prot_C-linearis_contig8.15813.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig8.15813.1
Unique Nameprot_C-linearis_contig8.15813.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length732
Homology
BLAST of mRNA_C-linearis_contig8.15813.1 vs. uniprot
Match: A0A6H5JG03_9PHAE (BHLH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG03_9PHAE)

HSP 1 Score: 414 bits (1065), Expect = 1.830e-132
Identity = 282/448 (62.95%), Postives = 308/448 (68.75%), Query Frame = 0
Query:  116 PFSLEQLDALTAA-GGSAGSAGXXXXASAMNDSDGYTD-AALNATGLGLWGWCFPXXXXTVGATGGAQKPAGXXXXXXXXXXXXGTIVAGVPGFGGIGKFQAVAATAAVSTTAPGGGGLRQVGTGXXXXXXXXXXXXXXQHLEPGDGGSP---GAYGG-----SRGGDTSSSGSSYGAAGLGA-AAVAHEYGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPSSSELKRQERNAREQRRSLMTSRQIDKLRQLLQECGVNTKASKGSVLSEVASYTAQLQQQVQQLEEERARWMAETADVPEVEPQDPNGGAIDCKQVFAHASVALAMATVEGRLIESNLQFEALSGHRKDELKQLTLLSLTAPSDLQETFRRLSAMLTDGTGKAPEQVLSKAILKNKDQDLSLSLTLVRDALGRPKYFLCSLLPNTPAASPSSSPVPGP 552
            PF   QL AL AA GG +G +G          ++GY D AA++ATGLGLWGWCFP     +GA  G +  A       X     GTI+AGVPG G +G FQA+A + A +  A G                        Q LEPGD   P   GA+GG     + GG  SSS       G+G   A AH  G           XXXXXXXXXXX              NPS  ELKRQERNAREQRRSLMTSRQIDKLR+LLQECG+ TKA+K SVLSEVASYTAQLQQQ++QLEEERARWMAET+DVPEV  QDPNGG IDCKQVFAHASVALAMATVEGRLIESNLQFEALSGHR +ELKQLTLLSLTAPS+LQETF+RLSAMLTDGTGKAPE VLSKA+LKNKDQDLSLSLTLVRDALGRPKYFLCSLLPNTPAASP  S VPGP
Sbjct:    2 PFPSHQLGALMAASGGDSGGSGT---------NNGYPDVAAMDATGLGLWGWCFPSPTPIMGA--GVEGRAPISAGAGXGARAGGTILAGVPGLGSVGNFQALATSPAATLAAAG------------PQQYPRPMPRGQQFLEPGDVRPPNVAGAWGGVSRINNAGGGVSSSEGEVAGLGVGELGAAAHSGGTEQQEGSVGSGXXXXXXXXXXX--------------NPS--ELKRQERNAREQRRSLMTSRQIDKLRKLLQECGIQTKANKSSVLSEVASYTAQLQQQIEQLEEERARWMAETSDVPEVGRQDPNGGTIDCKQVFAHASVALAMATVEGRLIESNLQFEALSGHRNEELKQLTLLSLTAPSELQETFQRLSAMLTDGTGKAPEHVLSKAVLKNKDQDLSLSLTLVRDALGRPKYFLCSLLPNTPAASPPLSTVPGP 410          
BLAST of mRNA_C-linearis_contig8.15813.1 vs. uniprot
Match: D7G8G2_ECTSI (BHLH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8G2_ECTSI)

HSP 1 Score: 292 bits (748), Expect = 4.540e-89
Identity = 239/381 (62.73%), Postives = 259/381 (67.98%), Query Frame = 0
Query:  116 PFSLEQLDALTAA-GGSAGSAGXXXXASAMNDSDGYTD-AALNATGLGLWGWCFPXXXXTVGATGGAQKPAGXXXXXXXXXXXXGTIVAGVPGFGGIGKFQAVAATAAVSTTAPGGGGLRQVGTGXXXXXXXXXXXXXXQHLEPGDGGSP---GAYGG-----SRGGDTSSSGSSYGAAG---LGAAAVAHEYGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPSSSELKRQERNAREQRRSLMTSRQIDKLRQLLQECGVNTKASKGSVLSEVASYTAQLQQQVQQLEEERARWMAETADVPEVEPQDPNGGAIDCKQVFAHASVALAMATVEGRLIESNLQFEALSGHRKDELKQLTLLSLTAPSDLQETF 483
