prot_C-linearis_contig8.15823.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig8.15823.1
Unique Nameprot_C-linearis_contig8.15823.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length312
Homology
BLAST of mRNA_C-linearis_contig8.15823.1 vs. uniprot
Match: D8LM09_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LM09_ECTSI)

HSP 1 Score: 461 bits (1186), Expect = 1.600e-161
Identity = 255/306 (83.33%), Postives = 271/306 (88.56%), Query Frame = 0
Query:    1 MRSRVVAALFLASAVDSFHVNTLGRPHVIRSSSSRGSGSRDSSTAMRMGASPLPDAESLRKTMVSTAAALLIAFSPAVAPCQQAFAADSAGAQELSPAEMLVQKTTDMQKKRLKDEAQKELQGDIKMQEGDLIARVLVSIKQDLYDLGAPDTSGFPAIDTDDARLIVAAFGKDGPPVAAKRLTVKGRQFPVTVELTVDDLAFPLTKEAWRLDARSKEDIGLAVEIDPDGKAATLDSESLTGYGVSKPLRIGAQLERTEAAVELVVNPQLKERAEQALPNEGIQQLERVDAMLDYKETKAAPTGARG 306
            MRS  VAA FLAS V+SFHV+T+GRPH   SS S  S +  S + + MGA  LP AESLRKT  STAAALLIAFSPAVA  Q AFAAD AGAQELSPAEMLV+KTTDMQ+KRLKDE+QK+LQGD+ MQEGDLIARVLVSIKQDLYDLGAPDT+GFPA+DTDDARLIVAAFGKDGPPVAAKRL VKGRQFPVTVELT DDLAFPLTK+AWRLD+RSKEDIGLAVEIDPDG+AATLDSESLTGYGVSKPLRIGAQLERTEAAVELV NPQLKERAEQALPNEGIQQLERVDAMLDYKE KA   G  G
Sbjct:    1 MRSYAVAAFFLASVVESFHVSTVGRPHEFHSSRSS-SRAGASVSPLLMGAPSLPSAESLRKTAASTAAALLIAFSPAVASYQHAFAADRAGAQELSPAEMLVKKTTDMQRKRLKDESQKQLQGDVTMQEGDLIARVLVSIKQDLYDLGAPDTTGFPAVDTDDARLIVAAFGKDGPPVAAKRLAVKGRQFPVTVELTADDLAFPLTKDAWRLDSRSKEDIGLAVEIDPDGRAATLDSESLTGYGVSKPLRIGAQLERTEAAVELVANPQLKERAEQALPNEGIQQLERVDAMLDYKEAKAPKGGRAG 305          
BLAST of mRNA_C-linearis_contig8.15823.1 vs. uniprot
Match: A0A836CAJ8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAJ8_9STRA)

HSP 1 Score: 216 bits (551), Expect = 4.320e-65
Identity = 125/271 (46.13%), Postives = 177/271 (65.31%), Query Frame = 0
Query:   61 KTMVSTAAALLIAFSPAVA------PCQQAFAADSAG---------------AQELSPAEMLVQKTTDMQKKRLKDEAQKELQGDIKMQEGDLIARVLVSIKQDLYDLGAPDTSGFPAIDTDDARLIVAAFGKDGPPVAAKRLTVKGRQFPVTVELTVDDLAFPLTKEAWRLDARSKEDIGLAVEIDPDGKAATLDSESLTGYGVSKPLRIGAQLERTEAAVELVVNPQLKERAEQALPNEGIQQLERVDAMLDYKETKAAPTGARGLSKA 310
            K   S  AAL++A SP +A        Q+  +++S G                ++++P + L Q+ T  Q  R++ E Q+ L+ D   + G+LIARV+VSIK D + LG PD   FP +DT+DARLIV AFG+ GPPVA++R+ +KG +FP  +ELT DDLAFPLTKE W  DAR++++IG+AV +D DGK ATLD+  LTGYG+SKP+++G Q++RTEA V + VN  L+E+ + ALP+  I  LER+DA+LD KE+ AA   A   + A
Sbjct:   43 KAACSAIAALVVAASPVLAIGDVPPVLQEGGSSESGGIAIVQEQQLAQQQQPVEDINPVQQLAQQATAEQVTRVRAEQQEVLRRDALREPGELIARVVVSIKSDAFPLGFPDVGPFPELDTEDARLIVTAFGRSGPPVASRRVPLKGLKFPALLELTADDLAFPLTKEVWLNDARAQDEIGVAVVLDVDGKLATLDAGDLTGYGISKPIKLGGQVQRTEAIVTVQVNKALEEKGQAALPSMEIAVLERIDALLDLKESIAATAAAAPAAPA 313          
BLAST of mRNA_C-linearis_contig8.15823.1 vs. uniprot
Match: A0A4D9DAT9_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DAT9_9STRA)

HSP 1 Score: 101 bits (252), Expect = 5.040e-21
Identity = 54/144 (37.50%), Postives = 91/144 (63.19%), Query Frame = 0
Query:  131 DLIARVLVSIKQ-DLYDLGAPDTSGFP--AIDTDDARLIVAAFGKDGPPVAAKRLTVKGRQFPVTVELTVDDLAFPLTKEAWRLDARSKEDIGLAVEIDPDGKAATLDSESLTGYGVSKPLRIGAQLERTEAAVELVVNPQLKE 271
            D+IA+  V + + + Y LG P+  G    A++ D+A L++  +G++G PVAAK++ ++G QFP   ELT ++L FPLTKE W  D R+ +D+G++  +D DGK +T +   L G+G+SKP+ I     R +A +++     +K+
Sbjct:  147 DVIAKGTVRLPEIEGYPLG-PERPGVINYALENDNAALLITCYGREGGPVAAKKIQLRGLQFPYNFELTFNNLLFPLTKETWEKDNRAFDDLGISALLDLDGKFSTANENDLLGFGISKPVAIAGSQIRRDALIQVTPRTGVKQ 289          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15823.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LM09_ECTSI1.600e-16183.33Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CAJ8_9STRA4.320e-6546.13Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A4D9DAT9_9STRA5.040e-2137.50Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 18..311
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 5..12
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..17
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 13..17
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..4
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..17
score: 0.522

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig8contigC-linearis_contig8:3717174..3721330 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig8.15823.1mRNA_C-linearis_contig8.15823.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig8 3717174..3721513 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig8.15823.1 ID=prot_C-linearis_contig8.15823.1|Name=mRNA_C-linearis_contig8.15823.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=312bp
MRSRVVAALFLASAVDSFHVNTLGRPHVIRSSSSRGSGSRDSSTAMRMGA
SPLPDAESLRKTMVSTAAALLIAFSPAVAPCQQAFAADSAGAQELSPAEM
LVQKTTDMQKKRLKDEAQKELQGDIKMQEGDLIARVLVSIKQDLYDLGAP
DTSGFPAIDTDDARLIVAAFGKDGPPVAAKRLTVKGRQFPVTVELTVDDL
AFPLTKEAWRLDARSKEDIGLAVEIDPDGKAATLDSESLTGYGVSKPLRI
GAQLERTEAAVELVVNPQLKERAEQALPNEGIQQLERVDAMLDYKETKAA
PTGARGLSKAF*
back to top