mRNA_C-linearis_contig8.15671.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig8.15671.1
Unique NamemRNA_C-linearis_contig8.15671.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig8.15671.1 vs. uniprot
Match: D8LI93_ECTSI (Similar to sodium channel, voltage-gated, type IX, alpha isoform 5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI93_ECTSI)

HSP 1 Score: 57.0 bits (136), Expect = 2.490e-7
Identity = 31/37 (83.78%), Postives = 34/37 (91.89%), Query Frame = 1 
Query:    1 SLPILADLFFIILVLCGAFFTLNLLLAVLESNFSQDK 111
            S P+LADLFFI+LVL GAFFTLNLLLAVLE+NFSQ K
Sbjct:  149 SRPVLADLFFIVLVLWGAFFTLNLLLAVLENNFSQGK 185
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BLAST of mRNA_C-linearis_contig8.15671.1 vs. uniprot
Match: A0A6H5KPD7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPD7_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 2.500e-7
Identity = 42/89 (47.19%), Postives = 52/89 (58.43%), Query Frame = 1 
Query:    1 SLPILADLFFIILVLCGAFFTLNLLLAVLESNFSQDKDSEKLQRGLAAEAAVAVAYEQAVNVNVGHDDVAGIGAAAEERAIAADQKIED 267
            S P+LADLFFI+LVL GAFFTLNLLLAVLE+NFSQ                           +   DDV G+    EE+AIAA++++ED
Sbjct:  448 SRPVLADLFFIVLVLWGAFFTLNLLLAVLENNFSQGXXXXXXXXXXXXXX-----XXXXXXADSSIDDVLGVSV--EEKAIAAEREVED 529
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BLAST of mRNA_C-linearis_contig8.15671.1 vs. uniprot
Match: A0A6H5JJ68_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ68_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 3.180e-7
Identity = 29/42 (69.05%), Postives = 37/42 (88.10%), Query Frame = 1 
Query:    1 SLPILADLFFIILVLCGAFFTLNLLLAVLESNFSQDKDSEKL 126
            SLPIL D+FFIIL+L G+FFTLNLLLAVLE NF++ K+ +K+
Sbjct:  395 SLPILGDVFFIILILWGSFFTLNLLLAVLEGNFTKGKEDDKV 436
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BLAST of mRNA_C-linearis_contig8.15671.1 vs. uniprot
Match: D7FVE6_ECTSI (Voltage Gated Calcium/Sodium Channel subunit alpha n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVE6_ECTSI)

HSP 1 Score: 56.2 bits (134), Expect = 4.690e-7
Identity = 29/41 (70.73%), Postives = 36/41 (87.80%), Query Frame = 1 
Query:    1 SLPILADLFFIILVLCGAFFTLNLLLAVLESNFSQDKDSEK 123
            SLPIL D+FFIIL+L G+FFTLNLLLAVLE NF++ K+ +K
Sbjct:  395 SLPILGDVFFIILILWGSFFTLNLLLAVLEGNFTKGKEDDK 435
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15671.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LI93_ECTSI2.490e-783.78Similar to sodium channel, voltage-gated, type IX,... [more]
A0A6H5KPD7_9PHAE2.500e-747.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJ68_9PHAE3.180e-769.05Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
D7FVE6_ECTSI4.690e-770.73Voltage Gated Calcium/Sodium Channel subunit alpha... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig8contigC-linearis_contig8:2453594..2454170 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size293
Cds size291
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930502.5956795-CDS-C-linearis_contig8:2453595..24537661622930502.5956795-CDS-C-linearis_contig8:2453595..2453766Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2453596..2453766 -
1690881102.8195813-CDS-C-linearis_contig8:2453595..24537661690881102.8195813-CDS-C-linearis_contig8:2453595..2453766Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2453596..2453766 -
1622930502.6179545-CDS-C-linearis_contig8:2454050..24541701622930502.6179545-CDS-C-linearis_contig8:2454050..2454170Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2454051..2454170 -
1690881102.8320253-CDS-C-linearis_contig8:2454050..24541701690881102.8320253-CDS-C-linearis_contig8:2454050..2454170Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2454051..2454170 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig8.15671.1prot_C-linearis_contig8.15671.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig8 2453596..2454170 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig8.15671.1