            PF   QL AL AA GG  G++G          ++GY D AAL+ATGLGLWGWCFP     +GA  G +    XXXXXXXXX   GTI+AGVPG G +G FQA+AAT A      G                        Q LEPGD   P   GA+GG     + GG  SSS       G   LGAAA                  XXXXXXXXXXXXXXXXXXXXXXXX    SELKRQERNAREQRRSLMTSRQIDKLR+LLQECG+ TKA+K SVLSEVASYTAQLQQQ++QLEEERARWMAET+DVPEV  QDPNGG IDCKQVFAHASVALAMATVEGRLIESNLQFEALSGHR +ELKQLTLLSLTAPS+LQETF
Sbjct:    2 PFPSHQLGALMAASGGDCGNSGT---------NNGYRDVAALDATGLGLWGWCFPSPTPIMGA--GVEGXXXXXXXXXXXXRAGGTILAGVPGLGSVGNFQALAATPAAXXXXXG------------PQQYPRPMPRGQQFLEPGDVRPPNAAGAWGGVSGVNNAGGGVSSSEGDVAGLGVDELGAAAAXXXX-------------XXXXXXXXXXXXXXXXXXXXXXXXXXXPSELKRQERNAREQRRSLMTSRQIDKLRKLLQECGIQTKANKSSVLSEVASYTAQLQQQIEQLEEERARWMAETSDVPEVGRQDPNGGTIDCKQVFAHASVALAMATVEGRLIESNLQFEALSGHRNEELKQLTLLSLTAPSELQETF 346          
BLAST of mRNA_C-linearis_contig8.15813.1 vs. uniprot
Match: A0A7S3XZX8_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XZX8_HETAK)

HSP 1 Score: 130 bits (327), Expect = 1.030e-29
Identity = 84/206 (40.78%), Postives = 122/206 (59.22%), Query Frame = 0
Query:  337 SELKRQERNAREQRRSLMTSRQIDKLRQLLQECGVNTKASKGSVLSEVASYTAQLQQQVQQLEEERARWMAET-ADVPEVEPQ---DPNGGAIDCKQVFAHASVALAMATVEGRLIESNLQFEALSGHRKDELKQLTLLSLTAPSDLQETFRRLSAMLTDGTGKAPEQVLSKAILKNKDQDLS-LSLTLVRDA-LGRPKYFLCSLL 536
            +E KR++RN REQ+RS+  S+QID+LR LLQE G   K +K +VLS V  Y AQL +Q Q L+ ER +W+AE  A  PE E +    P G   D ++VF H  +  A+A V+GR ++ N +FE  +G+ + ++ +LTL +L AP DLQ  F  +  M++   G   E VL    LK   +  + L+L LVR      P++F C +L
Sbjct:   23 NEKKRKDRNMREQKRSVKISKQIDRLRALLQEAGAQVKPNKHAVLSGVVHYMAQLHKQAQALDLERRQWLAEAHAGAPEAEAKARPGPAGAPCDYRRVFQHMGLPAAVAAVDGRFVDCNAKFEEATGYSRRDVVRLTLFNLAAPHDLQRLFSVVGQMMSGRYGGGGEHVLEHVRLKGGTRARAKLALRLVRGGPANAPQFFHCVML 228          
BLAST of mRNA_C-linearis_contig8.15813.1 vs. uniprot
Match: A0A4D9CZ03_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CZ03_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 6.510e-14
Identity = 68/242 (28.10%), Postives = 120/242 (49.59%), Query Frame = 0
Query:  340 KRQERNAREQRRSLMTSRQIDKLRQLLQECGVNTKA-SKGSVLSEVASYTAQLQQQV-----------------------------QQLEEERARWMAETADVPEVEPQDPNGGA--IDCKQVFAHASVALAMATVEGRLIESNLQFEALSGHRKDELKQLTLLSLTAPSDLQETFRRLSAMLTDGTGKAPEQVLSKAI--------------LKNKDQDLSLSLTLVRDALGRPKYFLCSL 535
            ++Q+RNAREQ+RSL  S+QI  L+ LL+E G   K  SK ++L  V  Y  +L+++V                             + + +   R  ++ + V     ++    A  +    +F   S  LA+A+VEGR I++N++FE  +G+ K EL++LT  +L AP +LQ+TF  ++ ML   +G+  ++  S+ +              L  + Q+L ++++LV+       +F CSL
Sbjct:   28 RKQDRNAREQKRSLKISQQIGHLKSLLEEEGRKVKKNSKMAILLSVEDYIKELEEEVGGMVLGREGGXXXXXXXXXXMDVGVGTSVEAVGQRNGRSESDLSVVTATSVREDREVARGVGYHSLFKQVSTPLAVASVEGRFIDANVRFEMATGYTKAELERLTFFNLVAPEELQDTFAAVARMLNQPSGEEEDKEDSEMLRLTRRALPKVGIGGLGQQAQNLHITISLVKPQEDSMAFFQCSL 269          
