prot_C-linearis_contig80.15856.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig80.15856.1
Unique Nameprot_C-linearis_contig80.15856.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length281
Homology
BLAST of mRNA_C-linearis_contig80.15856.1 vs. uniprot
Match: D7FI05_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI05_ECTSI)

HSP 1 Score: 132 bits (333), Expect = 3.560e-31
Identity = 109/155 (70.32%), Postives = 120/155 (77.42%), Query Frame = 0
Query:   21 AGCSDCAICLGGFEEADVLRKLPCRHFFHQECVDEWLHLSVSCPLCKRSAREGLRRHRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSAVSWARGLPSSLSRVFARDANGGGGGVRVGR--GRRQWQQL-----GSADPLDGDDGDV 168
            A  +DCAICLGGFEE DVLRKLPC HFFHQ+CVDEWLHLSVSCPLCKRSAREGLRR+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX+   +W RGLPSSL+R+FA   +G           GRRQWQ++        + LD D GD 
Sbjct: 1175 ASSADCAICLGGFEEGDVLRKLPCLHFFHQKCVDEWLHLSVSCPLCKRSAREGLRRNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTPVGAWFRGLPSSLARLFAHSGDGXXXXXXXXXXXGRRQWQRVDDDGSNGEEKLDDDRGDT 1329          
BLAST of mRNA_C-linearis_contig80.15856.1 vs. uniprot
Match: A0A6H5LLL6_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LLL6_9PHAE)

HSP 1 Score: 119 bits (298), Expect = 1.430e-26
Identity = 118/233 (50.64%), Postives = 136/233 (58.37%), Query Frame = 0
Query:   21 AGCSDCAICLGGFEEADVLRKLPCRHFFHQECVDEWLHLSVSCPLCKRSAREGLRRHRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSAVS----WARGLPSSLSRVFARDANGGGGGVRVGRGRRQWQQLG-----SADPLDGDDGDVDXXXXXDALEELDDXXXXXXXXXXXXXXXXXXXXXXXXXRVRVADAQLAAFFGVAEPTPRVVAPASLGGGAGGNNI 244
            A  +DC+ICLGGFE+ DVLRKLPC H FHQ+CVDEWLHLSVSCPLCKRSAREGLRR+ XXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXX  +   +    W RGLP SL+R+FA   +G                         +  D D GD       D    LD                          R+RV +A +AAFFG AEP+P V +P SLG  + G +I
Sbjct:  659 ASSADCSICLGGFEDGDVLRKLPCLHLFHQKCVDEWLHLSVSCPLCKRSAREGLRRNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPXXXXXAPTRTPTPVGAWFRGLPPSLARLFAHSGDGXXXXXXXXXXXXXXXXXXXXXXXGEEKFDDDRGDT----GNDDGSPLD----------------------GETRRMRVLNANIAAFFGGAEPSPHV-SPESLGSSSPGGSI 864          
BLAST of mRNA_C-linearis_contig80.15856.1 vs. uniprot
Match: UPI0008A0F666 (RING-H2 finger protein ATL70-like n=1 Tax=Eucalyptus grandis TaxID=71139 RepID=UPI0008A0F666)

HSP 1 Score: 80.9 bits (198), Expect = 8.250e-15
Identity = 33/56 (58.93%), Postives = 41/56 (73.21%), Query Frame = 0
Query:   20 EAGCSDCAICLGGFEEADVLRKLP-CRHFFHQECVDEWLHLSVSCPLCKRSAREGL 74
            E G   C+ICLG +EE+DVLR LP CRHFFH EC+D WL L  +CP+C++S  E L
Sbjct:   73 EIGGGSCSICLGEYEESDVLRPLPECRHFFHMECIDPWLRLHATCPICRKSPEEQL 128          
BLAST of mRNA_C-linearis_contig80.15856.1 vs. uniprot
Match: A0A5B8MYU6_9CHLO (RING-type E3 ubiquitin transferase n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MYU6_9CHLO)

