mRNA_C-linearis_contig8.15666.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig8.15666.1
Unique NamemRNA_C-linearis_contig8.15666.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig8.15666.1 vs. uniprot
Match: D8LI93_ECTSI (Similar to sodium channel, voltage-gated, type IX, alpha isoform 5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI93_ECTSI)

HSP 1 Score: 124 bits (310), Expect = 1.730e-31
Identity = 47/62 (75.81%), Postives = 59/62 (95.16%), Query Frame = 1 
Query:    1 WSQSASPWSTPRECYWPLDTEDTRLCAFDSSSGDHKCDHDPVYMNDTDFRWCGSDYDALGNR 186
            W+QS+SPWSTP++C+WPLDT+DTRLCAFD S G+H+C+HDP Y+N++DFRWCGSDYDALGNR
Sbjct:   23 WTQSSSPWSTPQDCWWPLDTDDTRLCAFDGSPGNHQCEHDPAYLNESDFRWCGSDYDALGNR 84
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BLAST of mRNA_C-linearis_contig8.15666.1 vs. uniprot
Match: A0A6H5KPD7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPD7_9PHAE)

HSP 1 Score: 124 bits (310), Expect = 1.730e-31
Identity = 47/62 (75.81%), Postives = 59/62 (95.16%), Query Frame = 1 
Query:    1 WSQSASPWSTPRECYWPLDTEDTRLCAFDSSSGDHKCDHDPVYMNDTDFRWCGSDYDALGNR 186
            W+QS+SPWSTP++C+WPLDT+DTRLCAFD S G+H+C+HDP Y+N++DFRWCGSDYDALGNR
Sbjct:  270 WTQSSSPWSTPQDCWWPLDTDDTRLCAFDDSPGNHQCEHDPAYLNESDFRWCGSDYDALGNR 331
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BLAST of mRNA_C-linearis_contig8.15666.1 vs. uniprot
Match: A0A6H5JJ68_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ68_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 7.970e-26
Identity = 42/61 (68.85%), Postives = 52/61 (85.25%), Query Frame = 1 
Query:    1 WSQSASPWSTPRECYWPLDTEDTRLCAFDSSSGDHKCDHDPVYMNDTDFRWCGSDYDALGN 183
            W+QS SPW+TPREC+WP+D+ED RLC  +S SG HKC+HD  YMN ++FRWCGS+YDALGN
Sbjct:  270 WTQSTSPWATPRECWWPIDSEDERLCTSNSGSGKHKCEHDERYMNLSEFRWCGSNYDALGN 330
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BLAST of mRNA_C-linearis_contig8.15666.1 vs. uniprot
Match: D7FVE6_ECTSI (Voltage Gated Calcium/Sodium Channel subunit alpha n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVE6_ECTSI)

HSP 1 Score: 105 bits (261), Expect = 7.210e-25
Identity = 41/61 (67.21%), Postives = 52/61 (85.25%), Query Frame = 1 
Query:    1 WSQSASPWSTPRECYWPLDTEDTRLCAFDSSSGDHKCDHDPVYMNDTDFRWCGSDYDALGN 183
            W+QS SPW+TPREC+WP+D+E+ RLC  +S SG HKC+HD  YMN ++FRWCGS+YDALGN
Sbjct:  270 WTQSTSPWATPRECWWPIDSENERLCTSNSGSGKHKCEHDDRYMNLSEFRWCGSNYDALGN 330
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BLAST of mRNA_C-linearis_contig8.15666.1 vs. uniprot
Match: A0A812YMS5_9DINO (SCN4A protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812YMS5_9DINO)

HSP 1 Score: 67.8 bits (164), Expect = 9.530e-12
Identity = 29/61 (47.54%), Postives = 37/61 (60.66%), Query Frame = 1 
Query:    1 WSQSASPWSTPRECYWPLDTEDTRLCAFDSSSGDHKCDHDPVYMNDTDFRWCGSDYDALGN 183
            W++ +SPWSTP+ C+WP+D ED   C     +G H+C       N    RWCGSDYD LGN
Sbjct:  168 WTKDSSPWSTPQPCFWPVDPEDESFCTV-GEAGLHRC------PNAAQARWCGSDYDFLGN 221
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BLAST of mRNA_C-linearis_contig8.15666.1 vs. uniprot
Match: A0A2D4C0A0_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C0A0_PYTIN)

HSP 1 Score: 54.7 bits (130), Expect = 4.050e-7
Identity = 23/60 (38.33%), Postives = 34/60 (56.67%), Query Frame = 1 
Query:    1 WSQSASPWSTPRECYWPLDTEDTRLCAFDSSSGDHKCDHDPVYMNDTDFRWCGSDYDALG 180
            +++  SPW   ++C+WP+DT D RLC+  +SSG H C            R CG+D+D  G
Sbjct:  275 YTKETSPWFHAQDCFWPIDTNDLRLCSVAASSGQHLC---------PSKRTCGADFDTYG 325
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BLAST of mRNA_C-linearis_contig8.15666.1 vs. uniprot
Match: W2Q9N8_PHYPN (Uncharacterized protein n=10 Tax=Phytophthora TaxID=4783 RepID=W2Q9N8_PHYPN)

