prot_C-linearis_contig8.15685.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig8.15685.1
Unique Nameprot_C-linearis_contig8.15685.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length369
Homology
BLAST of mRNA_C-linearis_contig8.15685.1 vs. uniprot
Match: D8LLV6_ECTSI (tRNA-intron lyase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLV6_ECTSI)

HSP 1 Score: 292 bits (747), Expect = 4.420e-93
Identity = 190/354 (53.67%), Postives = 214/354 (60.45%), Query Frame = 0
Query:    1 MVALRALLLGDIATLQFPASSCG--HRGDDELEGR-KGLGYMLKQSFGKVSEVHSHHGVEPPASSQQ--------PAAVTNSGLRCLQLSLEEAFYLAHVDECLALAV--RPLVFPTSGATALPTPPRRKRRLG---DEHPHLLH--HHPGHHQGGADVAADGSTARRQDFGAGVGFVGSGGSGRKDAEVLDADTAPLLSSEEAWQYCCDRRPDFPAMFAVYRHFRARRYTVHTGHKYGAHFVLYEGPPDDCHSRYCVHVARGGG-GDSWGHMKTVTRLMPASLICHLLAHIAPYFDVAKCLLVCGVSYRTSRQPSSP--EPPSSSPLDTASLAALEVAEVNALRFSRSRESDG 333
            MV LRALLLGD+A L FP   C   HR D   +G  KG+GY+L++SFGKVSE  S   + P  SS          PAA  +SGLRCLQLSLEEAFYLAHVDE LALAV    LV PT+   ALP             +E P LLH  H               S +  + FG G G                    PLLS+EEAW+YCC+RRPDFPAMFAVYRHFR R +TV TGHKYGAH+VLYEGPPD+CHSRYCVHV  GGG GDSW H+KT+TRLMP               DVAK LLVCGV+YR    P  P  E   S P+DT+SLAAL  AEV ALRFSRSR+SDG
Sbjct:    1 MVLLRALLLGDVAKLVFPTHRCEERHREDRRHDGDGKGIGYILERSFGKVSEACSQREL-PSISSXXXXXXXXXXPAATIDSGLRCLQLSLEEAFYLAHVDESLALAVPRANLVVPTA-PIALPXXXXXXXXXXXXXEEPPGLLHDWHXXXXXXXXXXXXXXXSLSGEEAFGCGFGXX-------XXXXXXXXXXXPLLSAEEAWRYCCNRRPDFPAMFAVYRHFRIRSFTVDTGHKYGAHYVLYEGPPDECHSRYCVHVTGGGGRGDSWSHVKTMTRLMP---------------DVAKSLLVCGVTYR----PQGPTLETGLSPPIDTSSLAALAAAEVTALRFSRSRDSDG 326          
BLAST of mRNA_C-linearis_contig8.15685.1 vs. uniprot
Match: A0A2R5LL66_9ACAR (tRNA-intron lyase (Fragment) n=1 Tax=Ornithodoros turicata TaxID=34597 RepID=A0A2R5LL66_9ACAR)

HSP 1 Score: 61.6 bits (148), Expect = 6.060e-7
Identity = 36/105 (34.29%), Postives = 50/105 (47.62%), Query Frame = 0
Query:  185 EAWQYCCDRRPDFPAMFAVYRHFRARRYTVHTGHKYGAHFVLYEGPPDDCHSRYCVHVARGGGGD----------SWGHMKTVTRLMPASLICHLLAHIAPYFDV 279
            E WQ  C  RP+FPA + VY HFR + + V TG KYG  ++LY+  P   H+ + V V    G +          SW  +  + RL   S    LL ++    DV
Sbjct:  177 ELWQRLCTLRPNFPARYTVYHHFRTKGWVVRTGSKYGTDYLLYKDGPPFYHATFSVLVRSTQGAELREVQDCRFRSWTSLSGLVRLNFNSTKTVLLCYVILPSDV 281          
BLAST of mRNA_C-linearis_contig8.15685.1 vs. uniprot
Match: A0A0W7TI51_9ARCH (Endonuclease n=1 Tax=Candidatus Methanomethylophilus sp. 1R26 TaxID=1769296 RepID=A0A0W7TI51_9ARCH)

HSP 1 Score: 58.5 bits (140), Expect = 8.480e-6
Identity = 31/93 (33.33%), Postives = 42/93 (45.16%), Query Frame = 0
Query:  168 KDAEVLDADTAPLLSSEEAWQYCCDRRPDFPAMFAVYRHFRARRYTVHTGHKYGAHFVLYEGPPDDCHSRYCVHVARGGGGDSWGHMKTVTRL 260
            +  EVL AD    +  +         + +F      Y   R+R   V TG KYG HF +YEG PD+CH+RY VH  +      W  +    RL
Sbjct:  237 RKGEVLSADDIKSIGRKS--------QNEFGLRLRAYEDLRSRGLIVKTGFKYGTHFRVYEGSPDECHARYLVHAFQDSKVAMWPEISRTVRL 321          
BLAST of mRNA_C-linearis_contig8.15685.1 vs. uniprot
Match: M4YIW8_THEXX (tRNA intron endonuclease n=1 Tax=Thermoplasmatales archaeon (strain BRNA1) TaxID=1054217 RepID=M4YIW8_THEXX)

