prot_C-linearis_contig8.15671.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig8.15671.1
Unique Nameprot_C-linearis_contig8.15671.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length97
Homology
BLAST of mRNA_C-linearis_contig8.15671.1 vs. uniprot
Match: D8LI93_ECTSI (Similar to sodium channel, voltage-gated, type IX, alpha isoform 5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI93_ECTSI)

HSP 1 Score: 57.0 bits (136), Expect = 2.490e-7
Identity = 31/37 (83.78%), Postives = 34/37 (91.89%), Query Frame = 0
Query:    1 SLPILADLFFIILVLCGAFFTLNLLLAVLESNFSQDK 37
            S P+LADLFFI+LVL GAFFTLNLLLAVLE+NFSQ K
Sbjct:  149 SRPVLADLFFIVLVLWGAFFTLNLLLAVLENNFSQGK 185          
BLAST of mRNA_C-linearis_contig8.15671.1 vs. uniprot
Match: A0A6H5KPD7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPD7_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 2.500e-7
Identity = 42/89 (47.19%), Postives = 52/89 (58.43%), Query Frame = 0
Query:    1 SLPILADLFFIILVLCGAFFTLNLLLAVLESNFSQDKDSEKLQRGLAAEAAVAVAYEQAVNVNVGHDDVAGIGAAAEERAIAADQKIED 89
            S P+LADLFFI+LVL GAFFTLNLLLAVLE+NFSQ                           +   DDV G+    EE+AIAA++++ED
Sbjct:  448 SRPVLADLFFIVLVLWGAFFTLNLLLAVLENNFSQGXXXXXXXXXXXXXX-----XXXXXXADSSIDDVLGVSV--EEKAIAAEREVED 529          
BLAST of mRNA_C-linearis_contig8.15671.1 vs. uniprot
Match: A0A6H5JJ68_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ68_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 3.180e-7
Identity = 29/42 (69.05%), Postives = 37/42 (88.10%), Query Frame = 0
Query:    1 SLPILADLFFIILVLCGAFFTLNLLLAVLESNFSQDKDSEKL 42
            SLPIL D+FFIIL+L G+FFTLNLLLAVLE NF++ K+ +K+
Sbjct:  395 SLPILGDVFFIILILWGSFFTLNLLLAVLEGNFTKGKEDDKV 436          
BLAST of mRNA_C-linearis_contig8.15671.1 vs. uniprot
Match: D7FVE6_ECTSI (Voltage Gated Calcium/Sodium Channel subunit alpha n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVE6_ECTSI)

HSP 1 Score: 56.2 bits (134), Expect = 4.690e-7
Identity = 29/41 (70.73%), Postives = 36/41 (87.80%), Query Frame = 0
Query:    1 SLPILADLFFIILVLCGAFFTLNLLLAVLESNFSQDKDSEK 41
            SLPIL D+FFIIL+L G+FFTLNLLLAVLE NF++ K+ +K
Sbjct:  395 SLPILGDVFFIILILWGSFFTLNLLLAVLEGNFTKGKEDDK 435          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15671.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LI93_ECTSI2.490e-783.78Similar to sodium channel, voltage-gated, type IX,... [more]
A0A6H5KPD7_9PHAE2.500e-747.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJ68_9PHAE3.180e-769.05Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
D7FVE6_ECTSI4.690e-770.73Voltage Gated Calcium/Sodium Channel subunit alpha... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..5
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 6..29
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 30..97
NoneNo IPR availableTMHMMTMhelixcoord: 4..26

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig8contigC-linearis_contig8:2453596..2454170 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig8.15671.1mRNA_C-linearis_contig8.15671.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig8 2453594..2454170 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig8.15671.1 ID=prot_C-linearis_contig8.15671.1|Name=mRNA_C-linearis_contig8.15671.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=97bp
SLPILADLFFIILVLCGAFFTLNLLLAVLESNFSQDKDSEKLQRGLAAEA
AVAVAYEQAVNVNVGHDDVAGIGAAAEERAIAADQKIEDTSSDIAGK
back to top