prot_C-linearis_contig8.15652.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig8.15652.1
Unique Nameprot_C-linearis_contig8.15652.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length190
Homology
[Close]
BLAST of mRNA_C-linearis_contig8.15652.1 vs. uniprot
Match: D8LI91_ECTSI (G_PROTEIN_RECEP_F3_4 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI91_ECTSI)

HSP 1 Score: 209 bits (531), Expect = 4.390e-64
Identity = 111/173 (64.16%), Postives = 128/173 (73.99%), Query Frame = 0 
Query:    1 VDVVLLLAWTLVDRPRKVDTVEIVSGGIEVVNSECMGGSDFPVFGLILWSWKAGLTCFGVVMAAKTWNCEDGVGESQQICLSVYNTALLGLVNFATSVFLADSTV--IRQGGSALTLICGTVFSVSVLFGPKVYKLWRYGDLSSNPAERRASMTMTT--SYGQRGSLTDKTGS 169
            VD V LL W ++DRP++ D  E V G IEV N +C+G S   VF  ILWSWKA L CFGV+MAAKTW+CEDGVGESQ ICL VYNT LLGL+N    VFL D++V  I  G SA TLI GTVF+VSVLF PKVY+LW YGDL +NPAERR S TMT   S+G+RGS+T  TGS
Sbjct:   36 VDAVFLLLWAIMDRPQRSDISETV-GDIEVTNWKCVGASGTSVFRAILWSWKACLNCFGVIMAAKTWHCEDGVGESQPICLCVYNTTLLGLINLGLQVFLEDTSVAVIGVGASAFTLIGGTVFAVSVLFVPKVYQLWMYGDLPANPAERRGSTTMTNTHSFGRRGSVTKNTGS 207
[Close]
BLAST of mRNA_C-linearis_contig8.15652.1 vs. uniprot
Match: UPI0003F0A42C (gamma-aminobutyric acid type B receptor subunit 2-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0003F0A42C)

HSP 1 Score: 57.8 bits (138), Expect = 1.600e-6
Identity = 32/102 (31.37%), Postives = 60/102 (58.82%), Query Frame = 0 
Query:   48 LWSWKAGLTCFGVVMAAKTWN-CEDGVGESQQICLSVYNTALLGLVNFATSVFLADSTVIRQGGSALTLICGTVFSVSVLFGPKVYKLWRYGDLSSNPAERR 148
            L++ K  L  FG  +A +T N C DG+ +S+QIC+SVYN  +L ++    ++ ++D+  +  G +A  ++  T F++ ++F PK+  +    D S +  +RR
Sbjct:  102 LYAEKGLLLLFGCFLAYETRNVCVDGLNDSKQICVSVYNIVVLCVLGITVNLAVSDNPTLTYGFTAAIIVLCTTFTLCLIFVPKIKMI--ISDPSGDETKRR 201
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15652.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LI91_ECTSI4.390e-6464.16G_PROTEIN_RECEP_F3_4 domain-containing protein n=1... [more]
UPI0003F0A42C1.600e-631.37gamma-aminobutyric acid type B receptor subunit 2-... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR017978GPCR family 3, C-terminalPFAMPF000037tm_3coord: 1..132
e-value: 9.0E-15
score: 55.0
IPR017978GPCR family 3, C-terminalPROSITEPS50259G_PROTEIN_RECEP_F3_4coord: 1..150
score: 8.8
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 133..190
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 101..111
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 68..78
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 79..100
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..45
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 112..132
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 46..67
NoneNo IPR availableTMHMMTMhelixcoord: 45..67
NoneNo IPR availableTMHMMTMhelixcoord: 105..127
NoneNo IPR availableTMHMMTMhelixcoord: 79..101

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig8contigC-linearis_contig8:2215963..2217770 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig8.15652.1mRNA_C-linearis_contig8.15652.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig8 2215963..2217772 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig8.15652.1 ID=prot_C-linearis_contig8.15652.1|Name=mRNA_C-linearis_contig8.15652.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=190bp
VDVVLLLAWTLVDRPRKVDTVEIVSGGIEVVNSECMGGSDFPVFGLILWS
WKAGLTCFGVVMAAKTWNCEDGVGESQQICLSVYNTALLGLVNFATSVFL
ADSTVIRQGGSALTLICGTVFSVSVLFGPKVYKLWRYGDLSSNPAERRAS
MTMTTSYGQRGSLTDKTGSGGGSAGAKKATAAAKKTAAGA
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR017978GPCR_3_C