BLAST of mRNA_C-linearis_contig8.15813.1 vs. uniprot
Match: A0A7S1BWH9_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BWH9_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 5.650e-13
Identity = 58/177 (32.77%), Postives = 91/177 (51.41%), Query Frame = 0
Query:  335 SSSELKRQERNAREQRRSLMTSRQIDKLRQLLQECGVNTKASKGSVLSEVASYTAQLQQQVQQLEEE---------RARWMAETADVPEVEPQDPNGGAIDCKQVFAHA----------SVALAMATVEGRLIESNLQFEALSGHRKDELKQLTLLSLTAPSDLQETFRRLSAMLTD 492
            S  E +R +RN REQ+RS   S+QI +L+ +L    +  K +K S+L   A Y  QLQ +   L+ E         +A  M  T   P+   Q  N  +ID   VF             S A+A+A+++GR ++ N+QFE +SG+ K+EL + TL +     D++E F+ +  ML +
Sbjct:  116 SIDEKRRYDRNLREQQRSYKISQQIKELKTVLSNSNIPFKPNKFSILLSTAVYIKQLQSRAMLLDSEHQKLLNSIGQASEMVTTGQSPDDLAQASNTNSIDADLVFVQGLQYSNIFYQCSAAIAVASLDGRFLDCNIQFEKVSGYTKEELTRETLFNFLTNDDMEEVFKVMGQMLKE 292          
BLAST of mRNA_C-linearis_contig8.15813.1 vs. uniprot
Match: W7TXM2_9STRA (Uncharacterized protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TXM2_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 1.410e-8
Identity = 35/118 (29.66%), Postives = 66/118 (55.93%), Query Frame = 0
Query:  420 PNGGAIDCKQVFAHASVALAMATVEGRLIESNLQFEALSGHRKDELKQLTLLSLTAPSDLQETFRRLSAMLTDGTGKAPEQVLSKAILKNKDQDLSLSLTLVRDALGRPKYFLCSLLP 537
            PN  + D   +F +AS+A+A+A+++G+ ++ N  F  +SG+   E+ Q ++  LT   D QE    +  M+ +   ++ +    +   +N+D    +S+ LVR A G P +F C++LP
Sbjct:  298 PNKKSADYALMFQNASIAMAVASLDGKFVDCNSAFSIISGYSNGEVLQRSVFDLTPAEDCQELMGIVGKMM-ESPAESAKHFWKRCCFENRDCHCFVSMWLVRKASGEPVFFQCAVLP 414          
BLAST of mRNA_C-linearis_contig8.15813.1 vs. uniprot
Match: UPI000A0184ED (EAL domain-containing protein n=1 Tax=Nevskia soli TaxID=418856 RepID=UPI000A0184ED)

HSP 1 Score: 60.8 bits (146), Expect = 8.060e-6
Identity = 34/126 (26.98%), Postives = 67/126 (53.17%), Query Frame = 0
Query:  417 PQDPNGGAIDCKQ----VFAHASVALAMATVEGRLIESNLQFEALSGHRKDELKQLTLLSLTAPSDLQETFRRLSAMLTDGTGKAPEQVLSKAILKNKDQDL---SLSLTLVRDALGRPKYFLCSL 535
            P+ P  G+   ++     F HAS+ +A+ +++GR ++ N    A+ G+  +EL +    +LT P DL      +  ++    G+    V+ K    ++D+ +   SLS+++VRD+ G+P YF+  +
Sbjct:   34 PEHPASGSAQSEERFRSAFTHASIGMALVSLDGRWLQVNKSLSAMMGYSMEELLKTDFQTLTHPDDLPADLEYVKCLVA---GEIQSYVMEKRYF-HRDRHIICASLSVSMVRDSAGKPLYFISQI 155          
BLAST of mRNA_C-linearis_contig8.15813.1 vs. uniprot
Match: A0A328ATZ7_9CAUL (Histidine kinase n=1 Tax=Phenylobacterium deserti TaxID=1914756 RepID=A0A328ATZ7_9CAUL)

HSP 1 Score: 59.7 bits (143), Expect = 2.150e-5
