mRNA_C-linearis_contig8.15670.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig8.15670.1 vs. uniprot
Match: D8LI93_ECTSI (Similar to sodium channel, voltage-gated, type IX, alpha isoform 5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI93_ECTSI) HSP 1 Score: 262 bits (670), Expect = 4.940e-78 Identity = 126/177 (71.19%), Postives = 149/177 (84.18%), Query Frame = 1
Query: 4 CVAVSGGLWPDSAGCCSAWPSSAEEAPTSFEVCECLGLEWAETIPQQFNNVAVALLSLFEVSTT--WTSVTYAAVDSTSEDMQPIRDYALSRVWFFIMFMMVGAYLVLNLFVGVVVDNFKKMSARAE-GSLFATENQRFWTKTQLIMRRVRPTKFQQPPADPVGAWCFRLVRRTWFD 525
C ++GGLWPD+A CCSAWP+SAEEAPTS+EVCECLGL WAETIPQQF+NVAV+LL+LFE+STT WTSVTYAAVD+T MQPIRD+ ++RVW FI+FM++GAYLV+NLFVGV+VDNFKKM ARAE G L TE+QR W KTQLIMRR+RP K QPP +G+ CFRL+ WFD
Sbjct: 860 CDVITGGLWPDAAACCSAWPTSAEEAPTSYEVCECLGLSWAETIPQQFDNVAVSLLTLFEISTTEAWTSVTYAAVDATGVGMQPIRDHVIARVWLFILFMLLGAYLVMNLFVGVIVDNFKKMKARAEEGGLLVTEHQRLWIKTQLIMRRLRPMKRPQPPPGRLGSSCFRLINLPWFD 1036
BLAST of mRNA_C-linearis_contig8.15670.1 vs. uniprot
Match: A0A6H5KPD7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPD7_9PHAE) HSP 1 Score: 262 bits (670), Expect = 5.600e-78 Identity = 126/177 (71.19%), Postives = 150/177 (84.75%), Query Frame = 1
Query: 4 CVAVSGGLWPDSAGCCSAWPSSAEEAPTSFEVCECLGLEWAETIPQQFNNVAVALLSLFEVSTT--WTSVTYAAVDSTSEDMQPIRDYALSRVWFFIMFMMVGAYLVLNLFVGVVVDNFKKMSARAE-GSLFATENQRFWTKTQLIMRRVRPTKFQQPPADPVGAWCFRLVRRTWFD 525
C ++GGLWPD+AGCCSAWP+SAEEAPTS+EVCECLGL WAETIPQQF+NVAV+LL+LFE+STT WTSVTYAAVD++ MQPIRD+ ++RVW FI+FM++GAYLV+NLFVGV+VDNFKKM ARAE G L T +QR W KTQLIMRR+RP K QPP D +G+ CFRL+ WFD
Sbjct: 1339 CDVITGGLWPDAAGCCSAWPTSAEEAPTSYEVCECLGLSWAETIPQQFDNVAVSLLTLFEISTTEAWTSVTYAAVDASGVGMQPIRDHVMARVWLFILFMLLGAYLVMNLFVGVIVDNFKKMKARAEEGGLLVTGHQRLWIKTQLIMRRLRPMKRIQPPPDRLGSLCFRLINFPWFD 1515
BLAST of mRNA_C-linearis_contig8.15670.1 vs. uniprot
Match: A0A6H5JIB7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIB7_9PHAE) HSP 1 Score: 223 bits (568), Expect = 2.990e-64 Identity = 105/177 (59.32%), Postives = 134/177 (75.71%), Query Frame = 1
Query: 4 CVAVSGGLWPDSAGCCSAWPSSAEEAPTSFEVCECLGLEWAETIPQQFNNVAVALLSLFEVSTT--WTSVTYAAVDSTSEDMQPIRDYALSRVWFFIMFMMVGAYLVLNLFVGVVVDNFKKMSARAEGS-LFATENQRFWTKTQLIMRRVRPTKFQQPPADPVGAWCFRLVRRTWFD 525
