prot_C-linearis_contig8.15670.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig8.15670.1
Unique Nameprot_C-linearis_contig8.15670.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length175
Homology
BLAST of mRNA_C-linearis_contig8.15670.1 vs. uniprot
Match: D8LI93_ECTSI (Similar to sodium channel, voltage-gated, type IX, alpha isoform 5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI93_ECTSI)

HSP 1 Score: 262 bits (670), Expect = 4.940e-78
Identity = 126/177 (71.19%), Postives = 149/177 (84.18%), Query Frame = 0
Query:    2 CVAVSGGLWPDSAGCCSAWPSSAEEAPTSFEVCECLGLEWAETIPQQFNNVAVALLSLFEVSTT--WTSVTYAAVDSTSEDMQPIRDYALSRVWFFIMFMMVGAYLVLNLFVGVVVDNFKKMSARAE-GSLFATENQRFWTKTQLIMRRVRPTKFQQPPADPVGAWCFRLVRRTWFD 175
            C  ++GGLWPD+A CCSAWP+SAEEAPTS+EVCECLGL WAETIPQQF+NVAV+LL+LFE+STT  WTSVTYAAVD+T   MQPIRD+ ++RVW FI+FM++GAYLV+NLFVGV+VDNFKKM ARAE G L  TE+QR W KTQLIMRR+RP K  QPP   +G+ CFRL+   WFD
Sbjct:  860 CDVITGGLWPDAAACCSAWPTSAEEAPTSYEVCECLGLSWAETIPQQFDNVAVSLLTLFEISTTEAWTSVTYAAVDATGVGMQPIRDHVIARVWLFILFMLLGAYLVMNLFVGVIVDNFKKMKARAEEGGLLVTEHQRLWIKTQLIMRRLRPMKRPQPPPGRLGSSCFRLINLPWFD 1036          
BLAST of mRNA_C-linearis_contig8.15670.1 vs. uniprot
Match: A0A6H5KPD7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPD7_9PHAE)

HSP 1 Score: 262 bits (670), Expect = 5.600e-78
Identity = 126/177 (71.19%), Postives = 150/177 (84.75%), Query Frame = 0
Query:    2 CVAVSGGLWPDSAGCCSAWPSSAEEAPTSFEVCECLGLEWAETIPQQFNNVAVALLSLFEVSTT--WTSVTYAAVDSTSEDMQPIRDYALSRVWFFIMFMMVGAYLVLNLFVGVVVDNFKKMSARAE-GSLFATENQRFWTKTQLIMRRVRPTKFQQPPADPVGAWCFRLVRRTWFD 175
            C  ++GGLWPD+AGCCSAWP+SAEEAPTS+EVCECLGL WAETIPQQF+NVAV+LL+LFE+STT  WTSVTYAAVD++   MQPIRD+ ++RVW FI+FM++GAYLV+NLFVGV+VDNFKKM ARAE G L  T +QR W KTQLIMRR+RP K  QPP D +G+ CFRL+   WFD
Sbjct: 1339 CDVITGGLWPDAAGCCSAWPTSAEEAPTSYEVCECLGLSWAETIPQQFDNVAVSLLTLFEISTTEAWTSVTYAAVDASGVGMQPIRDHVMARVWLFILFMLLGAYLVMNLFVGVIVDNFKKMKARAEEGGLLVTGHQRLWIKTQLIMRRLRPMKRIQPPPDRLGSLCFRLINFPWFD 1515          
BLAST of mRNA_C-linearis_contig8.15670.1 vs. uniprot
Match: A0A6H5JIB7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIB7_9PHAE)