HSP 1 Score: 58.2 bits (139), Expect = 9.110e-6
Identity = 27/65 (41.54%), Postives = 32/65 (49.23%), Query Frame = 0
Query:  196 DFPAMFAVYRHFRARRYTVHTGHKYGAHFVLYEGPPDDCHSRYCVHVARGGGGDSWGHMKTVTRL 260
            +F      Y   RAR   V TG KYG HF +YEG PD+CH+RY VH         W  +    RL
Sbjct:  258 EFDLRLKAYYDLRARGLVVKTGFKYGTHFRVYEGSPDECHARYLVHAVTASKIAMWPEISRTVRL 322          
BLAST of mRNA_C-linearis_contig8.15685.1 vs. uniprot
Match: A0A482UN53_9ARCH (tRNA_int_endo domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UN53_9ARCH)

HSP 1 Score: 57.8 bits (138), Expect = 1.360e-5
Identity = 27/74 (36.49%), Postives = 40/74 (54.05%), Query Frame = 0
Query:  169 DAEVLDADTAPLLSSEEAWQYCCDRRPDFPAMFAVYRHFRARRYTVHTGHKYGAHFVLYEGPPDDCHSRYCVHV 242
            D+   D  T   L++++ W   C R  +FPA +AVYRH+R   + V  G  +G  FVLY   P   H+ +C+ V
Sbjct:   69 DSAASDDGTEHALTADQLWSIFCARIANFPARYAVYRHYRTAGWVVRDGLAFGCDFVLYAKGPGWDHAPHCITV 142          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15685.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LLV6_ECTSI4.420e-9353.67tRNA-intron lyase n=1 Tax=Ectocarpus siliculosus T... [more]
A0A2R5LL66_9ACAR6.060e-734.29tRNA-intron lyase (Fragment) n=1 Tax=Ornithodoros ... [more]
A0A0W7TI51_9ARCH8.480e-633.33Endonuclease n=1 Tax=Candidatus Methanomethylophil... [more]
M4YIW8_THEXX9.110e-641.54tRNA intron endonuclease n=1 Tax=Thermoplasmatales... [more]
A0A482UN53_9ARCH1.360e-536.49tRNA_int_endo domain-containing protein (Fragment)... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011856tRNA endonuclease-like domain superfamilyGENE3D3.40.1350.10coord: 196..275
e-value: 4.3E-14
score: 54.4
IPR006677tRNA intron endonuclease, catalytic domain-likePFAMPF01974tRNA_int_endocoord: 199..257
e-value: 2.0E-13
score: 50.2
IPR006676tRNA-splicing endonucleasePANTHERPTHR21227TRNA-SPLICING ENDONUCLEASE SUBUNIT SEN2coord: 176..330
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..23
score: 0.467
IPR036167tRNA intron endonuclease, catalytic domain-like superfamilySUPERFAMILY53032tRNA-intron endonuclease catalytic domain-likecoord: 195..261

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig8contigC-linearis_contig8:2573116..2575423 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig8.15685.1mRNA_C-linearis_contig8.15685.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig8 2572515..2575501 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig8.15685.1 ID=prot_C-linearis_contig8.15685.1|Name=mRNA_C-linearis_contig8.15685.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=369bp
MVALRALLLGDIATLQFPASSCGHRGDDELEGRKGLGYMLKQSFGKVSEV
HSHHGVEPPASSQQPAAVTNSGLRCLQLSLEEAFYLAHVDECLALAVRPL
VFPTSGATALPTPPRRKRRLGDEHPHLLHHHPGHHQGGADVAADGSTARR
QDFGAGVGFVGSGGSGRKDAEVLDADTAPLLSSEEAWQYCCDRRPDFPAM
FAVYRHFRARRYTVHTGHKYGAHFVLYEGPPDDCHSRYCVHVARGGGGDS
WGHMKTVTRLMPASLICHLLAHIAPYFDVAKCLLVCGVSYRTSRQPSSPE
PPSSSPLDTASLAALEVAEVNALRFSRSRESDGEGGKSATTTLKVRQAAK
STSCVEKPAKRTGKKALA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011856tRNA_endonuc-like_dom_sf
IPR006677tRNA_intron_Endonuc_cat-like
IPR006676tRNA_splic
IPR036167tRNA_intron_Endo_cat-like_sf