HSP 1 Score: 54.3 bits (129), Expect = 5.540e-7
Identity = 23/59 (38.98%), Postives = 34/59 (57.63%), Query Frame = 1 
Query:    7 QSASPWSTPRECYWPLDTEDTRLCAFDSSSGDHKCDHDPVYMNDTDFRWCGSDYDALGN 183
            +  SPW T + C+WP++ +DT+LCA  S SG+H+C            + CG +YD  GN
Sbjct:  319 KETSPWYTAQPCFWPVNPDDTQLCARPSYSGNHQC---------VSGQTCGGNYDVFGN 368
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15666.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D8LI93_ECTSI1.730e-3175.81Similar to sodium channel, voltage-gated, type IX,... [more]
A0A6H5KPD7_9PHAE1.730e-3175.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJ68_9PHAE7.970e-2668.85Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
D7FVE6_ECTSI7.210e-2567.21Voltage Gated Calcium/Sodium Channel subunit alpha... [more]
A0A812YMS5_9DINO9.530e-1247.54SCN4A protein n=1 Tax=Symbiodinium sp. KB8 TaxID=2... [more]
A0A2D4C0A0_PYTIN4.050e-738.33Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
W2Q9N8_PHYPN5.540e-738.98Uncharacterized protein n=10 Tax=Phytophthora TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig8contigC-linearis_contig8:2427862..2428048 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score124.4
Seed ortholog evalue1.9e-26
Seed eggNOG ortholog2880.D8LI93
KEGG koko:K04851,ko:K04857
KEGG TC1.A.1.11.1,1.A.1.11.2,1.A.1.11.20,1.A.1.11.21
KEGG Pathwayko04010,ko04020,ko04022,ko04024,ko04218,ko04260,ko04261,ko04270,ko04530,ko04713,ko04723,ko04724,ko04725,ko04726,ko04727,ko04728,ko04911,ko04912,ko04921,ko04924,ko04925,ko04927,ko04930,ko04934,ko04973,ko05010,ko05031,ko05410,ko05412,ko05414,map04010,map04020,map04022,map04024,map04218,map04260,map04261,map04270,map04530,map04713,map04723,map04724,map04725,map04726,map04727,map04728,map04911,map04912,map04921,map04924,map04925,map04927,map04930,map04934,map04973,map05010,map05031,map05410,map05412,map05414
Hectar predicted targeting categoryother localisation
EggNOG free text desc.membrane depolarization during action potential
EggNOG OGsKOG2301@1,KOG2301@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04040
Exons1
Model size189
Cds size186
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930546.7667158-CDS-C-linearis_contig8:2427861..24280471622930546.7667158-CDS-C-linearis_contig8:2427861..2428047Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2427862..2428047 +
1690881125.5987353-CDS-C-linearis_contig8:2427861..24280471690881125.5987353-CDS-C-linearis_contig8:2427861..2428047Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2427862..2428047 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig8.15666.1prot_C-linearis_contig8.15666.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig8 2427862..2428047 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig8.15666.1

>prot_C-linearis_contig8.15666.1 ID=prot_C-linearis_contig8.15666.1|Name=mRNA_C-linearis_contig8.15666.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=62bp
WSQSASPWSTPRECYWPLDTEDTRLCAFDSSSGDHKCDHDPVYMNDTDFR
WCGSDYDALGNR
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mRNA from alignment at C-linearis_contig8:2427862..2428048+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig8.15666.1 ID=mRNA_C-linearis_contig8.15666.1|Name=mRNA_C-linearis_contig8.15666.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=187bp|location=Sequence derived from alignment at C-linearis_contig8:2427862..2428048+ (Chordaria linearis ClinC8C monoicous)
TGGAGCCAAAGCGCCAGCCCCTGGTCCACGCCGCGGGAGTGCTACTGGCC
GCTGGACACGGAAGACACGCGGCTGTGCGCCTTCGACTCCTCCTCGGGTG
ACCACAAGTGTGACCACGACCCTGTGTACATGAACGATACCGACTTCCGG
TGGTGCGGCAGCGACTACGACGCGCTCGGCAACCGCC
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Coding sequence (CDS) from alignment at C-linearis_contig8:2427862..2428048+

>mRNA_C-linearis_contig8.15666.1 ID=mRNA_C-linearis_contig8.15666.1|Name=mRNA_C-linearis_contig8.15666.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=372bp|location=Sequence derived from alignment at C-linearis_contig8:2427862..2428048+ (Chordaria linearis ClinC8C monoicous)
TGGAGCCAAAGCGCCAGCCCCTGGTCCACGCCGCGGGAGTGCTACTGGCC
GCTGGACACGGAAGACACGCGGCTGTGCGCCTTCGACTCCTCCTCGGGTG
ACCACAAGTGTGACCACGACCCTGTGTACATGAACGATACCGACTTCCGG
TGGTGCGGCAGCGACTACGACGCGCTCGGCAACCGCTGGAGCCAAAGCGC
CAGCCCCTGGTCCACGCCGCGGGAGTGCTACTGGCCGCTGGACACGGAAG
ACACGCGGCTGTGCGCCTTCGACTCCTCCTCGGGTGACCACAAGTGTGAC
CACGACCCTGTGTACATGAACGATACCGACTTCCGGTGGTGCGGCAGCGA
CTACGACGCGCTCGGCAACCGC
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