Identity = 36/107 (33.64%), Postives = 56/107 (52.34%), Query Frame = 0
Query:  431 FAHASVALAMATVEGRLIESNLQFEALSGHRKDELKQLTLLSLTAPSDLQETFRRLSAMLTDGTGKAPEQVLSKAILKNKDQDL--SLSLTLVRDALGRPKYFLCSL 535
            FAHAS+ +A+ T+EGR  + N  F  L G+  DE+  L   ++T P DL      +  ++    G+AP   L K  L+   Q +   LS+ LVR+  G P +F+  +
Sbjct:  555 FAHASIGMALVTLEGRFSKVNAAFCELIGYTADEVLALDFQTITHPEDLALDLAYIDRLMD---GQAPSYGLDKRYLRKDGQVVWVHLSVALVREPNGAPSHFVAQV 658          
BLAST of mRNA_C-linearis_contig8.15813.1 vs. uniprot
Match: A0A6L4YW74_9BACT (Uncharacterized protein n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A6L4YW74_9BACT)

HSP 1 Score: 58.2 bits (139), Expect = 6.620e-5
Identity = 32/114 (28.07%), Postives = 60/114 (52.63%), Query Frame = 0
Query:  428 KQVFAHASVALAMATVEGRLIESNLQFEALSGHRKDELKQLTLLSLTAPSDLQETFRRLSAMLTDGTGKAPEQVLSKAILKNKDQDL--SLSLTLVRDALGRPKYFLCSLLPNT 539
            +  F +A+  + M +++GR + +N  F  L G+ ++EL  +    +T P DLQ     L  ++    GKA     SK  +   ++ +   LS++LVRD + +PK+F+  ++  T
Sbjct:  490 RHAFDYAAAGICMVSIDGRFLRANEVFRQLLGYSEEELNIMHFNDITHPDDLQIGLDHLEMLVL---GKAQRASFSKRYISKSNRIIWGYLSISLVRDNMDKPKFFITHIIDQT 600          
BLAST of mRNA_C-linearis_contig8.15813.1 vs. uniprot
Match: A0A0U2SYI1_9STRA (BHLH transcription factor 1 n=2 Tax=Microchloropsis salina TaxID=2511165 RepID=A0A0U2SYI1_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 8.940e-5
Identity = 31/119 (26.05%), Postives = 65/119 (54.62%), Query Frame = 0
Query:  425 IDCKQVFAHASVALAMATVEGRLIESNLQFEALSGHRKDELKQLTLLSLTAPSDLQETFRRLSAMLTDGT--GKAPEQVLSKAILKNKD-----QDLSLSLTLVRDALGRPKYFLCSLL 536
            +D  ++F  + V +A+ +++GRL++ N++F  ++G+  D+L  +TL  L AP  L++ F+ ++ +L+      K P    + A           ++ ++ L+LVRD   R + F C ++
Sbjct:  508 LDFSEIFRSSHVPMAVVSIDGRLLQCNVEFSRVTGYTNDKLAGVTLFGLAAPECLEQLFKSIARLLSTAALDEKNPAYFATAAARATPFSHPGYKEANILLSLVRDEEHRARAFHCCIV 626          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15813.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6H5JG03_9PHAE1.830e-13262.95BHLH domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7G8G2_ECTSI4.540e-8962.73BHLH domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A7S3XZX8_HETAK1.030e-2940.78Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A4D9CZ03_9STRA6.510e-1428.10Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A7S1BWH9_9STRA5.650e-1332.77Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
W7TXM2_9STRA1.410e-829.66Uncharacterized protein n=3 Tax=Monodopsidaceae Ta... [more]
UPI000A0184ED8.060e-626.98EAL domain-containing protein n=1 Tax=Nevskia soli... [more]
A0A328ATZ7_9CAUL2.150e-533.64Histidine kinase n=1 Tax=Phenylobacterium deserti ... [more]
