mRNA_C-linearis_contig80.15856.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig80.15856.1
Unique NamemRNA_C-linearis_contig80.15856.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig80.15856.1 vs. uniprot
Match: D7FI05_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI05_ECTSI)

HSP 1 Score: 132 bits (333), Expect = 3.560e-31
Identity = 109/155 (70.32%), Postives = 120/155 (77.42%), Query Frame = 1 
Query:   61 AGCSDCAICLGGFEEADVLRKLPCRHFFHQECVDEWLHLSVSCPLCKRSAREGLRRHRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSAVSWARGLPSSLSRVFARDANGGGGGVRVGR--GRRQWQQL-----GSADPLDGDDGDV 504
            A  +DCAICLGGFEE DVLRKLPC HFFHQ+CVDEWLHLSVSCPLCKRSAREGLRR+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX+   +W RGLPSSL+R+FA   +G           GRRQWQ++        + LD D GD 
Sbjct: 1175 ASSADCAICLGGFEEGDVLRKLPCLHFFHQKCVDEWLHLSVSCPLCKRSAREGLRRNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTPVGAWFRGLPSSLARLFAHSGDGXXXXXXXXXXXGRRQWQRVDDDGSNGEEKLDDDRGDT 1329
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BLAST of mRNA_C-linearis_contig80.15856.1 vs. uniprot
Match: A0A6H5LLL6_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LLL6_9PHAE)

HSP 1 Score: 119 bits (298), Expect = 1.430e-26
Identity = 118/233 (50.64%), Postives = 136/233 (58.37%), Query Frame = 1 
Query:   61 AGCSDCAICLGGFEEADVLRKLPCRHFFHQECVDEWLHLSVSCPLCKRSAREGLRRHRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSAVS----WARGLPSSLSRVFARDANGGGGGVRVGRGRRQWQQLG-----SADPLDGDDGDVDXXXXXDALEELDDXXXXXXXXXXXXXXXXXXXXXXXXXRVRVADAQLAAFFGVAEPTPRVVAPASLGGGAGGNNI 732
            A  +DC+ICLGGFE+ DVLRKLPC H FHQ+CVDEWLHLSVSCPLCKRSAREGLRR+ XXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXX  +   +    W RGLP SL+R+FA   +G                         +  D D GD       D    LD                          R+RV +A +AAFFG AEP+P V +P SLG  + G +I
Sbjct:  659 ASSADCSICLGGFEDGDVLRKLPCLHLFHQKCVDEWLHLSVSCPLCKRSAREGLRRNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPXXXXXAPTRTPTPVGAWFRGLPPSLARLFAHSGDGXXXXXXXXXXXXXXXXXXXXXXXGEEKFDDDRGDT----GNDDGSPLD----------------------GETRRMRVLNANIAAFFGGAEPSPHV-SPESLGSSSPGGSI 864
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BLAST of mRNA_C-linearis_contig80.15856.1 vs. uniprot
Match: UPI0008A0F666 (RING-H2 finger protein ATL70-like n=1 Tax=Eucalyptus grandis TaxID=71139 RepID=UPI0008A0F666)

HSP 1 Score: 80.9 bits (198), Expect = 8.250e-15
Identity = 33/56 (58.93%), Postives = 41/56 (73.21%), Query Frame = 1 
Query:   58 EAGCSDCAICLGGFEEADVLRKLP-CRHFFHQECVDEWLHLSVSCPLCKRSAREGL 222
            E G   C+ICLG +EE+DVLR LP CRHFFH EC+D WL L  +CP+C++S  E L
Sbjct:   73 EIGGGSCSICLGEYEESDVLRPLPECRHFFHMECIDPWLRLHATCPICRKSPEEQL 128
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BLAST of mRNA_C-linearis_contig80.15856.1 vs. uniprot
Match: A0A5B8MYU6_9CHLO (RING-type E3 ubiquitin transferase n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MYU6_9CHLO)

