prot_C-linearis_contig8.15691.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig8.15691.1
Unique Nameprot_C-linearis_contig8.15691.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length175
Homology
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BLAST of mRNA_C-linearis_contig8.15691.1 vs. uniprot
Match: MYBH_DICDI (Myb-like protein H n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=MYBH_DICDI)

HSP 1 Score: 56.2 bits (134), Expect = 4.940e-6
Identity = 28/65 (43.08%), Postives = 42/65 (64.62%), Query Frame = 0 
Query:    2 SSSSSTTRFNTGPWSNEEHQNFLRGVAAHGCGNWTAIGVLVRTRNPQQIEVHAGQHFAQSAEEQG 66
            SSS +    NT PWSNEEH+ FL+ +  +G GNW  I  L+++RN  QI+ HA  +F + +++ G
Sbjct:  220 SSSHNLPSHNT-PWSNEEHELFLKAIEKYGRGNWKLISTLIKSRNTLQIKNHARIYFDKISQQNG 283
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15691.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
MYBH_DICDI4.940e-643.08Myb-like protein H n=1 Tax=Dictyostelium discoideu... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001005SANT/Myb domainSMARTSM00717santcoord: 11..60
e-value: 9.0E-7
score: 38.5
IPR001005SANT/Myb domainPFAMPF00249Myb_DNA-bindingcoord: 12..52
e-value: 2.8E-9
score: 37.0
NoneNo IPR availableGENE3D1.10.10.60coord: 13..63
e-value: 2.2E-9
score: 39.3
NoneNo IPR availablePANTHERPTHR44191FAMILY NOT NAMEDcoord: 11..70
NoneNo IPR availablePANTHERPTHR44191:SF12coord: 11..70
IPR017930Myb domainPROSITEPS51294HTH_MYBcoord: 7..62
score: 12.588
IPR009057Homeobox-like domain superfamilySUPERFAMILY46689Homeodomain-likecoord: 8..59

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig8contigC-linearis_contig8:2620522..2623191 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig8.15691.1mRNA_C-linearis_contig8.15691.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig8 2619858..2624376 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig8.15691.1 ID=prot_C-linearis_contig8.15691.1|Name=mRNA_C-linearis_contig8.15691.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=175bp
MSSSSSTTRFNTGPWSNEEHQNFLRGVAAHGCGNWTAIGVLVRTRNPQQI
EVHAGQHFAQSAEEQGLARTENSLSSRPNNSCHRPSVQVASAPSAAALLQ
RLVQRWALACATSATEAFCTTGRAFCSAAAAAASGDWMWPNEVHRAQALR
WEPFVALNISAEKNKTMVMTRTTT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001005SANT/Myb
IPR017930Myb_dom
IPR009057Homeobox-like_sf