prot_C-linearis_contig80.15857.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig80.15857.1
Unique Nameprot_C-linearis_contig80.15857.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length714
Homology
BLAST of mRNA_C-linearis_contig80.15857.1 vs. uniprot
Match: D7FI05_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI05_ECTSI)

HSP 1 Score: 879 bits (2271), Expect = 6.160e-304
Identity = 486/706 (68.84%), Postives = 535/706 (75.78%), Query Frame = 0
Query:    5 VEYAPRACESMEDCDDGDACSFDACVEGKCVHTGVQEGYGCQAQPAGATWRADAYRYFQVVGRGDPAEQAEFVAEVQAQNRLSSVTFADDYPVERHTGWGEFPVYGTKYEDIFISPNGALL---LQTVTTGGLSAVSPSTEAFFPVLKADWNPSDRRAASAVLLMIDDDQFSVLYEDVFLFKRSALATPSTFSTTVFPDGSLRYRYIRIGDRADWTVGVSGNSFVSPTIRNRHVRQAEFIQTDEDGLPVTSAXXXXXXXXXXXXXXXXXTSTPSAPSSALNATDADGGSPDGPEDISGDATSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGG-----DAGTEVTLCRAPTLACLGRACGKAGSEVFVLWEGFACRAAAAMNVSFACRIGGLEVPAVSLDGSSSXXXXXXXLDLDWTGVAGGDREEAWGPDWIGA-GSGGLVCEVPRLEWAEEGQEPAVMVPVEVVWFSTGQASASAQRQVSQGAADVAVRGLSVMGDAGVVNSHVLTFRYFREDAEAPNCGCSPVPRQADLACDSCLVCGGDDSTKDCGGFCHGEAYVSPCGKCAGGMTGVEGDLYCDEYREYLDGPAQAALLSLSQSIMMLVALSIMTAFLMTCLFLARALMLRGVLAVEGDRHGTLRRRVFSRHRGLSPWELECLETFEYS-AVGLAPSEANGDDEISYTEVVGAGD---IELRGEHSS 697
            VEYAPR C S EDCDDGDACSFDACVEG CVHTGVQEGYGCQAQP  ATWR D YRYFQ+V R DP EQAEFVAEV+AQN+LSSVTFADDYPVE H  W EFPVYGTKYED++ISPNGAL    LQTV  GGLSAVSPSTEA+FPVLKADWNPSD RAAS+VL+MI++DQFSVLY+DVFLFKRSA ATPSTFSTTVFPDGSLRYRY+RIGD+ADWT GVSGNSFVSPTIRNRHVRQ++FIQ DE+GLP                       + +APS A +AT         P         XXXXXXXXXXXXX                    G      D  TEVTLCRAPTLACL RACGKAGSEV VLWEG  CRAAA++NV+F+CRIGGLEVPAVSL+G ++              +AGG  EEAWGPDW+G  G GGLVCEVPRLEWAE GQ+ AVMVPVEV+W    QAS SA+ QV  GAA V V GLSV+GDAG++NSHVL FRY+R+DAEAP+CGCS  PRQ +L CDSCLVCGGD STKDCGGFCHGEA VSPCG+C+GGMTGV G L+CDEY EYLDGPA+AALLSLSQSIMMLVALSIMTAFL  CLFLARALMLRGVLA+EGDRHGTLRRR FSRHRGLSP EL+CLET EYS A+ +   +   DD     +  G GD   +EL GE  S