HSP 1 Score: 79.0 bits (193), Expect = 2.160e-13
Identity = 32/69 (46.38%), Postives = 45/69 (65.22%), Query Frame = 1 
Query:   31 ASGSGXXXXEAGC----SDCAICLGGFEEADVLRKLPCRHFFHQECVDEWLHLSVSCPLCKRSAREGLR 225
            A+G G    ++G     +DC++C+  FEE D +R+LPC H FH ECVDEWL L  SCP+C+   R+ L+
Sbjct:   94 AAGEGVPDRDSGAKYQTTDCSVCMEAFEEGDRIRELPCGHMFHLECVDEWLKLHPSCPICREDVRDALK 162
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BLAST of mRNA_C-linearis_contig80.15856.1 vs. uniprot
Match: A0A4P9XK66_9FUNG (RING-type domain-containing protein (Fragment) n=1 Tax=Thamnocephalis sphaerospora TaxID=78915 RepID=A0A4P9XK66_9FUNG)

HSP 1 Score: 74.3 bits (181), Expect = 1.420e-12
Identity = 25/52 (48.08%), Postives = 37/52 (71.15%), Query Frame = 1 
Query:   76 CAICLGGFEEADVLRKLPCRHFFHQECVDEWLHLSVSCPLCKRSAREGLRRH 231
            C+ICL  +EE + LR+L C H+FHQ CVD+WLH++  CP+CK++     + H
Sbjct:   91 CSICLADYEEGETLRQLQCHHYFHQSCVDQWLHINAHCPVCKQALLRSNKSH 142
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BLAST of mRNA_C-linearis_contig80.15856.1 vs. uniprot
Match: UPI0005278723 (RING-H2 finger protein ATL70-like n=2 Tax=Eucalyptus grandis TaxID=71139 RepID=UPI0005278723)

HSP 1 Score: 74.3 bits (181), Expect = 1.480e-12
Identity = 30/49 (61.22%), Postives = 37/49 (75.51%), Query Frame = 1 
Query:   64 GCSDCAICLGGFEEADVLRKLP-CRHFFHQECVDEWLHLSVSCPLCKRS 207
            G   C+ICLG +EE+DVLR LP C HFFH ECVD WL L  +CP+C++S
Sbjct:   98 GSCSCSICLGEYEESDVLRLLPECGHFFHMECVDPWLRLHATCPVCRKS 146
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BLAST of mRNA_C-linearis_contig80.15856.1 vs. uniprot
Match: A0A2G5BKA4_COERN (RING-type domain-containing protein n=1 Tax=Coemansia reversa (strain ATCC 12441 / NRRL 1564) TaxID=763665 RepID=A0A2G5BKA4_COERN)

HSP 1 Score: 77.0 bits (188), Expect = 1.680e-12
Identity = 29/52 (55.77%), Postives = 36/52 (69.23%), Query Frame = 1 
Query:   76 CAICLGGFEEADVLRKLPCRHFFHQECVDEWLHLSVSCPLCKRSAREGLRRH 231
            CAICL  +++ D+LR LPC H  HQ+CVDEWLH++ SCPLCKR        H
Sbjct:  257 CAICLCEYDDGDILRLLPCNHHLHQKCVDEWLHINQSCPLCKRVVTSDSEHH 308
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BLAST of mRNA_C-linearis_contig80.15856.1 vs. uniprot
Match: A0A162AYV9_DAUCS (RING-type domain-containing protein n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=A0A162AYV9_DAUCS)

HSP 1 Score: 74.7 bits (182), Expect = 1.800e-12
Identity = 31/49 (63.27%), Postives = 39/49 (79.59%), Query Frame = 1 
Query:   64 GCSDCAICLGGFEEADVLRKLP-CRHFFHQECVDEWLHLSVSCPLCKRS 207
            G S CAICLG +++A++LR LP CRHFFH  CVDEWL L+ SCP+C+ S
Sbjct:  125 GDSVCAICLGEYKDAEMLRMLPDCRHFFHLTCVDEWLRLNASCPVCRNS 173
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BLAST of mRNA_C-linearis_contig80.15856.1 vs. uniprot
Match: A0A699K2M5_TANCI (E3 ubiquitin-protein ligase At1g63170-like (Fragment) n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699K2M5_TANCI)

