mRNA_C-linearis_contig80.15853.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig80.15853.1
Unique NamemRNA_C-linearis_contig80.15853.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig80.15853.1 vs. uniprot
Match: D7FI02_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI02_ECTSI)

HSP 1 Score: 135 bits (339), Expect = 3.300e-35
Identity = 84/195 (43.08%), Postives = 113/195 (57.95%), Query Frame = 1 
Query:   58 MLPEKAKPVLLLLVLACIVNSYLNSDTFKRNDPGFISMRLYEDLVCERRKEEVRDECRVALAKALVPAQLSCLPLFRDLSVCRDPFEG------RGKNGCQKEMQQLSECFQTHLGPYGFSDDDIVRLLFGWQKKKNPKKAKPQLNVSKEGEGGEEIAGQQAEKKSDKGDKKTGEEANVENEAPGAGGKPKVEVD 624
            M  E+AK V+L LVLA I  SY+ SD F R      ++  +ED +C+ R    RD C+  LA AL PA+LSC+ +F D   CRDP +G      R    CQKE Q++ EC Q HL PYGFSD++I RL++  Q++  P  +KP + VS  G  G+E A  +A +K  +GD   G+ AN   E     G PKVEV+
Sbjct:    1 MSGERAKLVVLGLVLAVIARSYIMSDVFTRGYMMSSTLGFFEDNLCKGRPPADRDGCKATLATALAPAKLSCMSVFHDFVRCRDPADGGXXXXXRNNLPCQKENQKIFECLQAHLAPYGFSDEEIFRLIYKTQQQPPPP-SKPSVEVSDHGREGDEKA--KANEKPGEGDNAGGKSANRGEETDVEKGGPKVEVE 192
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BLAST of mRNA_C-linearis_contig80.15853.1 vs. uniprot
Match: A0A6H5L454_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L454_9PHAE)

HSP 1 Score: 125 bits (315), Expect = 1.100e-31
Identity = 79/192 (41.15%), Postives = 110/192 (57.29%), Query Frame = 1 
Query:   58 MLPEKAKPVLLLLVLACIVNSYLNSDTFKRNDPGFISMRLYEDLVCERRKEEVRDECRVALAKALVPAQLSCLPLFRDLSVCRDPFEGRG---KNGCQKEMQQLSECFQTHLGPYGFSDDDIVRLLFGWQKKKNPKKAKPQLNVSKEGEGGEEIAGQQAEKKSDKGDKKTGEEANVENEAPGAGGKPKVEVD 624
            M  E+AK V L LVLA I  SY+ SD F        + R +ED +CE R+   RD+C+  LA  L PA+LSC+  F D  +C+ P EG G   K  CQKE Q+  EC Q HL P+GFSD++I+RLL+  Q++  P+ +KP + VS     G+E A  +  +K  +G+   G+  N  +E     G PKVE +
Sbjct:    1 MSGERAKLVGLGLVLAVIARSYIKSDVFTHGVMMSSTARFFEDNLCEGRQPADRDDCKATLATVLAPAKLSCMSAFHDFVLCQHPAEGGGDGNKRRCQKEQQKRFECLQAHLRPHGFSDEEIIRLLYKTQQQPPPQ-SKPSVEVSDHVREGDEKA--KVNEKPGEGENAGGKGVNRGDETVVEKGGPKVEEE 189
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig80.15853.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FI02_ECTSI3.300e-3543.08Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L454_9PHAE1.100e-3141.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig80contigC-linearis_contig80:246962..248788 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons3
Model size867
Cds size612
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig80.15853.1prot_C-linearis_contig80.15853.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig80 247019..248590 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930583.6416278-UTR-C-linearis_contig80:246961..2470181622930583.6416278-UTR-C-linearis_contig80:246961..247018Chordaria linearis ClinC8C monoicousUTRC-linearis_contig80 246962..247018 +
1690881145.2827811-UTR-C-linearis_contig80:246961..2470181690881145.2827811-UTR-C-linearis_contig80:246961..247018Chordaria linearis ClinC8C monoicousUTRC-linearis_contig80 246962..247018 +
