mRNA_C-linearis_contig8.15691.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig8.15691.1
Unique NamemRNA_C-linearis_contig8.15691.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15691.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig8contigC-linearis_contig8:2619858..2624376 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size1845
Cds size525
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig8.15691.1prot_C-linearis_contig8.15691.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig8 2620522..2623191 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930551.7782452-UTR-C-linearis_contig8:2619857..26205211622930551.7782452-UTR-C-linearis_contig8:2619857..2620521Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 2619858..2620521 -
1690881128.271938-UTR-C-linearis_contig8:2619857..26205211690881128.271938-UTR-C-linearis_contig8:2619857..2620521Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 2619858..2620521 -
1622930551.8521929-UTR-C-linearis_contig8:2623191..26233051622930551.8521929-UTR-C-linearis_contig8:2623191..2623305Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 2623192..2623305 -
1690881128.3134804-UTR-C-linearis_contig8:2623191..26233051690881128.3134804-UTR-C-linearis_contig8:2623191..2623305Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 2623192..2623305 -
1622930551.8693576-UTR-C-linearis_contig8:2623834..26243761622930551.8693576-UTR-C-linearis_contig8:2623834..2624376Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 2623835..2624376 -
1690881128.3255706-UTR-C-linearis_contig8:2623834..26243761690881128.3255706-UTR-C-linearis_contig8:2623834..2624376Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 2623835..2624376 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930551.7927387-CDS-C-linearis_contig8:2620521..26208331622930551.7927387-CDS-C-linearis_contig8:2620521..2620833Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2620522..2620833 -
1690881128.2835648-CDS-C-linearis_contig8:2620521..26208331690881128.2835648-CDS-C-linearis_contig8:2620521..2620833Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2620522..2620833 -
1622930551.8123214-CDS-C-linearis_contig8:2621350..26215581622930551.8123214-CDS-C-linearis_contig8:2621350..2621558Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2621351..2621558 -
1690881128.2930655-CDS-C-linearis_contig8:2621350..26215581690881128.2930655-CDS-C-linearis_contig8:2621350..2621558Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2621351..2621558 -
