mRNA_C-linearis_contig8.15652.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig8.15652.1
Unique NamemRNA_C-linearis_contig8.15652.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig8.15652.1 vs. uniprot
Match: D8LI91_ECTSI (G_PROTEIN_RECEP_F3_4 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI91_ECTSI)

HSP 1 Score: 209 bits (531), Expect = 4.390e-64
Identity = 111/173 (64.16%), Postives = 128/173 (73.99%), Query Frame = 1 
Query:    1 VDVVLLLAWTLVDRPRKVDTVEIVSGGIEVVNSECMGGSDFPVFGLILWSWKAGLTCFGVVMAAKTWNCEDGVGESQQICLSVYNTALLGLVNFATSVFLADSTV--IRQGGSALTLICGTVFSVSVLFGPKVYKLWRYGDLSSNPAERRASMTMTT--SYGQRGSLTDKTGS 507
            VD V LL W ++DRP++ D  E V G IEV N +C+G S   VF  ILWSWKA L CFGV+MAAKTW+CEDGVGESQ ICL VYNT LLGL+N    VFL D++V  I  G SA TLI GTVF+VSVLF PKVY+LW YGDL +NPAERR S TMT   S+G+RGS+T  TGS
Sbjct:   36 VDAVFLLLWAIMDRPQRSDISETV-GDIEVTNWKCVGASGTSVFRAILWSWKACLNCFGVIMAAKTWHCEDGVGESQPICLCVYNTTLLGLINLGLQVFLEDTSVAVIGVGASAFTLIGGTVFAVSVLFVPKVYQLWMYGDLPANPAERRGSTTMTNTHSFGRRGSVTKNTGS 207
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BLAST of mRNA_C-linearis_contig8.15652.1 vs. uniprot
Match: UPI0003F0A42C (gamma-aminobutyric acid type B receptor subunit 2-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0003F0A42C)

HSP 1 Score: 57.8 bits (138), Expect = 1.600e-6
Identity = 32/102 (31.37%), Postives = 60/102 (58.82%), Query Frame = 1 
Query:  142 LWSWKAGLTCFGVVMAAKTWN-CEDGVGESQQICLSVYNTALLGLVNFATSVFLADSTVIRQGGSALTLICGTVFSVSVLFGPKVYKLWRYGDLSSNPAERR 444
            L++ K  L  FG  +A +T N C DG+ +S+QIC+SVYN  +L ++    ++ ++D+  +  G +A  ++  T F++ ++F PK+  +    D S +  +RR
Sbjct:  102 LYAEKGLLLLFGCFLAYETRNVCVDGLNDSKQICVSVYNIVVLCVLGITVNLAVSDNPTLTYGFTAAIIVLCTTFTLCLIFVPKIKMI--ISDPSGDETKRR 201
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15652.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LI91_ECTSI4.390e-6464.16G_PROTEIN_RECEP_F3_4 domain-containing protein n=1... [more]
UPI0003F0A42C1.600e-631.37gamma-aminobutyric acid type B receptor subunit 2-... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig8contigC-linearis_contig8:2215963..2217772 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score210.3
Seed ortholog evalue7.9e-52
Seed eggNOG ortholog2880.D8LI91
KEGG koko:K04615
KEGG TC9.A.14.15.1
KEGG Pathwayko04024,ko04080,ko04727,ko04742,ko04915,ko05032,map04024,map04080,map04727,map04742,map04915,map05032
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0004888,GO:0004930,GO:0004965,GO:0005575,GO:0006935,GO:0006950,GO:0007154,GO:0007165,GO:0007186,GO:0007214,GO:0008066,GO:0008150,GO:0009267,GO:0009605,GO:0009987,GO:0009991,GO:0016020,GO:0016021,GO:0016917,GO:0023052,GO:0030587,GO:0030594,GO:0031152,GO:0031224,GO:0031667,GO:0031668,GO:0031669,GO:0032502,GO:0033554,GO:0038023,GO:0040011,GO:0042221,GO:0042330,GO:0042594,GO:0043327,GO:0044425,GO:0044764,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051703,GO:0051704,GO:0051716,GO:0060089,GO:0065007,GO:0071496,GO:0090702,GO:0098630,GO:0098743,GO:0099120,GO:0099528
EggNOG free text desc.G-protein coupled GABA receptor activity
EggNOG OGsKOG1055@1,KOG1055@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04030
Exons4
Model size573
Cds size570
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig8.15652.1prot_C-linearis_contig8.15652.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig8 2215963..2217770 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930543.7752702-CDS-C-linearis_contig8:2215962..22160471622930543.7752702-CDS-C-linearis_contig8:2215962..2216047Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2215963..2216047 +
1690881123.935682-CDS-C-linearis_contig8:2215962..22160471690881123.935682-CDS-C-linearis_contig8:2215962..2216047Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2215963..2216047 +
1622930543.789204-CDS-C-linearis_contig8:2216425..22165651622930543.789204-CDS-C-linearis_contig8:2216425..2216565Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2216426..2216565 +
1690881123.9480343-CDS-C-linearis_contig8:2216425..22165651690881123.9480343-CDS-C-linearis_contig8:2216425..2216565Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2216426..2216565 +
1622930543.8061564-CDS-C-linearis_contig8:2216872..22170461622930543.8061564-CDS-C-linearis_contig8:2216872..2217046Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2216873..2217046 +
1690881123.956873-CDS-C-linearis_contig8:2216872..22170461690881123.956873-CDS-C-linearis_contig8:2216872..2217046Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2216873..2217046 +
1622930543.8230124-CDS-C-linearis_contig8:2217599..22177701622930543.8230124-CDS-C-linearis_contig8:2217599..2217770Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2217600..2217770 +
1690881123.9664147-CDS-C-linearis_contig8:2217599..22177701690881123.9664147-CDS-C-linearis_contig8:2217599..2217770Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2217600..2217770 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig8.15652.1

