mRNA_C-linearis_contig8.15813.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig8.15813.1 vs. uniprot
Match: A0A6H5JG03_9PHAE (BHLH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG03_9PHAE) HSP 1 Score: 414 bits (1065), Expect = 1.160e-128 Identity = 282/448 (62.95%), Postives = 308/448 (68.75%), Query Frame = 1
Query: 628 PFSLEQLDALTAA-GGSAGSAGXXXXASAMNDSDGYTD-AALNATGLGLWGWCFPXXXXTVGATGGAQKPAGXXXXXXXXXXXXGTIVAGVPGFGGIGKFQAVAATAAVSTTAPGGGGLRQVGTGXXXXXXXXXXXXXXQHLEPGDGGSP---GAYGG-----SRGGDTSSSGSSYGAAGLGA-AAVAHEYGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPSSSELKRQERNAREQRRSLMTSRQIDKLRQLLQECGVNTKASKGSVLSEVASYTAQLQQQVQQLEEERARWMAETADVPEVEPQDPNGGAIDCKQVFAHASVALAMATVEGRLIESNLQFEALSGHRKDELKQLTLLSLTAPSDLQETFRRLSAMLTDGTGKAPEQVLSKAILKNKDQDLSLSLTLVRDALGRPKYFLCSLLPNTPAASPSSSPVPGP 1938
PF QL AL AA GG +G +G ++GY D AA++ATGLGLWGWCFP +GA G + A X GTI+AGVPG G +G FQA+A + A + A G Q LEPGD P GA+GG + GG SSS G+G A AH G XXXXXXXXXXX NPS ELKRQERNAREQRRSLMTSRQIDKLR+LLQECG+ TKA+K SVLSEVASYTAQLQQQ++QLEEERARWMAET+DVPEV QDPNGG IDCKQVFAHASVALAMATVEGRLIESNLQFEALSGHR +ELKQLTLLSLTAPS+LQETF+RLSAMLTDGTGKAPE VLSKA+LKNKDQDLSLSLTLVRDALGRPKYFLCSLLPNTPAASP S VPGP
Sbjct: 2 PFPSHQLGALMAASGGDSGGSGT---------NNGYPDVAAMDATGLGLWGWCFPSPTPIMGA--GVEGRAPISAGAGXGARAGGTILAGVPGLGSVGNFQALATSPAATLAAAG------------PQQYPRPMPRGQQFLEPGDVRPPNVAGAWGGVSRINNAGGGVSSSEGEVAGLGVGELGAAAHSGGTEQQEGSVGSGXXXXXXXXXXX--------------NPS--ELKRQERNAREQRRSLMTSRQIDKLRKLLQECGIQTKANKSSVLSEVASYTAQLQQQIEQLEEERARWMAETSDVPEVGRQDPNGGTIDCKQVFAHASVALAMATVEGRLIESNLQFEALSGHRNEELKQLTLLSLTAPSELQETFQRLSAMLTDGTGKAPEHVLSKAVLKNKDQDLSLSLTLVRDALGRPKYFLCSLLPNTPAASPPLSTVPGP 410
BLAST of mRNA_C-linearis_contig8.15813.1 vs. uniprot
Match: D7G8G2_ECTSI (BHLH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8G2_ECTSI) HSP 1 Score: 292 bits (748), Expect = 1.960e-86 Identity = 239/381 (62.73%), Postives = 259/381 (67.98%), Query Frame = 1
Query: 628 PFSLEQLDALTAA-GGSAGSAGXXXXASAMNDSDGYTD-AALNATGLGLWGWCFPXXXXTVGATGGAQKPAGXXXXXXXXXXXXGTIVAGVPGFGGIGKFQAVAATAAVSTTAPGGGGLRQVGTGXXXXXXXXXXXXXXQHLEPGDGGSP---GAYGG-----SRGGDTSSSGSSYGAAG---LGAAAVAHEYGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPSSSELKRQERNAREQRRSLMTSRQIDKLRQLLQECGVNTKASKGSVLSEVASYTAQLQQQVQQLEEERARWMAETADVPEVEPQDPNGGAIDCKQVFAHASVALAMATVEGRLIESNLQFEALSGHRKDELKQLTLLSLTAPSDLQETF 1731
PF QL AL AA GG G++G ++GY D AAL+ATGLGLWGWCFP +GA G + XXXXXXXXX GTI+AGVPG G +G FQA+AAT A G Q LEPGD P GA+GG + GG SSS G LGAAA XXXXXXXXXXXXXXXXXXXXXXXX SELKRQERNAREQRRSLMTSRQIDKLR+LLQECG+ TKA+K SVLSEVASYTAQLQQQ++QLEEERARWMAET+DVPEV QDPNGG IDCKQVFAHASVALAMATVEGRLIESNLQFEALSGHR +ELKQLTLLSLTAPS+LQETF
Sbjct: 2 PFPSHQLGALMAASGGDCGNSGT---------NNGYRDVAALDATGLGLWGWCFPSPTPIMGA--GVEGXXXXXXXXXXXXRAGGTILAGVPGLGSVGNFQALAATPAAXXXXXG------------PQQYPRPMPRGQQFLEPGDVRPPNAAGAWGGVSGVNNAGGGVSSSEGDVAGLGVDELGAAAAXXXX-------------XXXXXXXXXXXXXXXXXXXXXXXXXXXPSELKRQERNAREQRRSLMTSRQIDKLRKLLQECGIQTKANKSSVLSEVASYTAQLQQQIEQLEEERARWMAETSDVPEVGRQDPNGGTIDCKQVFAHASVALAMATVEGRLIESNLQFEALSGHRNEELKQLTLLSLTAPSELQETF 346