1622930551.8322978-CDS-C-linearis_contig8:2623186..26231911622930551.8322978-CDS-C-linearis_contig8:2623186..2623191Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2623187..2623191 -
1690881128.3027802-CDS-C-linearis_contig8:2623186..26231911690881128.3027802-CDS-C-linearis_contig8:2623186..2623191Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2623187..2623191 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig8.15691.1

>prot_C-linearis_contig8.15691.1 ID=prot_C-linearis_contig8.15691.1|Name=mRNA_C-linearis_contig8.15691.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=175bp
MSSSSSTTRFNTGPWSNEEHQNFLRGVAAHGCGNWTAIGVLVRTRNPQQI
EVHAGQHFAQSAEEQGLARTENSLSSRPNNSCHRPSVQVASAPSAAALLQ
RLVQRWALACATSATEAFCTTGRAFCSAAAAAASGDWMWPNEVHRAQALR
WEPFVALNISAEKNKTMVMTRTTT*
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mRNA from alignment at C-linearis_contig8:2619858..2624376-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig8.15691.1 ID=mRNA_C-linearis_contig8.15691.1|Name=mRNA_C-linearis_contig8.15691.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4519bp|location=Sequence derived from alignment at C-linearis_contig8:2619858..2624376- (Chordaria linearis ClinC8C monoicous)
TTCGTGCTTGCAGCGGCGCTGACACACACGCGGCGGCGCGTTCTAGAAGC
AGCAGATTGTCTCAACCGGTTGCCCACCGACGAAGTTGATGGCAGGTTCG
ATCGCAGAGATAGCAATGGTGCTGACATGTTGGTTCCAGAGCGGCAGAGA
GGTGCACAACGCTCGCCCGCAAAGGAGTTGTTCCGTGAGTCTATAGACTA
GGGGACCACAGGCTGTGCCCCCTCGAAAATAAAACACGGCGTGTCACCAA
GTGTACAGTCCGCCGGATCCACTACGAAAGTACAGAGGGCAAACACCTCT
CTTTGCTCTCTTTGTCAGCCCGTCTCGCCCATCACCTCAGATTTTGACCG
GCCCCTCGTTTCGCAGGGTGGGAGACGGAAGCCGAAAAAGTTGAAACGTC
GAACCCGCGCGCGAGGCCTTTGAGGGGCGAACGGAAAGGAGCAATCCGCT
ACAGCATTATTACTTGTAACAAGTGAGAGGAGGGTGTTTCTCACGCGAAG
AGTCTTGCACACGCAACGACATTTTTGTACGTGTGTGTGAAGGTGCGCTG
ATTTTATGGATGTCTCATGGACTCGTAGTTTGGGGCTTGGCTGTGTCAAC
GTGGCCCTTGCTTCCCTCGTGAGCCTCGCCAAATAGTCACGTGCTGAATG
CACGCTTGGACTAGAGATTTATCTCTTTGAGGGGAGGTTCGTTCTTTGAT
GCGCGCGCGAGTTGAAGAAAAACAAAGTGTTGGGTAGGTCGGATTAATCT
TCGATACGTAAAAAGATCAGGATCCTGACGAGGTTGGCGTTAAATACGAC
AGATGACAACAGCGAATAGTCAAACAAATGACAACGAGCACGCTCTCCGC
CCGCGCTCTCTCGCTTTACAAGCAGTCTCACCAGATGGCCAGAAGCCGCC
GACAACCCCCACCACTATGCCGCTCCCCCACAATCCCCTTTCAGTCGCCC
CACCGCCTCCCTGCAACTAATTTGTCCTCGAGATCGACATCAGCTCGCAC
ACACAAGCCTACCCCACATCTCCCTGCTGGGTTCCGTCGCCTCCACGTCG
CCTTTTTCGCCACCCAACAAGACACTGAGGAGCGCTTCACCAGCTTCATT
TTTCTGGTGGCACGCACACATCGGTCATCGATCTATTCCTGCAAGAGGCT
CAAACATACGCAGTCCGCCAGCGCGCTTGGGGAGAATGAGGTCAGGCAAA