HSP 1 Score: 79.0 bits (193), Expect = 2.160e-13
Identity = 32/69 (46.38%), Postives = 45/69 (65.22%), Query Frame = 0
Query:   11 ASGSGXXXXEAGC----SDCAICLGGFEEADVLRKLPCRHFFHQECVDEWLHLSVSCPLCKRSAREGLR 75
            A+G G    ++G     +DC++C+  FEE D +R+LPC H FH ECVDEWL L  SCP+C+   R+ L+
Sbjct:   94 AAGEGVPDRDSGAKYQTTDCSVCMEAFEEGDRIRELPCGHMFHLECVDEWLKLHPSCPICREDVRDALK 162          
BLAST of mRNA_C-linearis_contig80.15856.1 vs. uniprot
Match: A0A4P9XK66_9FUNG (RING-type domain-containing protein (Fragment) n=1 Tax=Thamnocephalis sphaerospora TaxID=78915 RepID=A0A4P9XK66_9FUNG)

HSP 1 Score: 74.3 bits (181), Expect = 1.420e-12
Identity = 25/52 (48.08%), Postives = 37/52 (71.15%), Query Frame = 0
Query:   26 CAICLGGFEEADVLRKLPCRHFFHQECVDEWLHLSVSCPLCKRSAREGLRRH 77
            C+ICL  +EE + LR+L C H+FHQ CVD+WLH++  CP+CK++     + H
Sbjct:   91 CSICLADYEEGETLRQLQCHHYFHQSCVDQWLHINAHCPVCKQALLRSNKSH 142          
BLAST of mRNA_C-linearis_contig80.15856.1 vs. uniprot
Match: UPI0005278723 (RING-H2 finger protein ATL70-like n=2 Tax=Eucalyptus grandis TaxID=71139 RepID=UPI0005278723)

HSP 1 Score: 74.3 bits (181), Expect = 1.480e-12
Identity = 30/49 (61.22%), Postives = 37/49 (75.51%), Query Frame = 0
Query:   22 GCSDCAICLGGFEEADVLRKLP-CRHFFHQECVDEWLHLSVSCPLCKRS 69
            G   C+ICLG +EE+DVLR LP C HFFH ECVD WL L  +CP+C++S
Sbjct:   98 GSCSCSICLGEYEESDVLRLLPECGHFFHMECVDPWLRLHATCPVCRKS 146          
BLAST of mRNA_C-linearis_contig80.15856.1 vs. uniprot
Match: A0A2G5BKA4_COERN (RING-type domain-containing protein n=1 Tax=Coemansia reversa (strain ATCC 12441 / NRRL 1564) TaxID=763665 RepID=A0A2G5BKA4_COERN)

HSP 1 Score: 77.0 bits (188), Expect = 1.680e-12
Identity = 29/52 (55.77%), Postives = 36/52 (69.23%), Query Frame = 0
Query:   26 CAICLGGFEEADVLRKLPCRHFFHQECVDEWLHLSVSCPLCKRSAREGLRRH 77
            CAICL  +++ D+LR LPC H  HQ+CVDEWLH++ SCPLCKR        H
Sbjct:  257 CAICLCEYDDGDILRLLPCNHHLHQKCVDEWLHINQSCPLCKRVVTSDSEHH 308          
BLAST of mRNA_C-linearis_contig80.15856.1 vs. uniprot
Match: A0A162AYV9_DAUCS (RING-type domain-containing protein n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=A0A162AYV9_DAUCS)

HSP 1 Score: 74.7 bits (182), Expect = 1.800e-12
Identity = 31/49 (63.27%), Postives = 39/49 (79.59%), Query Frame = 0
Query:   22 GCSDCAICLGGFEEADVLRKLP-CRHFFHQECVDEWLHLSVSCPLCKRS 69
            G S CAICLG +++A++LR LP CRHFFH  CVDEWL L+ SCP+C+ S
Sbjct:  125 GDSVCAICLGEYKDAEMLRMLPDCRHFFHLTCVDEWLRLNASCPVCRNS 173          
BLAST of mRNA_C-linearis_contig80.15856.1 vs. uniprot
Match: A0A699K2M5_TANCI (E3 ubiquitin-protein ligase At1g63170-like (Fragment) n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699K2M5_TANCI)