HSP 1 Score: 70.9 bits (172), Expect = 1.920e-12
Identity = 26/49 (53.06%), Postives = 34/49 (69.39%), Query Frame = 1 
Query:   76 CAICLGGFEEADVLRKLPCRHFFHQECVDEWLHLSVSCPLCKRSAREGL 222
            C ICL  +   D LR+LPC HFFH++CVD+WL ++ SCPLCK    E +
Sbjct:    2 CCICLAKYANNDELRELPCTHFFHKDCVDKWLKINASCPLCKSEVGESV 50
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BLAST of mRNA_C-linearis_contig80.15856.1 vs. uniprot
Match: A0A261Y600_9FUNG (RING-type domain-containing protein n=1 Tax=Bifiguratus adelaidae TaxID=1938954 RepID=A0A261Y600_9FUNG)

HSP 1 Score: 76.6 bits (187), Expect = 2.280e-12
Identity = 29/45 (64.44%), Postives = 37/45 (82.22%), Query Frame = 1 
Query:   76 CAICLGGFEEADVLRKLPCRHFFHQECVDEWLHLSVSCPLCKRSA 210
            CAIC+  +E+ D+LR LPCRH FHQ CVDEW+ L+ +CPLCK+SA
Sbjct:  294 CAICICDYEQGDLLRLLPCRHHFHQSCVDEWMSLNRACPLCKQSA 338
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig80.15856.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FI05_ECTSI3.560e-3170.32RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5LLL6_9PHAE1.430e-2650.64RING-type domain-containing protein n=1 Tax=Ectoca... [more]
UPI0008A0F6668.250e-1558.93RING-H2 finger protein ATL70-like n=1 Tax=Eucalypt... [more]
A0A5B8MYU6_9CHLO2.160e-1346.38RING-type E3 ubiquitin transferase n=1 Tax=Chlorop... [more]
A0A4P9XK66_9FUNG1.420e-1248.08RING-type domain-containing protein (Fragment) n=1... [more]
UPI00052787231.480e-1261.22RING-H2 finger protein ATL70-like n=2 Tax=Eucalypt... [more]
A0A2G5BKA4_COERN1.680e-1255.77RING-type domain-containing protein n=1 Tax=Coeman... [more]
A0A162AYV9_DAUCS1.800e-1263.27RING-type domain-containing protein n=1 Tax=Daucus... [more]
A0A699K2M5_TANCI1.920e-1253.06E3 ubiquitin-protein ligase At1g63170-like (Fragme... [more]
A0A261Y600_9FUNG2.280e-1264.44RING-type domain-containing protein n=1 Tax=Bifigu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig80contigC-linearis_contig80:264827..266259 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score133.3
Seed ortholog evalue1.8e-28
Seed eggNOG ortholog2880.D7FI05
KEGG koko:K19037
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ubiquitin-protein transferase activity
EggNOG OGsKOG0800@1,KOG0800@2759
EC2.3.2.27
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04121
Exons2
Model size844
Cds size843
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930584.103268-CDS-C-linearis_contig80:264826..2655381622930584.103268-CDS-C-linearis_contig80:264826..265538Chordaria linearis ClinC8C monoicousCDSC-linearis_contig80 264827..265538 -
1690881145.557084-CDS-C-linearis_contig80:264826..2655381690881145.557084-CDS-C-linearis_contig80:264826..265538Chordaria linearis ClinC8C monoicousCDSC-linearis_contig80 264827..265538 -
1622930584.1208208-CDS-C-linearis_contig80:266128..2662591622930584.1208208-CDS-C-linearis_contig80:266128..266259Chordaria linearis ClinC8C monoicousCDSC-linearis_contig80 266129..266259 -
1690881145.5696084-CDS-C-linearis_contig80:266128..2662591690881145.5696084-CDS-C-linearis_contig80:266128..266259Chordaria linearis ClinC8C monoicousCDSC-linearis_contig80 266129..266259 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig80.15856.1prot_C-linearis_contig80.15856.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig80 264827..266259 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig80.15856.1