TTGTTGTTCCGTGTGGCGGGGTGGAGAAAGCAGCACGTACATCCTACTAG
CAGTCCGTGTGTTTGTTGGGTATCTTGGTACAGAGGGGGACAGATAGACG
GGCAGACACGTTTACTTGGTGTGTGTGTCGGGTGTCGGAAATGGCCGCAC
GGTAGTCTCGCAACCGTACATGCCAAACAAGAAGTCCGCGGAAGGGAGCG
CGCGCGCGGACAGAGGCATGGGAGGGAGGAAATGGGAAAGGGACCCGCCC
TCTCCTCGATTTTTCCCGCACGCAGCAACAACAATTTTTACGTTCGTGGA
AGAGGGTTCAAGGTTCAAAATGGTTGGGCGTGTGCACGAGTACCAGTTCT
GTTAAAACAATACGGCATCAAAGAGAGAACCTCCTCAAAGAGATATAGGT
CTCTAAGCGGTGGACTAACAGTTCAATACAGCAGTGATGTGATATGGGAT
GTGTGGAAAACAAAAAGCAAAATATATATTTGCTGTTGACCCGGCAGAGC
GTTGCAGGGGAGGTTTATGACGTTTTCCCAGTTGTAGGTGTTTTTCTTCT
CCATCTAGATCTATCCCATATTACGTCACTGTATTGAACTGCTAATCCAC
CACTTAAGATATTTGTCTCGTGGAGGGGAGGTTCTTTCTTTGATGCCGTT
TTGATTTATAAAAAGCCACCCAAAAGTTGGAAAAAGTCAAAACCCTACAA
CACCTCCTTTGCAACTCTCTGCCGGGCCAACAGCAAAAATATCGGGAAGA
AACCCACCGTAAAGCTGTGGTATTGTGAACAATTTCTCAGTAACACAACA
GGAACACATCGTCGCCGGGGTTGACATCGTCAAGTTGCTGGTTTAGTGAG
AAAAACTGTCTAGTCTGGGTACAGGTGTCCTCCGGGGGTAGCAGCGCGGA
CGGACGTTGGGCAAAATGTACAAACAAACACTGGTTCCCCGAGAAGAGCC
ACATCCCTGGAAGGGGCCGTCTTGAGGATAGAGTTGGAGGACGCAATTTT
TGTTATAAGAGAGGGCGCGTGCGGAGCAGGCCGTAGCAAGATCCCTCTGG
CAAAATATCCCGCCGGCTAAACATTAAAGTACCCCCCCCTGCCGTTGAGG
GTGGGGCGAAATGTAAACTCATGGGCGATTTGGAGCGTTGAAAACCTTGC
TAGTAGAATAAACTTCTACTTCGAAGTATATGTACGAACAATTAGCTCTC
AGTGACAAATGAAAAAGATACAAACAAAGCGTACCTTGGTACAACGCTAT
CGGCCAGAATTTGTTTTCGTCGCAAAACACAACAAGGCACCAAAGTTTGT
CGTCTTCAAAAGCCTTGCAGGGCGAGGAGGAGAAGACGCCTAAGGGCTAT
ACTGATGATACATGGTATGAAAAGAGTCAAGCAGACCAAGAAACACGGGT
TCAAAGTCCAGTGCAGGGTCTGCACCTGTCACCCTGTTACGTAGCGGTAA
AGTGTAGGTAAAGAAACGACATACACACACAGAGGGAGGGAGAGAGAGAG
AGAGAGATAGAGAGCACGGCATCTACGGAAACACATCATGTCTGCTTCGT
ACTTACACAACCCCAACCGAGAGACACAACTCTTTCTTCTACACCCCTGC
ATGTTGGCAAAAACACAGCAGCAGTAGTAGCACCACCCGGTTCAACACTG
GGCCGTGGTCGAACGAGGAGCACCAGAATTTCCTGCGCGGGGTTGCGGCG
CACGGCTGCGGCAACTGGACCGCCATCGGAGTGCTCGTGCGCACGCGAAA
CCCGCAGCAGATCGAGGTCCACGCCGGCCAGCACTTCGCCCAGAGCGCGG
AGGAGCAAGGTCTTGCACGCACCGAGGTAACAAAATTGGCACACGCATCG
TTTTTGTTCTCTCGAGTTTGTTACGCGTTTGTTGACCGAAATTTGGTTTG
GTTTCCGCTTTTTTCTCGGCCTGCTTTTTTGTCCGACCGCGGACATTTTC
TTGTCTCCGAAGGCAACCAAGTGTAGCTAATTTACACAGTACAGGCCCTC
CTCTCACGATTGTTTGTAGTTATCCCAATGTGGTGGGGCTCATTTTACTG
GATACGTCCTGCATCGCAACGGAAAATGGGCGCACAACATTATTGCAAAT
GCGCTTTCAAGCTACTCCGGCTATTTCCTTGGGAACAAACGGAATCCTCC
TCCGCTTTTGTAGACGAACAACCACATAAAAACCCACTACTCAGCGCTGG
ATTTCATCATTCCGCGTGCATTCCCAAAATGCTGGTATTTATTTCCCGCC
ACAATGCGTCGTTTTGATCTGAATGTTACCGTCCGCCCGCGGATCAACGC
ACAACAATCCCCACCCCCACACTCACTCCTGCAACCCGATCAGAACTCTC
TGTCTTCACGACCGAACAACTCCTGCCACAGGCCATCAGTACAAGTGGCG