HSP 1 Score: 223 bits (568), Expect = 2.990e-64
Identity = 105/177 (59.32%), Postives = 134/177 (75.71%), Query Frame = 0
Query:    2 CVAVSGGLWPDSAGCCSAWPSSAEEAPTSFEVCECLGLEWAETIPQQFNNVAVALLSLFEVSTT--WTSVTYAAVDSTSEDMQPIRDYALSRVWFFIMFMMVGAYLVLNLFVGVVVDNFKKMSARAEGS-LFATENQRFWTKTQLIMRRVRPTKFQQPPADPVGAWCFRLVRRTWFD 175
            C ++S G WPDS GCC+ WPSSA   PTS++VCECLGL+W +T+PQQF+NVA ALL+ FE+STT  WTSV YAAVD+T  DMQPIRD  +  VWFF++FM++G+YLV+NLFVGV++DNF KM +RAEG  +  TE Q+ W KTQ +  R+RP K    P DPVG WC+++    WFD
Sbjct:  617 CGSISAG-WPDSGGCCTEWPSSASSVPTSYQVCECLGLDWDQTVPQQFDNVAQALLTFFEISTTEAWTSVMYAAVDATDVDMQPIRDNRVMIVWFFMLFMLIGSYLVMNLFVGVIIDNFNKMKSRAEGDGVLVTEEQQSWIKTQHMTHRLRPLKRVTLPGDPVGDWCYKVSHHKWFD 792          
BLAST of mRNA_C-linearis_contig8.15670.1 vs. uniprot
Match: D7FVE6_ECTSI (Voltage Gated Calcium/Sodium Channel subunit alpha n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVE6_ECTSI)

HSP 1 Score: 219 bits (559), Expect = 4.980e-63
Identity = 102/177 (57.63%), Postives = 134/177 (75.71%), Query Frame = 0
Query:    2 CVAVSGGLWPDSAGCCSAWPSSAEEAPTSFEVCECLGLEWAETIPQQFNNVAVALLSLFEVSTT--WTSVTYAAVDSTSEDMQPIRDYALSRVWFFIMFMMVGAYLVLNLFVGVVVDNFKKMSARAEGS-LFATENQRFWTKTQLIMRRVRPTKFQQPPADPVGAWCFRLVRRTWFD 175
            C +++ G WPDS GCC+ WPSSA   PTS+++CECLGL+W +T+PQQF+NVA ALL+ FE+STT  WTSV YAAVD+T  DMQPIRD  +  VWFF++FM++G+YLV+NLFVGV++DNF KM ++AEG  +  TE Q+ W KTQ +  R+RP K    P DPVG WC+++    WFD
Sbjct: 1115 CGSINAG-WPDSGGCCTEWPSSASSVPTSYQLCECLGLDWDQTVPQQFDNVAQALLTFFEISTTEAWTSVMYAAVDATDVDMQPIRDNRVMIVWFFMLFMLIGSYLVMNLFVGVIIDNFNKMKSKAEGDGVLVTEEQQSWIKTQHMTHRLRPLKRVTLPGDPVGNWCYKVSHHKWFD 1290          
BLAST of mRNA_C-linearis_contig8.15670.1 vs. uniprot
Match: A0A8K1CR88_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CR88_PYTOL)

HSP 1 Score: 136 bits (342), Expect = 7.510e-34
Identity = 68/149 (45.64%), Postives = 97/149 (65.10%), Query Frame = 0
Query:   29 TSFEVCECLGLEWAETIPQQFNNVAVALLSLFEVSTT--WTSVTYAAVDSTSEDMQPIRDYALSRVWFFIMFMMVGAYLVLNLFVGVVVDNFKKMSARAEGSLFATENQRFWTKTQLIMRRVRPTKFQQPPADPVGAWCFRLVRRTWFD 175
            TS E+CEC   +W   +P+ F+NV +A+L+ FE+STT  W  V  AA+DSTS DMQPIRD  L   +FFI+FMMVG++ V+NLFVG+++DNF  M A+  G +F TE+Q+ W + Q    RV P +  + P   +    F +V+R  F+
Sbjct: 1312 TSKEICECWNADWEPVLPENFDNVGMAMLTFFEISTTEGWADVMMAAMDSTSIDMQPIRDNTLIWGYFFILFMMVGSFFVVNLFVGIIIDNFNSMKAKLGGEIFLTEDQKKWIEAQKAASRVGPIRKLRRPNHHLRGLVFDIVKRRRFE 1460          
BLAST of mRNA_C-linearis_contig8.15670.1 vs. uniprot
Match: A0A7S1CSS8_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CSS8_9STRA)

