prot_C-linearis_contig8.15666.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig8.15666.1
Unique Nameprot_C-linearis_contig8.15666.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length62
Homology
BLAST of mRNA_C-linearis_contig8.15666.1 vs. uniprot
Match: D8LI93_ECTSI (Similar to sodium channel, voltage-gated, type IX, alpha isoform 5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI93_ECTSI)

HSP 1 Score: 124 bits (310), Expect = 1.730e-31
Identity = 47/62 (75.81%), Postives = 59/62 (95.16%), Query Frame = 0
Query:    1 WSQSASPWSTPRECYWPLDTEDTRLCAFDSSSGDHKCDHDPVYMNDTDFRWCGSDYDALGNR 62
            W+QS+SPWSTP++C+WPLDT+DTRLCAFD S G+H+C+HDP Y+N++DFRWCGSDYDALGNR
Sbjct:   23 WTQSSSPWSTPQDCWWPLDTDDTRLCAFDGSPGNHQCEHDPAYLNESDFRWCGSDYDALGNR 84          
BLAST of mRNA_C-linearis_contig8.15666.1 vs. uniprot
Match: A0A6H5KPD7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPD7_9PHAE)

HSP 1 Score: 124 bits (310), Expect = 1.730e-31
Identity = 47/62 (75.81%), Postives = 59/62 (95.16%), Query Frame = 0
Query:    1 WSQSASPWSTPRECYWPLDTEDTRLCAFDSSSGDHKCDHDPVYMNDTDFRWCGSDYDALGNR 62
            W+QS+SPWSTP++C+WPLDT+DTRLCAFD S G+H+C+HDP Y+N++DFRWCGSDYDALGNR
Sbjct:  270 WTQSSSPWSTPQDCWWPLDTDDTRLCAFDDSPGNHQCEHDPAYLNESDFRWCGSDYDALGNR 331          
BLAST of mRNA_C-linearis_contig8.15666.1 vs. uniprot
Match: A0A6H5JJ68_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ68_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 7.970e-26
Identity = 42/61 (68.85%), Postives = 52/61 (85.25%), Query Frame = 0
Query:    1 WSQSASPWSTPRECYWPLDTEDTRLCAFDSSSGDHKCDHDPVYMNDTDFRWCGSDYDALGN 61
            W+QS SPW+TPREC+WP+D+ED RLC  +S SG HKC+HD  YMN ++FRWCGS+YDALGN
Sbjct:  270 WTQSTSPWATPRECWWPIDSEDERLCTSNSGSGKHKCEHDERYMNLSEFRWCGSNYDALGN 330          
BLAST of mRNA_C-linearis_contig8.15666.1 vs. uniprot
Match: D7FVE6_ECTSI (Voltage Gated Calcium/Sodium Channel subunit alpha n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVE6_ECTSI)

HSP 1 Score: 105 bits (261), Expect = 7.210e-25
Identity = 41/61 (67.21%), Postives = 52/61 (85.25%), Query Frame = 0
Query:    1 WSQSASPWSTPRECYWPLDTEDTRLCAFDSSSGDHKCDHDPVYMNDTDFRWCGSDYDALGN 61
            W+QS SPW+TPREC+WP+D+E+ RLC  +S SG HKC+HD  YMN ++FRWCGS+YDALGN
Sbjct:  270 WTQSTSPWATPRECWWPIDSENERLCTSNSGSGKHKCEHDDRYMNLSEFRWCGSNYDALGN 330          
BLAST of mRNA_C-linearis_contig8.15666.1 vs. uniprot
Match: A0A812YMS5_9DINO (SCN4A protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812YMS5_9DINO)

HSP 1 Score: 67.8 bits (164), Expect = 9.530e-12
Identity = 29/61 (47.54%), Postives = 37/61 (60.66%), Query Frame = 0
Query:    1 WSQSASPWSTPRECYWPLDTEDTRLCAFDSSSGDHKCDHDPVYMNDTDFRWCGSDYDALGN 61
            W++ +SPWSTP+ C+WP+D ED   C     +G H+C       N    RWCGSDYD LGN
Sbjct:  168 WTKDSSPWSTPQPCFWPVDPEDESFCTV-GEAGLHRC------PNAAQARWCGSDYDFLGN 221          
BLAST of mRNA_C-linearis_contig8.15666.1 vs. uniprot
Match: A0A2D4C0A0_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C0A0_PYTIN)

HSP 1 Score: 54.7 bits (130), Expect = 4.050e-7
Identity = 23/60 (38.33%), Postives = 34/60 (56.67%), Query Frame = 0
Query:    1 WSQSASPWSTPRECYWPLDTEDTRLCAFDSSSGDHKCDHDPVYMNDTDFRWCGSDYDALG 60
            +++  SPW   ++C+WP+DT D RLC+  +SSG H C            R CG+D+D  G
Sbjct:  275 YTKETSPWFHAQDCFWPIDTNDLRLCSVAASSGQHLC---------PSKRTCGADFDTYG 325          
BLAST of mRNA_C-linearis_contig8.15666.1 vs. uniprot
Match: W2Q9N8_PHYPN (Uncharacterized protein n=10 Tax=Phytophthora TaxID=4783 RepID=W2Q9N8_PHYPN)

HSP 1 Score: 54.3 bits (129), Expect = 5.540e-7
Identity = 23/59 (38.98%), Postives = 34/59 (57.63%), Query Frame = 0
Query:    3 QSASPWSTPRECYWPLDTEDTRLCAFDSSSGDHKCDHDPVYMNDTDFRWCGSDYDALGN 61
            +  SPW T + C+WP++ +DT+LCA  S SG+H+C            + CG +YD  GN
Sbjct:  319 KETSPWYTAQPCFWPVNPDDTQLCARPSYSGNHQC---------VSGQTCGGNYDVFGN 368          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15666.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D8LI93_ECTSI1.730e-3175.81Similar to sodium channel, voltage-gated, type IX,... [more]
A0A6H5KPD7_9PHAE1.730e-3175.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJ68_9PHAE7.970e-2668.85Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
D7FVE6_ECTSI7.210e-2567.21Voltage Gated Calcium/Sodium Channel subunit alpha... [more]
A0A812YMS5_9DINO9.530e-1247.54SCN4A protein n=1 Tax=Symbiodinium sp. KB8 TaxID=2... [more]
A0A2D4C0A0_PYTIN4.050e-738.33Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
W2Q9N8_PHYPN5.540e-738.98Uncharacterized protein n=10 Tax=Phytophthora TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig8contigC-linearis_contig8:2427862..2428047 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig8.15666.1mRNA_C-linearis_contig8.15666.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig8 2427862..2428048 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig8.15666.1 ID=prot_C-linearis_contig8.15666.1|Name=mRNA_C-linearis_contig8.15666.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=62bp
WSQSASPWSTPRECYWPLDTEDTRLCAFDSSSGDHKCDHDPVYMNDTDFR
WCGSDYDALGNR
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