HSP 1 Score: 70.9 bits (172), Expect = 1.920e-12
Identity = 26/49 (53.06%), Postives = 34/49 (69.39%), Query Frame = 0
Query:   26 CAICLGGFEEADVLRKLPCRHFFHQECVDEWLHLSVSCPLCKRSAREGL 74
            C ICL  +   D LR+LPC HFFH++CVD+WL ++ SCPLCK    E +
Sbjct:    2 CCICLAKYANNDELRELPCTHFFHKDCVDKWLKINASCPLCKSEVGESV 50          
BLAST of mRNA_C-linearis_contig80.15856.1 vs. uniprot
Match: A0A261Y600_9FUNG (RING-type domain-containing protein n=1 Tax=Bifiguratus adelaidae TaxID=1938954 RepID=A0A261Y600_9FUNG)

HSP 1 Score: 76.6 bits (187), Expect = 2.280e-12
Identity = 29/45 (64.44%), Postives = 37/45 (82.22%), Query Frame = 0
Query:   26 CAICLGGFEEADVLRKLPCRHFFHQECVDEWLHLSVSCPLCKRSA 70
            CAIC+  +E+ D+LR LPCRH FHQ CVDEW+ L+ +CPLCK+SA
Sbjct:  294 CAICICDYEQGDLLRLLPCRHHFHQSCVDEWMSLNRACPLCKQSA 338          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig80.15856.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FI05_ECTSI3.560e-3170.32RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5LLL6_9PHAE1.430e-2650.64RING-type domain-containing protein n=1 Tax=Ectoca... [more]
UPI0008A0F6668.250e-1558.93RING-H2 finger protein ATL70-like n=1 Tax=Eucalypt... [more]
A0A5B8MYU6_9CHLO2.160e-1346.38RING-type E3 ubiquitin transferase n=1 Tax=Chlorop... [more]
A0A4P9XK66_9FUNG1.420e-1248.08RING-type domain-containing protein (Fragment) n=1... [more]
UPI00052787231.480e-1261.22RING-H2 finger protein ATL70-like n=2 Tax=Eucalypt... [more]
A0A2G5BKA4_COERN1.680e-1255.77RING-type domain-containing protein n=1 Tax=Coeman... [more]
A0A162AYV9_DAUCS1.800e-1263.27RING-type domain-containing protein n=1 Tax=Daucus... [more]
A0A699K2M5_TANCI1.920e-1253.06E3 ubiquitin-protein ligase At1g63170-like (Fragme... [more]
A0A261Y600_9FUNG2.280e-1264.44RING-type domain-containing protein n=1 Tax=Bifigu... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 74..94
NoneNo IPR availablePANTHERPTHR46539FAMILY NOT NAMEDcoord: 23..77
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 25..71
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 26..66
e-value: 4.2E-7
score: 39.6
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 25..67
e-value: 4.3E-13
score: 49.4
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 26..67
score: 12.593
IPR011016Zinc finger, RING-CH-typeSMARTSM00744ringv_2coord: 25..67
e-value: 9.2E-4
score: 16.1
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 14..75
e-value: 4.2E-18
score: 66.3

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig80contigC-linearis_contig80:264827..266259 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig80.15856.1mRNA_C-linearis_contig80.15856.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig80 264827..266259 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig80.15856.1 ID=prot_C-linearis_contig80.15856.1|Name=mRNA_C-linearis_contig80.15856.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=281bp
VGVGSRADDEASGSGGGGGEAGCSDCAICLGGFEEADVLRKLPCRHFFHQ
ECVDEWLHLSVSCPLCKRSAREGLRRHRRRRRRARAVAQRASRDSVSASA
VPAPAPATTSTASTSSAVSWARGLPSSLSRVFARDANGGGGGVRVGRGRR
QWQQLGSADPLDGDDGDVDGDVDGDALEELDDDGSSSPPLDGEEEEDGSG
GGGGRRRRVRVADAQLAAFFGVAEPTPRVVAPASLGGGAGGNNIVGTALE
ALFGGRGRGRAGGVPREGERRGGRAAVARTE
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR011016Znf_RING-CH
IPR013083Znf_RING/FYVE/PHD