mRNA_C-linearis_contig8.15823.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig8.15823.1 vs. uniprot
Match: D8LM09_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LM09_ECTSI) HSP 1 Score: 461 bits (1186), Expect = 1.670e-160 Identity = 255/306 (83.33%), Postives = 271/306 (88.56%), Query Frame = 1
Query: 1 MRSRVVAALFLASAVDSFHVNTLGRPHVIRSSSSRGSGSRDSSTAMRMGASPLPDAESLRKTMVSTAAALLIAFSPAVAPCQQAFAADSAGAQELSPAEMLVQKTTDMQKKRLKDEAQKELQGDIKMQEGDLIARVLVSIKQDLYDLGAPDTSGFPAIDTDDARLIVAAFGKDGPPVAAKRLTVKGRQFPVTVELTVDDLAFPLTKEAWRLDARSKEDIGLAVEIDPDGKAATLDSESLTGYGVSKPLRIGAQLERTEAAVELVVNPQLKERAEQALPNEGIQQLERVDAMLDYKETKAAPTGARG 918
MRS VAA FLAS V+SFHV+T+GRPH SS S S + S + + MGA LP AESLRKT STAAALLIAFSPAVA Q AFAAD AGAQELSPAEMLV+KTTDMQ+KRLKDE+QK+LQGD+ MQEGDLIARVLVSIKQDLYDLGAPDT+GFPA+DTDDARLIVAAFGKDGPPVAAKRL VKGRQFPVTVELT DDLAFPLTK+AWRLD+RSKEDIGLAVEIDPDG+AATLDSESLTGYGVSKPLRIGAQLERTEAAVELV NPQLKERAEQALPNEGIQQLERVDAMLDYKE KA G G
Sbjct: 1 MRSYAVAAFFLASVVESFHVSTVGRPHEFHSSRSS-SRAGASVSPLLMGAPSLPSAESLRKTAASTAAALLIAFSPAVASYQHAFAADRAGAQELSPAEMLVKKTTDMQRKRLKDESQKQLQGDVTMQEGDLIARVLVSIKQDLYDLGAPDTTGFPAVDTDDARLIVAAFGKDGPPVAAKRLAVKGRQFPVTVELTADDLAFPLTKDAWRLDSRSKEDIGLAVEIDPDGRAATLDSESLTGYGVSKPLRIGAQLERTEAAVELVANPQLKERAEQALPNEGIQQLERVDAMLDYKEAKAPKGGRAG 305
BLAST of mRNA_C-linearis_contig8.15823.1 vs. uniprot
Match: A0A836CAJ8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAJ8_9STRA) HSP 1 Score: 216 bits (551), Expect = 2.940e-64 Identity = 125/271 (46.13%), Postives = 177/271 (65.31%), Query Frame = 1
Query: 181 KTMVSTAAALLIAFSPAVA------PCQQAFAADSAG---------------AQELSPAEMLVQKTTDMQKKRLKDEAQKELQGDIKMQEGDLIARVLVSIKQDLYDLGAPDTSGFPAIDTDDARLIVAAFGKDGPPVAAKRLTVKGRQFPVTVELTVDDLAFPLTKEAWRLDARSKEDIGLAVEIDPDGKAATLDSESLTGYGVSKPLRIGAQLERTEAAVELVVNPQLKERAEQALPNEGIQQLERVDAMLDYKETKAAPTGARGLSKA 930
K S AAL++A SP +A Q+ +++S G ++++P + L Q+ T Q R++ E Q+ L+ D + G+LIARV+VSIK D + LG PD FP +DT+DARLIV AFG+ GPPVA++R+ +KG +FP +ELT DDLAFPLTKE W DAR++++IG+AV +D DGK ATLD+ LTGYG+SKP+++G Q++RTEA V + VN L+E+ + ALP+ I LER+DA+LD KE+ AA A + A
Sbjct: 43 KAACSAIAALVVAASPVLAIGDVPPVLQEGGSSESGGIAIVQEQQLAQQQQPVEDINPVQQLAQQATAEQVTRVRAEQQEVLRRDALREPGELIARVVVSIKSDAFPLGFPDVGPFPELDTEDARLIVTAFGRSGPPVASRRVPLKGLKFPALLELTADDLAFPLTKEVWLNDARAQDEIGVAVVLDVDGKLATLDAGDLTGYGISKPIKLGGQVQRTEAIVTVQVNKALEEKGQAALPSMEIAVLERIDALLDLKESIAATAAAAPAAPA 313
BLAST of mRNA_C-linearis_contig8.15823.1 vs. uniprot
Match: A0A4D9DAT9_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DAT9_9STRA) HSP 1 Score: 101 bits (252), Expect = 1.420e-20 Identity = 54/144 (37.50%), Postives = 91/144 (63.19%), Query Frame = 1
Query: 391 DLIARVLVSIKQ-DLYDLGAPDTSGFP--AIDTDDARLIVAAFGKDGPPVAAKRLTVKGRQFPVTVELTVDDLAFPLTKEAWRLDARSKEDIGLAVEIDPDGKAATLDSESLTGYGVSKPLRIGAQLERTEAAVELVVNPQLKE 813
D+IA+ V + + + Y LG P+ G A++ D+A L++ +G++G PVAAK++ ++G QFP ELT ++L FPLTKE W D R+ +D+G++ +D DGK +T + L G+G+SKP+ I R +A +++ +K+
Sbjct: 147 DVIAKGTVRLPEIEGYPLG-PERPGVINYALENDNAALLITCYGREGGPVAAKKIQLRGLQFPYNFELTFNNLLFPLTKETWEKDNRAFDDLGISALLDLDGKFSTANENDLLGFGISKPVAIAGSQIRRDALIQVTPRTGVKQ 289 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15823.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig8.15823.1 >prot_C-linearis_contig8.15823.1 ID=prot_C-linearis_contig8.15823.1|Name=mRNA_C-linearis_contig8.15823.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=312bp MRSRVVAALFLASAVDSFHVNTLGRPHVIRSSSSRGSGSRDSSTAMRMGAback to top mRNA from alignment at C-linearis_contig8:3717174..3721513+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig8.15823.1 ID=mRNA_C-linearis_contig8.15823.1|Name=mRNA_C-linearis_contig8.15823.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4340bp|location=Sequence derived from alignment at C-linearis_contig8:3717174..3721513+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig8:3717174..3721513+ >mRNA_C-linearis_contig8.15823.1 ID=mRNA_C-linearis_contig8.15823.1|Name=mRNA_C-linearis_contig8.15823.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1872bp|location=Sequence derived from alignment at C-linearis_contig8:3717174..3721513+ (Chordaria linearis ClinC8C monoicous)back to top |