BLAST of mRNA_C-linearis_contig8.15813.1 vs. uniprot
Match: A0A7S3XZX8_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XZX8_HETAK) HSP 1 Score: 130 bits (327), Expect = 1.890e-29 Identity = 84/206 (40.78%), Postives = 122/206 (59.22%), Query Frame = 1
Query: 1291 SELKRQERNAREQRRSLMTSRQIDKLRQLLQECGVNTKASKGSVLSEVASYTAQLQQQVQQLEEERARWMAET-ADVPEVEPQ---DPNGGAIDCKQVFAHASVALAMATVEGRLIESNLQFEALSGHRKDELKQLTLLSLTAPSDLQETFRRLSAMLTDGTGKAPEQVLSKAILKNKDQDLS-LSLTLVRDA-LGRPKYFLCSLL 1890
+E KR++RN REQ+RS+ S+QID+LR LLQE G K +K +VLS V Y AQL +Q Q L+ ER +W+AE A PE E + P G D ++VF H + A+A V+GR ++ N +FE +G+ + ++ +LTL +L AP DLQ F + M++ G E VL LK + + L+L LVR P++F C +L
Sbjct: 23 NEKKRKDRNMREQKRSVKISKQIDRLRALLQEAGAQVKPNKHAVLSGVVHYMAQLHKQAQALDLERRQWLAEAHAGAPEAEAKARPGPAGAPCDYRRVFQHMGLPAAVAAVDGRFVDCNAKFEEATGYSRRDVVRLTLFNLAAPHDLQRLFSVVGQMMSGRYGGGGEHVLEHVRLKGGTRARAKLALRLVRGGPANAPQFFHCVML 228
BLAST of mRNA_C-linearis_contig8.15813.1 vs. uniprot
Match: A0A4D9CZ03_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CZ03_9STRA) HSP 1 Score: 83.2 bits (204), Expect = 1.060e-13 Identity = 68/242 (28.10%), Postives = 120/242 (49.59%), Query Frame = 1
Query: 1300 KRQERNAREQRRSLMTSRQIDKLRQLLQECGVNTKA-SKGSVLSEVASYTAQLQQQV-----------------------------QQLEEERARWMAETADVPEVEPQDPNGGA--IDCKQVFAHASVALAMATVEGRLIESNLQFEALSGHRKDELKQLTLLSLTAPSDLQETFRRLSAMLTDGTGKAPEQVLSKAI--------------LKNKDQDLSLSLTLVRDALGRPKYFLCSL 1887
++Q+RNAREQ+RSL S+QI L+ LL+E G K SK ++L V Y +L+++V + + + R ++ + V ++ A + +F S LA+A+VEGR I++N++FE +G+ K EL++LT +L AP +LQ+TF ++ ML +G+ ++ S+ + L + Q+L ++++LV+ +F CSL
Sbjct: 28 RKQDRNAREQKRSLKISQQIGHLKSLLEEEGRKVKKNSKMAILLSVEDYIKELEEEVGGMVLGREGGXXXXXXXXXXMDVGVGTSVEAVGQRNGRSESDLSVVTATSVREDREVARGVGYHSLFKQVSTPLAVASVEGRFIDANVRFEMATGYTKAELERLTFFNLVAPEELQDTFAAVARMLNQPSGEEEDKEDSEMLRLTRRALPKVGIGGLGQQAQNLHITISLVKPQEDSMAFFQCSL 269
BLAST of mRNA_C-linearis_contig8.15813.1 vs. uniprot
Match: A0A7S1BWH9_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BWH9_9STRA) HSP 1 Score: 82.0 bits (201), Expect = 9.690e-13 Identity = 58/177 (32.77%), Postives = 91/177 (51.41%), Query Frame = 1
Query: 1285 SSSELKRQERNAREQRRSLMTSRQIDKLRQLLQECGVNTKASKGSVLSEVASYTAQLQQQVQQLEEE---------RARWMAETADVPEVEPQDPNGGAIDCKQVFAHA----------SVALAMATVEGRLIESNLQFEALSGHRKDELKQLTLLSLTAPSDLQETFRRLSAMLTD 1758
S E +R +RN REQ+RS S+QI +L+ +L + K +K S+L A Y QLQ + L+ E +A M T P+ Q N +ID VF S A+A+A+++GR ++ N+QFE +SG+ K+EL + TL + D++E F+ + ML +
Sbjct: 116 SIDEKRRYDRNLREQQRSYKISQQIKELKTVLSNSNIPFKPNKFSILLSTAVYIKQLQSRAMLLDSEHQKLLNSIGQASEMVTTGQSPDDLAQASNTNSIDADLVFVQGLQYSNIFYQCSAAIAVASLDGRFLDCNIQFEKVSGYTKEELTRETLFNFLTNDDMEEVFKVMGQMLKE 292
BLAST of mRNA_C-linearis_contig8.15813.1 vs. uniprot