C ++S G WPDS GCC+ WPSSA PTS++VCECLGL+W +T+PQQF+NVA ALL+ FE+STT WTSV YAAVD+T DMQPIRD + VWFF++FM++G+YLV+NLFVGV++DNF KM +RAEG + TE Q+ W KTQ + R+RP K P DPVG WC+++ WFD
Sbjct: 617 CGSISAG-WPDSGGCCTEWPSSASSVPTSYQVCECLGLDWDQTVPQQFDNVAQALLTFFEISTTEAWTSVMYAAVDATDVDMQPIRDNRVMIVWFFMLFMLIGSYLVMNLFVGVIIDNFNKMKSRAEGDGVLVTEEQQSWIKTQHMTHRLRPLKRVTLPGDPVGDWCYKVSHHKWFD 792
BLAST of mRNA_C-linearis_contig8.15670.1 vs. uniprot
Match: D7FVE6_ECTSI (Voltage Gated Calcium/Sodium Channel subunit alpha n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVE6_ECTSI) HSP 1 Score: 219 bits (559), Expect = 4.980e-63 Identity = 102/177 (57.63%), Postives = 134/177 (75.71%), Query Frame = 1
Query: 4 CVAVSGGLWPDSAGCCSAWPSSAEEAPTSFEVCECLGLEWAETIPQQFNNVAVALLSLFEVSTT--WTSVTYAAVDSTSEDMQPIRDYALSRVWFFIMFMMVGAYLVLNLFVGVVVDNFKKMSARAEGS-LFATENQRFWTKTQLIMRRVRPTKFQQPPADPVGAWCFRLVRRTWFD 525
C +++ G WPDS GCC+ WPSSA PTS+++CECLGL+W +T+PQQF+NVA ALL+ FE+STT WTSV YAAVD+T DMQPIRD + VWFF++FM++G+YLV+NLFVGV++DNF KM ++AEG + TE Q+ W KTQ + R+RP K P DPVG WC+++ WFD
Sbjct: 1115 CGSINAG-WPDSGGCCTEWPSSASSVPTSYQLCECLGLDWDQTVPQQFDNVAQALLTFFEISTTEAWTSVMYAAVDATDVDMQPIRDNRVMIVWFFMLFMLIGSYLVMNLFVGVIIDNFNKMKSKAEGDGVLVTEEQQSWIKTQHMTHRLRPLKRVTLPGDPVGNWCYKVSHHKWFD 1290
BLAST of mRNA_C-linearis_contig8.15670.1 vs. uniprot
Match: A0A8K1CR88_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CR88_PYTOL) HSP 1 Score: 136 bits (342), Expect = 7.510e-34 Identity = 68/149 (45.64%), Postives = 97/149 (65.10%), Query Frame = 1
Query: 85 TSFEVCECLGLEWAETIPQQFNNVAVALLSLFEVSTT--WTSVTYAAVDSTSEDMQPIRDYALSRVWFFIMFMMVGAYLVLNLFVGVVVDNFKKMSARAEGSLFATENQRFWTKTQLIMRRVRPTKFQQPPADPVGAWCFRLVRRTWFD 525
TS E+CEC +W +P+ F+NV +A+L+ FE+STT W V AA+DSTS DMQPIRD L +FFI+FMMVG++ V+NLFVG+++DNF M A+ G +F TE+Q+ W + Q RV P + + P + F +V+R F+
Sbjct: 1312 TSKEICECWNADWEPVLPENFDNVGMAMLTFFEISTTEGWADVMMAAMDSTSIDMQPIRDNTLIWGYFFILFMMVGSFFVVNLFVGIIIDNFNSMKAKLGGEIFLTEDQKKWIEAQKAASRVGPIRKLRRPNHHLRGLVFDIVKRRRFE 1460
BLAST of mRNA_C-linearis_contig8.15670.1 vs. uniprot
Match: A0A7S1CSS8_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CSS8_9STRA) HSP 1 Score: 132 bits (333), Expect = 1.140e-32 Identity = 65/143 (45.45%), Postives = 93/143 (65.03%), Query Frame = 1