HSP 1 Score: 132 bits (333), Expect = 1.140e-32
Identity = 65/143 (45.45%), Postives = 93/143 (65.03%), Query Frame = 0
Query:   28 PTSFEVCECLGLEWAETIPQQFNNVAVALLSLFEVSTT--WTSVTYAAVDSTSEDMQPIRDYALSRVWFFIMFMMVGAYLVLNLFVGVVVDNFKKMSARAEGSLFATENQRFWTKTQLIMRRVRPTKFQQPPADPVGAWCFRL 168
            PTS  VC   G +W E +PQ FNN+  A+ +LFE+STT  W  + YA VD+T  DMQPIRD       FF++FM+VG++ V+NLFVGVV+DNF  M  R   ++  T+ Q+ W KT+ IM +++P + ++ P   V  +C+RL
Sbjct:  363 PTSKVVCAYFGADWEEVVPQNFNNIMAAMGTLFEMSTTEGWVDIMYAGVDATDLDMQPIRDIGFGWTLFFMVFMVVGSFFVMNLFVGVVIDNFNTMKERLGDNVLLTDAQKEWVKTREIMLKIKPMRKKEVPHGQVREFCYRL 505          
BLAST of mRNA_C-linearis_contig8.15670.1 vs. uniprot
Match: A0A421FNC7_9STRA (Uncharacterized protein n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421FNC7_9STRA)

HSP 1 Score: 132 bits (332), Expect = 1.550e-32
Identity = 66/149 (44.30%), Postives = 91/149 (61.07%), Query Frame = 0
Query:   29 TSFEVCECLGLEWAETIPQQFNNVAVALLSLFEVSTT--WTSVTYAAVDSTSEDMQPIRDYALSRVWFFIMFMMVGAYLVLNLFVGVVVDNFKKMSARAEGSLFATENQRFWTKTQLIMRRVRPTKFQQPPADPVGAWCFRLVRRTWFD 175
            TS  VC C G +W   +PQ FNNV +A+L+ FE+STT  W SV  AA+DS+   MQPIRD  ++   FF+ FMMVG++ V+NLFVGV++DNF +M A   G    T  Q+ W + Q    RV P +  +PP  P+  + F  V+   F+
Sbjct:  372 TSQYVCGCWGADWEPVVPQNFNNVGMAMLTFFEISTTEGWASVMVAAIDSSDIGMQPIRDNNMNWALFFVAFMMVGSFFVVNLFVGVIIDNFNRMKAALGGDFMLTPEQKKWIEVQKAASRVGPVRIMKPPQHPLRRFLFYAVKAKRFE 520          
BLAST of mRNA_C-linearis_contig8.15670.1 vs. uniprot
Match: F0WCG7_9STRA (Similar to sodium channel putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WCG7_9STRA)

HSP 1 Score: 129 bits (325), Expect = 1.440e-31
Identity = 61/149 (40.94%), Postives = 90/149 (60.40%), Query Frame = 0
Query:   29 TSFEVCECLGLEWAETIPQQFNNVAVALLSLFEVSTT--WTSVTYAAVDSTSEDMQPIRDYALSRVWFFIMFMMVGAYLVLNLFVGVVVDNFKKMSARAEGSLFATENQRFWTKTQLIMRRVRPTKFQQPPADPVGAWCFRLVRRTWFD 175
            TS  +CEC G  W   IP  FNN+  A+L+ FE+STT  W +V   A+D+T  DMQPIRD+ +   +FF++F +VG++ V+NLFVGV++DNF +M A   G    T  Q+ W + Q    R+ P +  + P +    W   +VR +WF+
Sbjct: 1201 TSRYICECWGASWEPPIPWNFNNIGWAMLTFFELSTTEGWVTVMTQAIDATDIDMQPIRDHQMKWAYFFVIFNLVGSFFVVNLFVGVIIDNFNRMKAALGGDFMLTPEQKKWIEAQKAALRIGPVRLVKVPKNKYRKWIHTVVRASWFE 1349          
BLAST of mRNA_C-linearis_contig8.15670.1 vs. uniprot
Match: A0A6A3FY78_9STRA (Sodium channel protein type 5 subunit alpha n=6 Tax=Phytophthora TaxID=4783 RepID=A0A6A3FY78_9STRA)

