prot_C-linearis_contig80.15853.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig80.15853.1
Unique Nameprot_C-linearis_contig80.15853.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length204
Homology
BLAST of mRNA_C-linearis_contig80.15853.1 vs. uniprot
Match: D7FI02_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI02_ECTSI)

HSP 1 Score: 133 bits (335), Expect = 1.040e-35
Identity = 83/192 (43.23%), Postives = 112/192 (58.33%), Query Frame = 0
Query:    4 EKAKPVLLLLVLACIVNSYLNSDTFKRNDPGFISMRLYEDLVCERRKEEVRDECRVALAKALVPAQLSCLPLFRDLSVCRDPFEG------RGKNGCQKEMQQLSECFQTHLGPYGFSDDDIVRLLFGWQKKKNPKKAKPQLNVSKEGEGGEEIAGQQAEKKSDKGDKKTGEEANVENEAPGAGGKPKVEVD 189
            E+AK V+L LVLA I  SY+ SD F R      ++  +ED +C+ R    RD C+  LA AL PA+LSC+ +F D   CRDP +G      R    CQKE Q++ EC Q HL PYGFSD++I RL++  Q++  P  +KP + VS  G  G+E A  +A +K  +GD   G+ AN   E     G PKVEV+
Sbjct:    4 ERAKLVVLGLVLAVIARSYIMSDVFTRGYMMSSTLGFFEDNLCKGRPPADRDGCKATLATALAPAKLSCMSVFHDFVRCRDPADGGXXXXXRNNLPCQKENQKIFECLQAHLAPYGFSDEEIFRLIYKTQQQPPPP-SKPSVEVSDHGREGDEKA--KANEKPGEGDNAGGKSANRGEETDVEKGGPKVEVE 192          
BLAST of mRNA_C-linearis_contig80.15853.1 vs. uniprot
Match: A0A6H5L454_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L454_9PHAE)

HSP 1 Score: 124 bits (311), Expect = 3.800e-32
Identity = 78/187 (41.71%), Postives = 108/187 (57.75%), Query Frame = 0
Query:    4 EKAKPVLLLLVLACIVNSYLNSDTFKRNDPGFISMRLYEDLVCERRKEEVRDECRVALAKALVPAQLSCLPLFRDLSVCRDPFEGRG---KNGCQKEMQQLSECFQTHLGPYGFSDDDIVRLLFGWQKKKNPKKAKPQLNVSKEGEGGEEIAGQQAEKKSDKGDKKTGEEANVENEAPGAGGKPKVE 187
            E+AK V L LVLA I  SY+ SD F        + R +ED +CE R+   RD+C+  LA  L PA+LSC+  F D  +C+ P EG G   K  CQKE Q+  EC Q HL P+GFSD++I+RLL+  Q++  P+ +KP + VS     G+E A  +  +K  +G+   G+  N  +E     G PKVE
Sbjct:    4 ERAKLVGLGLVLAVIARSYIKSDVFTHGVMMSSTARFFEDNLCEGRQPADRDDCKATLATVLAPAKLSCMSAFHDFVLCQHPAEGGGDGNKRRCQKEQQKRFECLQAHLRPHGFSDEEIIRLLYKTQQQPPPQ-SKPSVEVSDHVREGDEKA--KVNEKPGEGENAGGKGVNRGDETVVEKGGPKVE 187          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig80.15853.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FI02_ECTSI1.040e-3543.23Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L454_9PHAE3.800e-3241.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..25
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 9..19
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 26..203
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 20..25
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..8
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..25
score: 0.635

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig80contigC-linearis_contig80:247019..248590 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig80.15853.1mRNA_C-linearis_contig80.15853.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig80 246962..248788 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig80.15853.1 ID=prot_C-linearis_contig80.15853.1|Name=mRNA_C-linearis_contig80.15853.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=204bp
MLPEKAKPVLLLLVLACIVNSYLNSDTFKRNDPGFISMRLYEDLVCERRK
EEVRDECRVALAKALVPAQLSCLPLFRDLSVCRDPFEGRGKNGCQKEMQQ
LSECFQTHLGPYGFSDDDIVRLLFGWQKKKNPKKAKPQLNVSKEGEGGEE
IAGQQAEKKSDKGDKKTGEEANVENEAPGAGGKPKVEVDQGQGSENGKHY
RGR*
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