Query: 82 PTSFEVCECLGLEWAETIPQQFNNVAVALLSLFEVSTT--WTSVTYAAVDSTSEDMQPIRDYALSRVWFFIMFMMVGAYLVLNLFVGVVVDNFKKMSARAEGSLFATENQRFWTKTQLIMRRVRPTKFQQPPADPVGAWCFRL 504
PTS VC G +W E +PQ FNN+ A+ +LFE+STT W + YA VD+T DMQPIRD FF++FM+VG++ V+NLFVGVV+DNF M R ++ T+ Q+ W KT+ IM +++P + ++ P V +C+RL
Sbjct: 363 PTSKVVCAYFGADWEEVVPQNFNNIMAAMGTLFEMSTTEGWVDIMYAGVDATDLDMQPIRDIGFGWTLFFMVFMVVGSFFVMNLFVGVVIDNFNTMKERLGDNVLLTDAQKEWVKTREIMLKIKPMRKKEVPHGQVREFCYRL 505
BLAST of mRNA_C-linearis_contig8.15670.1 vs. uniprot
Match: A0A421FNC7_9STRA (Uncharacterized protein n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421FNC7_9STRA) HSP 1 Score: 132 bits (332), Expect = 1.550e-32 Identity = 66/149 (44.30%), Postives = 91/149 (61.07%), Query Frame = 1
Query: 85 TSFEVCECLGLEWAETIPQQFNNVAVALLSLFEVSTT--WTSVTYAAVDSTSEDMQPIRDYALSRVWFFIMFMMVGAYLVLNLFVGVVVDNFKKMSARAEGSLFATENQRFWTKTQLIMRRVRPTKFQQPPADPVGAWCFRLVRRTWFD 525
TS VC C G +W +PQ FNNV +A+L+ FE+STT W SV AA+DS+ MQPIRD ++ FF+ FMMVG++ V+NLFVGV++DNF +M A G T Q+ W + Q RV P + +PP P+ + F V+ F+
Sbjct: 372 TSQYVCGCWGADWEPVVPQNFNNVGMAMLTFFEISTTEGWASVMVAAIDSSDIGMQPIRDNNMNWALFFVAFMMVGSFFVVNLFVGVIIDNFNRMKAALGGDFMLTPEQKKWIEVQKAASRVGPVRIMKPPQHPLRRFLFYAVKAKRFE 520
BLAST of mRNA_C-linearis_contig8.15670.1 vs. uniprot
Match: F0WCG7_9STRA (Similar to sodium channel putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WCG7_9STRA) HSP 1 Score: 129 bits (325), Expect = 1.440e-31 Identity = 61/149 (40.94%), Postives = 90/149 (60.40%), Query Frame = 1
Query: 85 TSFEVCECLGLEWAETIPQQFNNVAVALLSLFEVSTT--WTSVTYAAVDSTSEDMQPIRDYALSRVWFFIMFMMVGAYLVLNLFVGVVVDNFKKMSARAEGSLFATENQRFWTKTQLIMRRVRPTKFQQPPADPVGAWCFRLVRRTWFD 525
TS +CEC G W IP FNN+ A+L+ FE+STT W +V A+D+T DMQPIRD+ + +FF++F +VG++ V+NLFVGV++DNF +M A G T Q+ W + Q R+ P + + P + W +VR +WF+
Sbjct: 1201 TSRYICECWGASWEPPIPWNFNNIGWAMLTFFELSTTEGWVTVMTQAIDATDIDMQPIRDHQMKWAYFFVIFNLVGSFFVVNLFVGVIIDNFNRMKAALGGDFMLTPEQKKWIEAQKAALRIGPVRLVKVPKNKYRKWIHTVVRASWFE 1349
BLAST of mRNA_C-linearis_contig8.15670.1 vs. uniprot
Match: A0A6A3FY78_9STRA (Sodium channel protein type 5 subunit alpha n=6 Tax=Phytophthora TaxID=4783 RepID=A0A6A3FY78_9STRA) HSP 1 Score: 128 bits (321), Expect = 4.950e-31 Identity = 67/168 (39.88%), Postives = 93/168 (55.36%), Query Frame = 1