Sbjct:  475 VEYAPRDCHSAEDCDDGDACSFDACVEGSCVHTGVQEGYGCQAQPVHATWRGDTYRYFQIVDRADPVEQAEFVAEVRAQNKLSSVTFADDYPVEFHN-WREFPVYGTKYEDVYISPNGALFVPPLQTVVPGGLSAVSPSTEAYFPVLKADWNPSDSRAASSVLVMIEEDQFSVLYQDVFLFKRSASATPSTFSTTVFPDGSLRYRYMRIGDKADWTAGVSGNSFVSPTIRNRHVRQSQFIQMDENGLP-----------------------SAAAPSEAFSAT---------PTXXXXXXXXXXXXXXXXXXXXXDDASEVQGEGGGSAVTIIANGDGAEEEDGDTEVTLCRAPTLACLARACGKAGSEVPVLWEGVGCRAAASLNVTFSCRIGGLEVPAVSLEGGATASSSGS--------LAGGFEEEAWGPDWVGGEGGGGLVCEVPRLEWAEAGQDEAVMVPVEVLWSLPEQASDSAKEQVRLGAAGVGVHGLSVLGDAGLINSHVLAFRYYRDDAEAPDCGCSTSPRQTELTCDSCLVCGGDGSTKDCGGFCHGEASVSPCGECSGGMTGVTGGLWCDEYGEYLDGPAEAALLSLSQSIMMLVALSIMTAFLTMCLFLARALMLRGVLAMEGDRHGTLRRRAFSRHRGLSPSELDCLETVEYSTAIDIVSKDKGNDDNSCAAD--GGGDSSGVELIGEKVS 1137          
BLAST of mRNA_C-linearis_contig80.15857.1 vs. uniprot
Match: A0A6H5LLL6_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LLL6_9PHAE)

HSP 1 Score: 776 bits (2005), Expect = 1.180e-269
Identity = 435/664 (65.51%), Postives = 489/664 (73.64%), Query Frame = 0
Query:   63 QVVGRGDPAEQAEFVAEVQAQNRLSSVTFADDYPVERHTGWGEFPVYGTKYEDIFISPNGALL---LQTVTTGGLSAVSPSTEAFFPVLKADWNPSDRRAASAVLLMIDDDQFSVLYEDVFLFKRSALATPSTFSTTVFPDGSLRYRYIRIGDRADWTVGVSGNSFVSPTIRNRHVRQAEFIQTDEDGLPVTSAXXXXXXXXXXXXXXXXXTSTPSAP-SSALNATDADGGSPDGPEDISGDATSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGDAGTEVTLCRAPTLACLGRACGKAGSEVFVLWEGFACRAAAAMNVSFACRIGGLEVPAVSLDGSSSXXXXXXXLDLDWTGVAGGDREEAWGPDWIGAG-SGGLVCEVPRLEWAEEGQEPAVMVPVEVVWFSTGQASASAQRQVSQGAADVAVRGLSVMGDAGVVNSHVLTFRYFREDAEAPNCGCSPVPRQADLACDSCLVCGGDDSTKDCGGFCHGEAYVSPCGKCAGGMTGVEGDLYCDEYREYLDGPAQAALLSLSQSIMMLVALSIMTAFLMTCLFLARALMLRGVLAVEGDRHGTLRRRVFSRHRGLSPWELECLETFEYSAVGLAPSEANGDDEISYTEVVGAGD---IELRGEH----SSVSVRGAGSERVGDEVNG 714
            Q+V R DP EQAEFVAEV+AQN+LSSVTFADDYPVE H  W EFPVYGTKYED++ISPNGAL    LQTV  GGLSAVSPSTEA+FPVLKADWNPSD RAAS+VL++I++DQFSVLY+DVFLFKRSA ATPSTFSTTVFPDGSLRYRY+RIGD+ADWT GVSGNSFVSPTIRNRHVRQ++FIQ DE+GLP  +A                   +P AP S+A N++D+           SGD +S                                   DA TEVTLCRAPTLACL RACGKAGSEV VLWEG  CRAAA++NV+F+CRIGGLEVPAV L G ++           W   AGG  EEAWGP W G    GGLVCEVPRLEWAE GQE AVMVPVEV+W    QAS  A+ QV  GAA VAV GLSV+GDAG++NSHVL FRY+R+DA+AP+CGCS  PRQ +L CDSCLVCGGD STKDCGGFCHGEA VSPCG+C+GGMTGV G L+CDEYREYLDGPA+AALLSLSQSIMMLVALSIMTAFL  CLFLARALMLRGVLA+EGDRHGTLRRRVFSRHRGLSP EL+CLET EYS      S+  G+D+IS  +  G GD   +EL GE     +S S  G+  +R G E  G