HSP 1 Score: 128 bits (321), Expect = 4.950e-31
Identity = 67/168 (39.88%), Postives = 93/168 (55.36%), Query Frame = 0
Query:   10 WPDSAGCCSAWPSSAEEAPTSFEVCECLGLEWAETIPQQFNNVAVALLSLFEVSTT--WTSVTYAAVDSTSEDMQPIRDYALSRVWFFIMFMMVGAYLVLNLFVGVVVDNFKKMSARAEGSLFATENQRFWTKTQLIMRRVRPTKFQQPPADPVGAWCFRLVRRTWFD 175
            W +   C + +P       TS  VCEC G +W   +PQ FNNV  A+L+ FE+STT  W  V  AA+DS    MQPIRD  +    FF++F+MVG++ V+NLF+GV++DNF +M +   G    T  Q+ W + Q    RV P +  +PP        F LVR   F+
Sbjct: 1121 WFNGTTCETTFPYMTSSNLTSEYVCECWGADWGPVLPQNFNNVGAAMLTFFEISTTEGWADVMMAAIDSNGIGMQPIRDNNMLWALFFVLFIMVGSFFVVNLFIGVIIDNFNRMKSALGGDFMLTPEQKKWVEAQKAASRVGPVRVLKPPKQMWRRHLFVLVRTPRFE 1288          
BLAST of mRNA_C-linearis_contig8.15670.1 vs. uniprot
Match: W2QUR8_PHYPN (Uncharacterized protein n=12 Tax=Phytophthora TaxID=4783 RepID=W2QUR8_PHYPN)

HSP 1 Score: 127 bits (318), Expect = 1.250e-30
Identity = 64/149 (42.95%), Postives = 88/149 (59.06%), Query Frame = 0
Query:   29 TSFEVCECLGLEWAETIPQQFNNVAVALLSLFEVSTT--WTSVTYAAVDSTSEDMQPIRDYALSRVWFFIMFMMVGAYLVLNLFVGVVVDNFKKMSARAEGSLFATENQRFWTKTQLIMRRVRPTKFQQPPADPVGAWCFRLVRRTWFD 175
            TS  VCEC G EW   +PQ F+NV  A+L+ FE+STT  W  V  AA+DS    MQP+RD  +    FF++F+MVG++ V+NLFVGV++DNF +M A   G    T  Q+ W + Q    RV P +  +PP   +    F LV+   F+
Sbjct: 1142 TSEYVCECWGAEWGHVLPQNFDNVGAAMLTFFEISTTEGWADVMMAAIDSNGIGMQPVRDNNMIWALFFVLFIMVGSFFVVNLFVGVIIDNFNRMKAALGGDFMLTPEQKKWIEAQKAASRVGPVRILKPPRQFIRRQLFFLVKMQRFE 1290          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15670.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LI93_ECTSI4.940e-7871.19Similar to sodium channel, voltage-gated, type IX,... [more]
A0A6H5KPD7_9PHAE5.600e-7871.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JIB7_9PHAE2.990e-6459.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FVE6_ECTSI4.980e-6357.63Voltage Gated Calcium/Sodium Channel subunit alpha... [more]
A0A8K1CR88_PYTOL7.510e-3445.64Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S1CSS8_9STRA1.140e-3245.45Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A421FNC7_9STRA1.550e-3244.30Uncharacterized protein n=4 Tax=Phytophthora kerno... [more]
F0WCG7_9STRA1.440e-3140.94Similar to sodium channel putative n=1 Tax=Albugo ... [more]
A0A6A3FY78_9STRA4.950e-3139.88Sodium channel protein type 5 subunit alpha n=6 Ta... [more]
W2QUR8_PHYPN1.250e-3042.95Uncharacterized protein n=12 Tax=Phytophthora TaxI... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.287.70coord: 32..118
e-value: 1.0E-13
score: 53.3
NoneNo IPR availablePANTHERPTHR10037:SF62SODIUM CHANNEL PROTEIN 60Ecoord: 33..175
NoneNo IPR availablePANTHERPTHR10037VOLTAGE-GATED CATION CHANNEL CALCIUM AND SODIUMcoord: 33..175
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 116..175
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 92..115
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..91
NoneNo IPR availableTMHMMTMhelixcoord: 93..115
IPR005821Ion transport domainPFAMPF00520Ion_transcoord: 47..125
e-value: 1.2E-11
score: 44.4

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig8contigC-linearis_contig8:2448045..2449613 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig8.15670.1mRNA_C-linearis_contig8.15670.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig8 2448045..2449613 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig8.15670.1 ID=prot_C-linearis_contig8.15670.1|Name=mRNA_C-linearis_contig8.15670.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=175bp
ECVAVSGGLWPDSAGCCSAWPSSAEEAPTSFEVCECLGLEWAETIPQQFN
NVAVALLSLFEVSTTWTSVTYAAVDSTSEDMQPIRDYALSRVWFFIMFMM
VGAYLVLNLFVGVVVDNFKKMSARAEGSLFATENQRFWTKTQLIMRRVRP
TKFQQPPADPVGAWCFRLVRRTWFD
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005821Ion_trans_dom