>prot_C-linearis_contig8.15671.1 ID=prot_C-linearis_contig8.15671.1|Name=mRNA_C-linearis_contig8.15671.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=97bp
SLPILADLFFIILVLCGAFFTLNLLLAVLESNFSQDKDSEKLQRGLAAEA
AVAVAYEQAVNVNVGHDDVAGIGAAAEERAIAADQKIEDTSSDIAGK
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mRNA from alignment at C-linearis_contig8:2453594..2454170-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig8.15671.1 ID=mRNA_C-linearis_contig8.15671.1|Name=mRNA_C-linearis_contig8.15671.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=577bp|location=Sequence derived from alignment at C-linearis_contig8:2453594..2454170- (Chordaria linearis ClinC8C monoicous)
AGCCTGCCCATTCTCGCAGACTTGTTTTTCATCATCCTCGTCCTGTGTGG
AGCTTTCTTCACTCTTAATCTTCTCTTGGCGGTCTTGGAGAGTAACTTCA
GCCAGGACAAGGACAGCGAGGTGATCACACTGCCGGTTTTTGGCTTGGCG
CAAGGGGTGTTTTCGTGAGGGAAGGGCCGGCAAGTCGCAACAACCGTAAC
CTGCCCCCTTGGCACTAGACCAAGCGTGCGAGTTCAATCTGAAATTCCTG
CACGACGATCGTGGGCCGTCTCTCGCTACACCAACCTATGCCTCAGCCGC
ACCATTCTCCGCACGCGCTCCGCTCGCCTCTGAAAGCACGTGTACACGCG
CGTTTGTCCCCTCCCAACACCAACATCGACCAAAACGATCGCCAAATTCG
ACAGAAACTACAGAGAGGACTGGCGGCGGAGGCGGCGGTGGCGGTAGCGT
ACGAGCAGGCCGTCAACGTCAACGTCGGCCACGACGACGTGGCGGGAATA
GGCGCAGCTGCAGAGGAAAGAGCAATCGCTGCCGACCAGAAAATTGAAGA
CACCTCGTCTGACATTGCCGGGAAGGT
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Coding sequence (CDS) from alignment at C-linearis_contig8:2453594..2454170-

>mRNA_C-linearis_contig8.15671.1 ID=mRNA_C-linearis_contig8.15671.1|Name=mRNA_C-linearis_contig8.15671.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=582bp|location=Sequence derived from alignment at C-linearis_contig8:2453594..2454170- (Chordaria linearis ClinC8C monoicous)
AGCCTGCCCATTCTCGCAGACTTGTTTTTCATCATCCTCGTCCTGTGTGG
AGCTTTCTTCACTCTTAATCTTCTCTTGGCGGTCTTGGAGAGTAACTTCA
GCCAGGACAAGGACAGCGAGAGCCTGCCCATTCTCGCAGACTTGTTTTTC
ATCATCCTCGTCCTGTGTGGAGCTTTCTTCACTCTTAATCTTCTCTTGGC
GGTCTTGGAGAGTAACTTCAGCCAGGACAAGGACAGCGAGAAACTACAGA
GAGGACTGGCGGCGGAGGCGGCGGTGGCGGTAGCGTACGAGCAGGCCGTC
AACGTCAACGTCGGCCACGACGACGTGGCGGGAATAGGCGCAGCTGCAGA
GGAAAGAGCAATCGCTGCCGACCAGAAAATTGAAGACACCTCGTCTGACA
TTGCCGGGAAGAAACTACAGAGAGGACTGGCGGCGGAGGCGGCGGTGGCG
GTAGCGTACGAGCAGGCCGTCAACGTCAACGTCGGCCACGACGACGTGGC
GGGAATAGGCGCAGCTGCAGAGGAAAGAGCAATCGCTGCCGACCAGAAAA
TTGAAGACACCTCGTCTGACATTGCCGGGAAG
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