Sbjct:   18 QIVDRADPVEQAEFVAEVRAQNKLSSVTFADDYPVEFHN-WREFPVYGTKYEDVYISPNGALFVPPLQTVVPGGLSAVSPSTEAYFPVLKADWNPSDSRAASSVLVVIEEDQFSVLYQDVFLFKRSASATPSTFSTTVFPDGSLRYRYMRIGDKADWTAGVSGNSFVSPTIRNRHVRQSQFIQMDENGLPSAAAPPEAFSATPTLPP------SPGAPVSTASNSSDS----------TSGDDSSEVQQWGEGEAVTIIANGDGAEEE------------DADTEVTLCRAPTLACLARACGKAGSEVPVLWEGVGCRAAASLNVTFSCRIGGLEVPAVGLGGETTTSSSGS-----W---AGGFEEEAWGPYWAGGEVGGGLVCEVPRLEWAEAGQEEAVMVPVEVLWSLPEQASDRAKEQVRLGAAGVAVHGLSVLGDAGLINSHVLAFRYYRDDADAPDCGCSTSPRQTELTCDSCLVCGGDGSTKDCGGFCHGEASVSPCGECSGGMTGVTGGLWCDEYREYLDGPAEAALLSLSQSIMMLVALSIMTAFLTMCLFLARALMLRGVLAMEGDRHGTLRRRVFSRHRGLSPSELDCLETVEYSTAVSIVSKDKGNDDISCMD--GGGDSSGVELIGEKVDPSNSRSSSGSEEKRGGVESAG 642          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig80.15857.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FI05_ECTSI6.160e-30468.84RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5LLL6_9PHAE1.180e-26965.51RING-type domain-containing protein n=1 Tax=Ectoca... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 599..619
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 620..714
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..598
NoneNo IPR availableTMHMMTMhelixcoord: 602..624

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig80contigC-linearis_contig80:266272..273445 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig80.15857.1mRNA_C-linearis_contig80.15857.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig80 266271..273445 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig80.15857.1 ID=prot_C-linearis_contig80.15857.1|Name=mRNA_C-linearis_contig80.15857.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=714bp
EGEGVEYAPRACESMEDCDDGDACSFDACVEGKCVHTGVQEGYGCQAQPA
GATWRADAYRYFQVVGRGDPAEQAEFVAEVQAQNRLSSVTFADDYPVERH
TGWGEFPVYGTKYEDIFISPNGALLLQTVTTGGLSAVSPSTEAFFPVLKA
DWNPSDRRAASAVLLMIDDDQFSVLYEDVFLFKRSALATPSTFSTTVFPD
GSLRYRYIRIGDRADWTVGVSGNSFVSPTIRNRHVRQAEFIQTDEDGLPV
TSAAAAAAAAAASQVIPGGGTSTPSAPSSALNATDADGGSPDGPEDISGD
ATSTTTSTTTASNGDDNDDDDQKEDDDGGGGGGGGSGGDAGTEVTLCRAP
TLACLGRACGKAGSEVFVLWEGFACRAAAAMNVSFACRIGGLEVPAVSLD
GSSSSSSAGAGLDLDWTGVAGGDREEAWGPDWIGAGSGGLVCEVPRLEWA
EEGQEPAVMVPVEVVWFSTGQASASAQRQVSQGAADVAVRGLSVMGDAGV
VNSHVLTFRYFREDAEAPNCGCSPVPRQADLACDSCLVCGGDDSTKDCGG
FCHGEAYVSPCGKCAGGMTGVEGDLYCDEYREYLDGPAQAALLSLSQSIM
MLVALSIMTAFLMTCLFLARALMLRGVLAVEGDRHGTLRRRVFSRHRGLS
PWELECLETFEYSAVGLAPSEANGDDEISYTEVVGAGDIELRGEHSSVSV
RGAGSERVGDEVNG
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