A0A6L4YW74_9BACT6.620e-528.07Uncharacterized protein n=1 Tax=Bacteroidetes bact... [more]
A0A0U2SYI1_9STRA8.940e-526.05BHLH transcription factor 1 n=2 Tax=Microchloropsi... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 29..63
NoneNo IPR availableCOILSCoilCoilcoord: 381..408
NoneNo IPR availableCOILSCoilCoilcoord: 66..86
NoneNo IPR availableGENE3D3.30.450.20coord: 426..536
e-value: 1.3E-7
score: 33.5
NoneNo IPR availablePANTHERPTHR15741BASIC HELIX-LOOP-HELIX ZIP TRANSCRIPTION FACTORcoord: 23..410
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainSMARTSM00353finuluscoord: 345..397
e-value: 1.8E-7
score: 40.8
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainPFAMPF00010HLHcoord: 340..392
e-value: 2.4E-5
score: 24.2
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainPROSITEPS50888BHLHcoord: 339..391
score: 10.944
IPR000014PAS domainTIGRFAMTIGR00229TIGR00229coord: 429..533
e-value: 1.2E-6
score: 26.7
IPR036638Helix-loop-helix DNA-binding domain superfamilyGENE3D4.10.280.10coord: 331..415
e-value: 4.1E-12
score: 47.8
IPR036638Helix-loop-helix DNA-binding domain superfamilySUPERFAMILY47459HLH, helix-loop-helix DNA-binding domaincoord: 330..404
IPR035965PAS domain superfamilySUPERFAMILY55785PYP-like sensor domain (PAS domain)coord: 431..534

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig8contigC-linearis_contig8:3650915..3655890 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig8.15813.1mRNA_C-linearis_contig8.15813.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig8 3650633..3656642 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig8.15813.1 ID=prot_C-linearis_contig8.15813.1|Name=mRNA_C-linearis_contig8.15813.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=732bp
MPNTLYPPSLPPLTVQQQAWQQQQHQAFQQQQRALHQQHQQALQQQQQQH
QAFQQQQAFQQQQAWHQQQQQQQQQQQQQQQQQQQQHHPGTVSVPAGWAG
RGGAVNFCSPSCHGAPFSLEQLDALTAAGGSAGSAGAGASASAMNDSDGY
TDAALNATGLGLWGWCFPSPTPTVGATGGAQKPAGAGAGAPAGAGAGGTI
VAGVPGFGGIGKFQAVAATAAVSTTAPGGGGLRQVGTGGLGERYAGPTAL
GQQHLEPGDGGSPGAYGGSRGGDTSSSGSSYGAAGLGAAAVAHEYGGGRG
GGGGGGGSGQEQEGSGQSEGDRDREGYSTSSSNPSSSELKRQERNAREQR
RSLMTSRQIDKLRQLLQECGVNTKASKGSVLSEVASYTAQLQQQVQQLEE
ERARWMAETADVPEVEPQDPNGGAIDCKQVFAHASVALAMATVEGRLIES
NLQFEALSGHRKDELKQLTLLSLTAPSDLQETFRRLSAMLTDGTGKAPEQ
VLSKAILKNKDQDLSLSLTLVRDALGRPKYFLCSLLPNTPAASPSSSPVP
GPPPSALSSGDDAPDTLSGGPGLPPSAAAPPAAAALCLSPTKAAGTATIT
DSGEGASDGGGDDGGSGGGGAAAAAAAALSPASDNGDKDGDGYSVDAVSD
EATAAENGVNNGCGSDSDVGSTMMSSSEVVELVGLFENNRGGGSVGGGVT
SESGGVAEEARASTSQPKDGTGSAGGELRTR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011598bHLH_dom
IPR000014PAS
IPR036638HLH_DNA-bd_sf
IPR035965PAS-like_dom_sf