Query: 28 WPDSAGCCSAWPSSAEEAPTSFEVCECLGLEWAETIPQQFNNVAVALLSLFEVSTT--WTSVTYAAVDSTSEDMQPIRDYALSRVWFFIMFMMVGAYLVLNLFVGVVVDNFKKMSARAEGSLFATENQRFWTKTQLIMRRVRPTKFQQPPADPVGAWCFRLVRRTWFD 525
W + C + +P TS VCEC G +W +PQ FNNV A+L+ FE+STT W V AA+DS MQPIRD + FF++F+MVG++ V+NLF+GV++DNF +M + G T Q+ W + Q RV P + +PP F LVR F+
Sbjct: 1121 WFNGTTCETTFPYMTSSNLTSEYVCECWGADWGPVLPQNFNNVGAAMLTFFEISTTEGWADVMMAAIDSNGIGMQPIRDNNMLWALFFVLFIMVGSFFVVNLFIGVIIDNFNRMKSALGGDFMLTPEQKKWVEAQKAASRVGPVRVLKPPKQMWRRHLFVLVRTPRFE 1288
BLAST of mRNA_C-linearis_contig8.15670.1 vs. uniprot
Match: W2QUR8_PHYPN (Uncharacterized protein n=12 Tax=Phytophthora TaxID=4783 RepID=W2QUR8_PHYPN) HSP 1 Score: 127 bits (318), Expect = 1.250e-30 Identity = 64/149 (42.95%), Postives = 88/149 (59.06%), Query Frame = 1
Query: 85 TSFEVCECLGLEWAETIPQQFNNVAVALLSLFEVSTT--WTSVTYAAVDSTSEDMQPIRDYALSRVWFFIMFMMVGAYLVLNLFVGVVVDNFKKMSARAEGSLFATENQRFWTKTQLIMRRVRPTKFQQPPADPVGAWCFRLVRRTWFD 525
TS VCEC G EW +PQ F+NV A+L+ FE+STT W V AA+DS MQP+RD + FF++F+MVG++ V+NLFVGV++DNF +M A G T Q+ W + Q RV P + +PP + F LV+ F+
Sbjct: 1142 TSEYVCECWGAEWGHVLPQNFDNVGAAMLTFFEISTTEGWADVMMAAIDSNGIGMQPVRDNNMIWALFFVLFIMVGSFFVVNLFVGVIIDNFNRMKAALGGDFMLTPEQKKWIEAQKAASRVGPVRILKPPRQFIRRQLFFLVKMQRFE 1290 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15670.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig8.15670.1 >prot_C-linearis_contig8.15670.1 ID=prot_C-linearis_contig8.15670.1|Name=mRNA_C-linearis_contig8.15670.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=175bp ECVAVSGGLWPDSAGCCSAWPSSAEEAPTSFEVCECLGLEWAETIPQQFNback to top mRNA from alignment at C-linearis_contig8:2448045..2449613- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig8.15670.1 ID=mRNA_C-linearis_contig8.15670.1|Name=mRNA_C-linearis_contig8.15670.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1569bp|location=Sequence derived from alignment at C-linearis_contig8:2448045..2449613- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig8:2448045..2449613- >mRNA_C-linearis_contig8.15670.1 ID=mRNA_C-linearis_contig8.15670.1|Name=mRNA_C-linearis_contig8.15670.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1050bp|location=Sequence derived from alignment at C-linearis_contig8:2448045..2449613- (Chordaria linearis ClinC8C monoicous)back to top |