Match: W7TXM2_9STRA (Uncharacterized protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TXM2_9STRA) HSP 1 Score: 69.3 bits (168), Expect = 2.450e-8 Identity = 35/118 (29.66%), Postives = 66/118 (55.93%), Query Frame = 1
Query: 1540 PNGGAIDCKQVFAHASVALAMATVEGRLIESNLQFEALSGHRKDELKQLTLLSLTAPSDLQETFRRLSAMLTDGTGKAPEQVLSKAILKNKDQDLSLSLTLVRDALGRPKYFLCSLLP 1893
PN + D +F +AS+A+A+A+++G+ ++ N F +SG+ E+ Q ++ LT D QE + M+ + ++ + + +N+D +S+ LVR A G P +F C++LP
Sbjct: 298 PNKKSADYALMFQNASIAMAVASLDGKFVDCNSAFSIISGYSNGEVLQRSVFDLTPAEDCQELMGIVGKMM-ESPAESAKHFWKRCCFENRDCHCFVSMWLVRKASGEPVFFQCAVLP 414
BLAST of mRNA_C-linearis_contig8.15813.1 vs. uniprot
Match: UPI000A0184ED (EAL domain-containing protein n=1 Tax=Nevskia soli TaxID=418856 RepID=UPI000A0184ED) HSP 1 Score: 60.8 bits (146), Expect = 1.370e-5 Identity = 34/126 (26.98%), Postives = 67/126 (53.17%), Query Frame = 1
Query: 1531 PQDPNGGAIDCKQ----VFAHASVALAMATVEGRLIESNLQFEALSGHRKDELKQLTLLSLTAPSDLQETFRRLSAMLTDGTGKAPEQVLSKAILKNKDQDL---SLSLTLVRDALGRPKYFLCSL 1887
P+ P G+ ++ F HAS+ +A+ +++GR ++ N A+ G+ +EL + +LT P DL + ++ G+ V+ K ++D+ + SLS+++VRD+ G+P YF+ +
Sbjct: 34 PEHPASGSAQSEERFRSAFTHASIGMALVSLDGRWLQVNKSLSAMMGYSMEELLKTDFQTLTHPDDLPADLEYVKCLVA---GEIQSYVMEKRYF-HRDRHIICASLSVSMVRDSAGKPLYFISQI 155
BLAST of mRNA_C-linearis_contig8.15813.1 vs. uniprot
Match: A0A328ATZ7_9CAUL (Histidine kinase n=1 Tax=Phenylobacterium deserti TaxID=1914756 RepID=A0A328ATZ7_9CAUL) HSP 1 Score: 59.7 bits (143), Expect = 3.660e-5 Identity = 36/107 (33.64%), Postives = 56/107 (52.34%), Query Frame = 1
Query: 1573 FAHASVALAMATVEGRLIESNLQFEALSGHRKDELKQLTLLSLTAPSDLQETFRRLSAMLTDGTGKAPEQVLSKAILKNKDQDL--SLSLTLVRDALGRPKYFLCSL 1887
FAHAS+ +A+ T+EGR + N F L G+ DE+ L ++T P DL + ++ G+AP L K L+ Q + LS+ LVR+ G P +F+ +
Sbjct: 555 FAHASIGMALVTLEGRFSKVNAAFCELIGYTADEVLALDFQTITHPEDLALDLAYIDRLMD---GQAPSYGLDKRYLRKDGQVVWVHLSVALVREPNGAPSHFVAQV 658 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15813.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig8.15813.1 >prot_C-linearis_contig8.15813.1 ID=prot_C-linearis_contig8.15813.1|Name=mRNA_C-linearis_contig8.15813.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=732bp MPNTLYPPSLPPLTVQQQAWQQQQHQAFQQQQRALHQQHQQALQQQQQQHback to top mRNA from alignment at C-linearis_contig8:3650633..3656642+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig8.15813.1 ID=mRNA_C-linearis_contig8.15813.1|Name=mRNA_C-linearis_contig8.15813.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=6010bp|location=Sequence derived from alignment at C-linearis_contig8:3650633..3656642+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig8:3650633..3656642+ >mRNA_C-linearis_contig8.15813.1 ID=mRNA_C-linearis_contig8.15813.1|Name=mRNA_C-linearis_contig8.15813.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=4392bp|location=Sequence derived from alignment at C-linearis_contig8:3650633..3656642+ (Chordaria linearis ClinC8C monoicous)back to top |