TCGGCGCCGTCGGCGGCGGCACTGCTGCAGCGCCTAGTTCAGCGCTGGGC
ATTGGCGTGTGCTACTTCAGCAACGGAAGCGTTCTGCACGACTGGGCGGG
CGTTCTGTAGCGCTGCTGCTGCTGCTGCATCTGGTGATTGGATGTGGCCA
AATGAGGTCCACCGTGCGCAAGCGCTCCGATGGGAGCCATTCGTTGCGCT
AAATATCTCAGCAGAGAAGAACAAGACGATGGTGATGACGAGAACGACCA
CCTGAGGCAGTGGGTGGTAGAACAAATTAGGAAAAATTATTCAGTGCCGT
GGCGGAACGGTGCGGATTCTTCACCCCTCGTTTTTTTCACCGTAAAACCG
CCTTGTGTTGTTTTTGTTTCGCTTCGTGTCACAAGTCAAGAGTCCGACGA
AGCATGCGCTGCCCGACGATACTGGCTGTGCTCCGTGCGCTGCTTTCTTG
GCACAGTTTGTGTCCGTATGTTGTCGGGCCCGGTTGTGGGGTTTGTGCCA
TGTTTGTTTCGGAGAGATAACTTTGTGTCGGTGGGTGGGCCTCCCCATAG
ACTAAGCAGTTTCCAAGGTGAGCGGCGGATCTTCTACATAAGTAGGGCTG
TTTCTTCTGTGCTTTGTTTTCTCGGCTTTAAGTGGGTAGACAAACCTGTG
CCCATCAGGGTAAAACTGTGTCCCTATGTTGAGTAGTATTTCCTCAGGCA
GTTTATGTTGAATACTTTGTCCCCCTATCGTAAGAACGTAGTTGGTGTGA
GGAAACCTGGTGACGACAAACACCAGAGTTTGTGCTTTTTTAGTTCGCAT
GCGGGTATATCCAGCATTGCCAGTTGGTGTCGCTTCTCTTGGTGCCTCCT
TTGAAGCGAACTTTGTTGGTACTACTAAAATTACACGCGACTGAATACAA
CGACGAACCCTCGATGGAA
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Coding sequence (CDS) from alignment at C-linearis_contig8:2619858..2624376-

>mRNA_C-linearis_contig8.15691.1 ID=mRNA_C-linearis_contig8.15691.1|Name=mRNA_C-linearis_contig8.15691.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1050bp|location=Sequence derived from alignment at C-linearis_contig8:2619858..2624376- (Chordaria linearis ClinC8C monoicous)
ATGAGATGAGCAGCAGTAGTAGCACCACCCGGTTCAACACTGGGCCGTGG
TCGAACGAGGAGCACCAGAATTTCCTGCGCGGGGTTGCGGCGCACGGCTG
CGGCAACTGGACCGCCATCGGAGTGCTCGTGCGCACGCGAAACCCGCAGC
AGATCGAGGTCCACGCCGGCCAGCACTTCGCCCAGAGCGCGGAGGAGCAA
GGTCTTGCACGCACCGAGCAGCAGTAGTAGCACCACCCGGTTCAACACTG
GGCCGTGGTCGAACGAGGAGCACCAGAATTTCCTGCGCGGGGTTGCGGCG
CACGGCTGCGGCAACTGGACCGCCATCGGAGTGCTCGTGCGCACGCGAAA
CCCGCAGCAGATCGAGGTCCACGCCGGCCAGCACTTCGCCCAGAGCGCGG
AGGAGCAAGGTCTTGCACGCACCGAGAACTCTCTGTCTTCACGACCGAAC
AACTCCTGCCACAGGCCATCAGTACAAGTGGCGTCGGCGCCGTCGGCGGC
GGCACTGCTGCAGCGCCTAGTTCAGCGCTGGGCATTGGCGTGTGCTACTT
CAGCAACGGAAGCGTTCTGCACGACTGGGCGGGCGTTCTGTAGCGCTGCT
GCTGCTGCTGCATCTGGTGATTGGATGTGGCCAAATGAGGTCCACCGTGC
GCAAGCGCTCCGATGGGAGCCATTCGTTGCGCTAAATATCTCAGCAGAGA
AGAACAAGACGATGGTGATGACGAGAACGACCACCTGAAACTCTCTGTCT
TCACGACCGAACAACTCCTGCCACAGGCCATCAGTACAAGTGGCGTCGGC
GCCGTCGGCGGCGGCACTGCTGCAGCGCCTAGTTCAGCGCTGGGCATTGG
CGTGTGCTACTTCAGCAACGGAAGCGTTCTGCACGACTGGGCGGGCGTTC
TGTAGCGCTGCTGCTGCTGCTGCATCTGGTGATTGGATGTGGCCAAATGA
GGTCCACCGTGCGCAAGCGCTCCGATGGGAGCCATTCGTTGCGCTAAATA
TCTCAGCAGAGAAGAACAAGACGATGGTGATGACGAGAACGACCACCTGA
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