>prot_C-linearis_contig80.15856.1 ID=prot_C-linearis_contig80.15856.1|Name=mRNA_C-linearis_contig80.15856.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=281bp
VGVGSRADDEASGSGGGGGEAGCSDCAICLGGFEEADVLRKLPCRHFFHQ
ECVDEWLHLSVSCPLCKRSAREGLRRHRRRRRRARAVAQRASRDSVSASA
VPAPAPATTSTASTSSAVSWARGLPSSLSRVFARDANGGGGGVRVGRGRR
QWQQLGSADPLDGDDGDVDGDVDGDALEELDDDGSSSPPLDGEEEEDGSG
GGGGRRRRVRVADAQLAAFFGVAEPTPRVVAPASLGGGAGGNNIVGTALE
ALFGGRGRGRAGGVPREGERRGGRAAVARTE
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mRNA from alignment at C-linearis_contig80:264827..266259-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig80.15856.1 ID=mRNA_C-linearis_contig80.15856.1|Name=mRNA_C-linearis_contig80.15856.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1433bp|location=Sequence derived from alignment at C-linearis_contig80:264827..266259- (Chordaria linearis ClinC8C monoicous)
GTGGGGGTGGGGTCGCGCGCGGATGACGAAGCTTCGGGCTCCGGGGGCGG
CGGCGGAGAGGCGGGCTGTTCGGATTGCGCGATCTGCCTGGGCGGGTTCG
AGGAGGCTGATGTGCTGAGGAAGCTTCCTTGGTGAGTGAGGTTCGGGAGG
GGGGGGCGCAAGGGACGCTACGGAGAATGTGGGGGCGACGAGAAATCCCG
ACCTATCATACGATACCTTGTTGTGTGGAAGCCGTTTGTTCCCGACTTGG
GGGGTCCGGAACAAGAAACTGGGTTGGGTGCATGGTGCGGTTAGTTGGGT
ACGCGAAGTTTTGGGCGTGCAGCTTTTTGTTTTGTTCCAGGAGAAGTCGA
GATCGAAGCGCAATCGCGAATGAAATGATGGGATGATATTATGACAGTCT
AGAAGCTGAGCGTTCATGTCGGAATCCAAGTTGGCCGTCCTCGTGTCCCG
CTGAGTGGGTGATCCATCCAGACGAGTTGAGACATAAATAAACATCGGCC
ACCCGGTGGTATTCACCACTTCATATTGTTTGTGCCCCAAACCACTTACT
CTCCAAACGTGGGCACCAACACTGACCGCCCTCGCTCCCCTCTCCCTCTG
TTGCGCTCCCCCCCGCCCCCCCCCCCCCCCCCGCCCCCGCCCCCGCCCCC
CCCCCCGCCCCCGTCCCCGTCCCCGCAATATCGTTTTTTCTCCCTTCCCG
CCCTCCTCGCCTCGCCCCCAGCCGCCACTTCTTCCACCAAGAGTGCGTCG
ACGAGTGGCTACACTTGTCCGTATCGTGCCCGCTCTGCAAGCGCAGCGCC
CGGGAAGGCTTGCGCCGGCATCGCAGGAGGCGTCGCCGAGCTCGAGCGGT
CGCGCAGAGAGCCTCGCGAGACAGCGTCAGCGCCAGCGCGGTGCCAGCGC
CAGCGCCGGCGACAACAAGCACCGCCAGCACCTCCTCCGCCGTCAGTTGG
GCCCGAGGGCTACCGTCTTCCCTCTCTCGAGTGTTCGCCCGCGATGCAAA
CGGCGGGGGGGGCGGTGTCCGTGTCGGCCGGGGGCGGCGGCAGTGGCAAC
AGCTCGGCAGCGCAGACCCCCTCGACGGTGACGACGGTGATGTTGATGGT
GACGTTGATGGCGATGCCTTGGAAGAGCTTGACGACGACGGGTCCTCTTC
CCCTCCGCTGGACGGAGAAGAAGAAGAAGACGGCAGCGGCGGCGGCGGCG
GAAGGAGGAGGAGGGTGAGAGTCGCCGACGCGCAGCTGGCGGCCTTTTTC
GGAGTGGCCGAGCCGACGCCGCGTGTTGTTGCCCCGGCCAGCCTGGGCGG
CGGCGCGGGCGGCAACAACATCGTAGGCACGGCGCTAGAGGCGTTGTTTG
GCGGCCGCGGTCGCGGTCGGGCTGGCGGGGTGCCCAGGGAGGGGGAAAGG
AGAGGCGGGAGGGCTGCTGTCGCCCGTACGGAG
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Coding sequence (CDS) from alignment at C-linearis_contig80:264827..266259-