1622930583.7188504-UTR-C-linearis_contig80:248590..2487881622930583.7188504-UTR-C-linearis_contig80:248590..248788Chordaria linearis ClinC8C monoicousUTRC-linearis_contig80 248591..248788 +
1690881145.335344-UTR-C-linearis_contig80:248590..2487881690881145.335344-UTR-C-linearis_contig80:248590..248788Chordaria linearis ClinC8C monoicousUTRC-linearis_contig80 248591..248788 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930583.661547-CDS-C-linearis_contig80:247018..2471191622930583.661547-CDS-C-linearis_contig80:247018..247119Chordaria linearis ClinC8C monoicousCDSC-linearis_contig80 247019..247119 +
1690881145.2934372-CDS-C-linearis_contig80:247018..2471191690881145.2934372-CDS-C-linearis_contig80:247018..247119Chordaria linearis ClinC8C monoicousCDSC-linearis_contig80 247019..247119 +
1622930583.6846538-CDS-C-linearis_contig80:247829..2480461622930583.6846538-CDS-C-linearis_contig80:247829..248046Chordaria linearis ClinC8C monoicousCDSC-linearis_contig80 247830..248046 +
1690881145.3066902-CDS-C-linearis_contig80:247829..2480461690881145.3066902-CDS-C-linearis_contig80:247829..248046Chordaria linearis ClinC8C monoicousCDSC-linearis_contig80 247830..248046 +
1622930583.7016017-CDS-C-linearis_contig80:248296..2485901622930583.7016017-CDS-C-linearis_contig80:248296..248590Chordaria linearis ClinC8C monoicousCDSC-linearis_contig80 248297..248590 +
1690881145.3191352-CDS-C-linearis_contig80:248296..2485901690881145.3191352-CDS-C-linearis_contig80:248296..248590Chordaria linearis ClinC8C monoicousCDSC-linearis_contig80 248297..248590 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig80.15853.1

>prot_C-linearis_contig80.15853.1 ID=prot_C-linearis_contig80.15853.1|Name=mRNA_C-linearis_contig80.15853.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=204bp
MLPEKAKPVLLLLVLACIVNSYLNSDTFKRNDPGFISMRLYEDLVCERRK
EEVRDECRVALAKALVPAQLSCLPLFRDLSVCRDPFEGRGKNGCQKEMQQ
LSECFQTHLGPYGFSDDDIVRLLFGWQKKKNPKKAKPQLNVSKEGEGGEE
IAGQQAEKKSDKGDKKTGEEANVENEAPGAGGKPKVEVDQGQGSENGKHY
RGR*
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mRNA from alignment at C-linearis_contig80:246962..248788+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig80.15853.1 ID=mRNA_C-linearis_contig80.15853.1|Name=mRNA_C-linearis_contig80.15853.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1827bp|location=Sequence derived from alignment at C-linearis_contig80:246962..248788+ (Chordaria linearis ClinC8C monoicous)
CCCACCGATTCGCCGACTCTTAGCTTCTTCAGCACCCACGGTCCAGAGCA
CAAGGTCATGTTGCCGGAAAAAGCGAAGCCCGTGTTGCTTCTGCTGGTGC
TTGCGTGCATTGTCAACTCATATTTGAACAGCGATACTTTCAAACGCAAC
GACCCTGGGTGAGTGAGGGCTCTTGGCATCTTGGCATCTCATCCCGGCAG
ATCAGATTCGACAGACGCAGCAATCAGTACAGCGAGTTGTGGGCACGGGA
GGTGCACGTGAAGGATATACCGCGCGTCGGGTAGCCTAACAGGGTAACGT
AAAAGTATAGGCGGTGCTGGAAGCTCGGCCTAGACGGCCCGATTACCGAC
ATAGAAGGGACTTCGATGTTGCAGTTGGACACACACATCGCAGGACGATG
ACTCAAGATACCACGGGGGACGTGGTGCTGCTCCCCTATCATCCGATAAC
TGGTGTCACGAGAATATCTGACAGCATGACCACGCACTTCTCTGAGGTTG
CGAACTCGCTTAAAATCTAGCGCCTCTTTTCCATACCGCCACTATACGCC
