGGGCGAGCCGGGG
GAAGGGGCGGAGCAGAGCTTCGGAGACCGGCTGAAGAAGGCTCTGTTCGC
GGCGAGGGCGGGAGAAGCGGCGGCGCAGCAGGTTTTGCTGGAGGAGGTTC
GCAACATCCTGGCCGCCACCGGCAAGAGCGGCGGCATCAGCGCCGAGCAG
ATCCTCCGCCAGTTCAACGCCAAGCGCTTCAAGGAGGCGTCCAAGGCCTG
GTCGGCCGCCGAGGGTGGCAGCAGCAGCAGCAGTAGTGCCGCGGGCTTGG
ACCCCCTGGACTCGCTCTTCTTCACGCCGCCGAGCACCCCGACCACCCCC
CCGACCAACCCATCCACGTCTCCCCCGCCCGCCTCCTCCTCCTCCTCCTC
CTCCTCCTCCTCCCAGCACCAGCAGCAACACCAGCACCATCACCAGCCCC
AGCACCAGCCCCAGCAGCAACCGTTCATTCCCGAAGGTGCCGCGCCGGCG
ACGGAATGCGCCGGCGGCGCCAGCGGCAGCGCCTTCTGCTCGCCGGACGC
GGCCGGCGACGATGTCGGGGCCCGCATATACGCGGCTCGCGCCAAGGCTC
AGCAGTACCGCCGCCCGTGCCCTGGAGGGTGGGTGTGCTAAGAGGAGGTT
CGCAACATCCTGGCCGCCACCGGCAAGAGCGGCGGCATCAGCGCCGAGCA
GATCCTCCGCCAGTTCAACGCCAAGCGCTTCAAGGAGGCGTCCAAGGCCT
GGTCGGCCGCCGAGGGTGGCAGCAGCAGCAGCAGTAGTGCCGCGGGCTTG
GACCCCCTGGACTCGCTCTTCTTCACGCCGCCGAGCACCCCGACCACCCC
CCCGACCAACCCATCCACGTCTCCCCCGCCCGCCTCCTCCTCCTCCTCCT
CCTCCTCCTCCTCCCAGCACCAGCAGCAACACCAGCACCATCACCAGCCC
CAGCACCAGCCCCAGCAGCAACCGTTCATTCCCGAAGGTGCCGCGCCGGC
GACGGAATGCGCCGGCGGCGCCAGCGGCAGCGCCTTCTGCTCGCCGGACG
CGGCCGGCGACGATGTCGGGGCCCGCATATACGCGGCTCGCGCCAAGGCT
CAGCAGTACCGCCGCCCGTGCCCTGGAGGGTGGGTGTGCTAA
back to top