>mRNA_C-linearis_contig80.15856.1 ID=mRNA_C-linearis_contig80.15856.1|Name=mRNA_C-linearis_contig80.15856.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1686bp|location=Sequence derived from alignment at C-linearis_contig80:264827..266259- (Chordaria linearis ClinC8C monoicous)
GTGGGGGTGGGGTCGCGCGCGGATGACGAAGCTTCGGGCTCCGGGGGCGG
CGGCGGAGAGGCGGGCTGTTCGGATTGCGCGATCTGCCTGGGCGGGTTCG
AGGAGGCTGATGTGCTGAGGAAGCTTCCTTGGTGGGGGTGGGGTCGCGCG
CGGATGACGAAGCTTCGGGCTCCGGGGGCGGCGGCGGAGAGGCGGGCTGT
TCGGATTGCGCGATCTGCCTGGGCGGGTTCGAGGAGGCTGATGTGCTGAG
GAAGCTTCCTTGCCGCCACTTCTTCCACCAAGAGTGCGTCGACGAGTGGC
TACACTTGTCCGTATCGTGCCCGCTCTGCAAGCGCAGCGCCCGGGAAGGC
TTGCGCCGGCATCGCAGGAGGCGTCGCCGAGCTCGAGCGGTCGCGCAGAG
AGCCTCGCGAGACAGCGTCAGCGCCAGCGCGGTGCCAGCGCCAGCGCCGG
CGACAACAAGCACCGCCAGCACCTCCTCCGCCGTCAGTTGGGCCCGAGGG
CTACCGTCTTCCCTCTCTCGAGTGTTCGCCCGCGATGCAAACGGCGGGGG
GGGCGGTGTCCGTGTCGGCCGGGGGCGGCGGCAGTGGCAACAGCTCGGCA
GCGCAGACCCCCTCGACGGTGACGACGGTGATGTTGATGGTGACGTTGAT
GGCGATGCCTTGGAAGAGCTTGACGACGACGGGTCCTCTTCCCCTCCGCT
GGACGGAGAAGAAGAAGAAGACGGCAGCGGCGGCGGCGGCGGAAGGAGGA
GGAGGGTGAGAGTCGCCGACGCGCAGCTGGCGGCCTTTTTCGGAGTGGCC
GAGCCGACGCCGCGTGTTGTTGCCCCGGCCAGCCTGGGCGGCGGCGCGGG
CGGCAACAACATCGTAGGCACGGCGCTAGAGGCGTTGTTTGGCGGCCGCG
GTCGCGGTCGGGCTGGCGGGGTGCCCAGGGAGGGGGAAAGGAGAGGCGGG
AGGGCTGCTGTCGCCCGTACGGAGCCGCCACTTCTTCCACCAAGAGTGCG
TCGACGAGTGGCTACACTTGTCCGTATCGTGCCCGCTCTGCAAGCGCAGC
GCCCGGGAAGGCTTGCGCCGGCATCGCAGGAGGCGTCGCCGAGCTCGAGC
GGTCGCGCAGAGAGCCTCGCGAGACAGCGTCAGCGCCAGCGCGGTGCCAG
CGCCAGCGCCGGCGACAACAAGCACCGCCAGCACCTCCTCCGCCGTCAGT
TGGGCCCGAGGGCTACCGTCTTCCCTCTCTCGAGTGTTCGCCCGCGATGC
AAACGGCGGGGGGGGCGGTGTCCGTGTCGGCCGGGGGCGGCGGCAGTGGC
AACAGCTCGGCAGCGCAGACCCCCTCGACGGTGACGACGGTGATGTTGAT
GGTGACGTTGATGGCGATGCCTTGGAAGAGCTTGACGACGACGGGTCCTC
TTCCCCTCCGCTGGACGGAGAAGAAGAAGAAGACGGCAGCGGCGGCGGCG
GCGGAAGGAGGAGGAGGGTGAGAGTCGCCGACGCGCAGCTGGCGGCCTTT
TTCGGAGTGGCCGAGCCGACGCCGCGTGTTGTTGCCCCGGCCAGCCTGGG
CGGCGGCGCGGGCGGCAACAACATCGTAGGCACGGCGCTAGAGGCGTTGT
TTGGCGGCCGCGGTCGCGGTCGGGCTGGCGGGGTGCCCAGGGAGGGGGAA
AGGAGAGGCGGGAGGGCTGCTGTCGCCCGTACGGAG
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