ACCTACATGCCCACATGTTTCCCCCCTAATCTTCGAGATCCCGCTGCCGC
AGTCGCGTGTGACAGCGGTACGCTTTGGTCGAGCATTTCAAGATACCTTA
GTTTCGTACGCGTGCCATCCACAGAGGGCGTATGTACGTTTGCTCTACCC
GCGGCTTTGTCAACCGTCGCATCAGCAACGTGAAGCACGCTTTCCCCCCT
CATTTACGGTCGGCCCAGGATATCGACCGGTGATCTTCCGTCATCCACGT
AGTTGTTAACGAGCCCAACATTCTCACTCCCCCCCGTCGTCGTCCCATTG
CGTGCCCGAAAATCCCAGCTTCATCTCCATGAGATTGTACGAAGACTTGG
TGTGCGAACGCAGAAAAGAAGAAGTGCGGGATGAGTGCAGAGTTGCCTTG
GCCAAGGCGCTTGTCCCTGCCCAGCTTTCCTGTCTACCTTTATTCCGCGA
TCTGTCCGTGTGCCGCGACCCTTTCGAAGGCAGAGGCAAGAACGGCTGCC
AAAAGGAGATGCAGCAGCTGTCGGAATGCTTCCAGGTGCGCGCATGCGAA
ACTATGCTTTGATGCTTTGGAGATTTTAGCTCAACTCTGGGATGCATTTG
GCGCGATTCTTGTAGACTACTAAAAGGAGTACAGAGGTAGGCCCAAGTTT
GGCGCATGTTCCTACGAAGGATGTACATACATAGCATCACGTGGTTTTGC
ACATGTACTCTGTGTTGGTTTATATGCCGAGATCTACGTCGGCCGCCAAC
ACCGCCCCCCGCCCTCCCCTGGCCCTCAACACCAGACTCACTTGGGACCC
TACGGTTTCAGCGACGACGATATCGTCAGGCTCCTCTTCGGGTGGCAGAA
AAAGAAAAACCCTAAAAAAGCGAAACCCCAGCTGAATGTTTCGAAGGAGG
GCGAGGGTGGCGAAGAAATCGCGGGACAGCAGGCGGAGAAGAAGTCGGAC
AAGGGAGACAAGAAGACGGGGGAGGAAGCAAACGTTGAAAATGAGGCGCC
TGGGGCAGGGGGCAAGCCCAAGGTGGAGGTAGACCAAGGGCAAGGGTCGG
AGAACGGGAAGCACTACAGGGGAAGATAGTGATCGTGACTCTTGTTGCTT
GCTTTCCTTTTCGCTTCAAGCAGTGTGCCCGCGGGGCGCAGGCGACCTAG
TTTGTGTCAACTGCTGTGTAGTCTGATTGTACATAATTATCGGGATGCGC
AAAGTCGTTTGGAACCACATAATAACAGGAAGTTTTGTTGCACGAACATC
TCCCTCATGTCAACGGGAAGCTTGGGT
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Coding sequence (CDS) from alignment at C-linearis_contig80:246962..248788+

>mRNA_C-linearis_contig80.15853.1 ID=mRNA_C-linearis_contig80.15853.1|Name=mRNA_C-linearis_contig80.15853.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1224bp|location=Sequence derived from alignment at C-linearis_contig80:246962..248788+ (Chordaria linearis ClinC8C monoicous)
ATGTTGCCGGAAAAAGCGAAGCCCGTGTTGCTTCTGCTGGTGCTTGCGTG
CATTGTCAACTCATATTTGAACAGCGATACTTTCAAACGCAACGACCCTG
GATGTTGCCGGAAAAAGCGAAGCCCGTGTTGCTTCTGCTGGTGCTTGCGT
GCATTGTCAACTCATATTTGAACAGCGATACTTTCAAACGCAACGACCCT
GGCTTCATCTCCATGAGATTGTACGAAGACTTGGTGTGCGAACGCAGAAA
AGAAGAAGTGCGGGATGAGTGCAGAGTTGCCTTGGCCAAGGCGCTTGTCC
CTGCCCAGCTTTCCTGTCTACCTTTATTCCGCGATCTGTCCGTGTGCCGC
GACCCTTTCGAAGGCAGAGGCAAGAACGGCTGCCAAAAGGAGATGCAGCA
GCTGTCGGAATGCTTCCAGCTTCATCTCCATGAGATTGTACGAAGACTTG
GTGTGCGAACGCAGAAAAGAAGAAGTGCGGGATGAGTGCAGAGTTGCCTT
GGCCAAGGCGCTTGTCCCTGCCCAGCTTTCCTGTCTACCTTTATTCCGCG
ATCTGTCCGTGTGCCGCGACCCTTTCGAAGGCAGAGGCAAGAACGGCTGC
CAAAAGGAGATGCAGCAGCTGTCGGAATGCTTCCAGACTCACTTGGGACC
CTACGGTTTCAGCGACGACGATATCGTCAGGCTCCTCTTCGGGTGGCAGA
AAAAGAAAAACCCTAAAAAAGCGAAACCCCAGCTGAATGTTTCGAAGGAG
GGCGAGGGTGGCGAAGAAATCGCGGGACAGCAGGCGGAGAAGAAGTCGGA
CAAGGGAGACAAGAAGACGGGGGAGGAAGCAAACGTTGAAAATGAGGCGC
CTGGGGCAGGGGGCAAGCCCAAGGTGGAGGTAGACCAAGGGCAAGGGTCG
GAGAACGGGAAGCACTACAGGGGAAGATAGACTCACTTGGGACCCTACGG
TTTCAGCGACGACGATATCGTCAGGCTCCTCTTCGGGTGGCAGAAAAAGA
AAAACCCTAAAAAAGCGAAACCCCAGCTGAATGTTTCGAAGGAGGGCGAG
GGTGGCGAAGAAATCGCGGGACAGCAGGCGGAGAAGAAGTCGGACAAGGG
AGACAAGAAGACGGGGGAGGAAGCAAACGTTGAAAATGAGGCGCCTGGGG
CAGGGGGCAAGCCCAAGGTGGAGGTAGACCAAGGGCAAGGGTCGGAGAAC
GGGAAGCACTACAGGGGAAGATAG
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