>prot_C-linearis_contig8.15652.1 ID=prot_C-linearis_contig8.15652.1|Name=mRNA_C-linearis_contig8.15652.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=190bp
VDVVLLLAWTLVDRPRKVDTVEIVSGGIEVVNSECMGGSDFPVFGLILWS
WKAGLTCFGVVMAAKTWNCEDGVGESQQICLSVYNTALLGLVNFATSVFL
ADSTVIRQGGSALTLICGTVFSVSVLFGPKVYKLWRYGDLSSNPAERRAS
MTMTTSYGQRGSLTDKTGSGGGSAGAKKATAAAKKTAAGA
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mRNA from alignment at C-linearis_contig8:2215963..2217772+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig8.15652.1 ID=mRNA_C-linearis_contig8.15652.1|Name=mRNA_C-linearis_contig8.15652.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1810bp|location=Sequence derived from alignment at C-linearis_contig8:2215963..2217772+ (Chordaria linearis ClinC8C monoicous)
GTAGACGTGGTGCTGCTACTGGCCTGGACGCTGGTGGACAGGCCGCGAAA
AGTGGATACTGTCGAGATCGTCAGCGGTGGCATAGGCGAGCAAGACAAAG
AGTATAGGAATTGAGTCGAACATCGCAAGTGAACGTGATGATCCCGCTTC
AATTGATCGCTGGAGAGTTTCCCTTTCCCCCCTGAGGCCGACGCATGTGG
AGTGTGCGCCAAGCAATCAACGCTCCCTGTTCCAAAGCAAGGGGGAGTGA
AGGGAAGGAAGCAAGGGAAGGGAAAACCGGCTCAGGAGTACTCTACTTTG
TACATATACGGCGCAACATGCACCCGTCCCCAAACACATGATGTGTTAGT
TTTGCCTCCTCATTCACGTTATCCCCAACCAGCTGATTCCTCGTCGCTTG
CTCAACTTCGTACTTTGTCATTCACGTCGCGTATGATCTACCGCCGTATT
CATCGTTTCTCAGAGGTGGTCAACTCGGAGTGCATGGGAGGGTCGGACTT
TCCAGTGTTCGGCTTGATCCTGTGGTCGTGGAAGGCCGGTCTGACCTGCT
TCGGGGTGGTGATGGCGGCAAAGACGTGGAACTGCGAAGATGGCGTGGGC
GAGGTGTGTGCGAAGATAACCGCACGGTACCATTCTCATATCTATTTTCA
GCAGACCTTCAAATAAATGCTGGTGTTTCCAAGCCAAGCAGCGTGGGACA
AGCATACCGGGTGTTCTGGCAATTTATGCGGCTAGACTACCCACCAAGAA
GGCCGACGCGGTGAATTTACGAGTGCACGCCATACGAACATTTTACGGTT
CTGTGCCTCTTTCTTGCATGGAACGTGTACCGTGAAGATGGTGAGAGCTA
GCTAACGCCCCCGGTCCCGCCCCGCCCCGCCTCCACATCCGCGTATGAAT
CCTATTTCAGTCGCAGCAGATCTGCCTGTCCGTCTACAACACGGCCTTGC
TGGGACTGGTCAACTTCGCCACTTCTGTTTTTCTCGCGGACAGCACCGTG
ATAAGACAGGGGGGCAGCGCCCTCACCTTGATCTGCGGGACTGTATTCTC
GGTTTCTGTTCTCTTTGGCCCGAAGGTTTACAAGGTGACGACTCGCTCGA
CGCACTCGCTCGTAAAAGTAAAAAATGGGTGGGTCCTGCCCCCCCTGACT
TGAGAACTTTGTTTTTGGCGGCGGCGTCGCATGCATGCATGGGCATCGAT
AGAATATACTTCTATAGATACTATTCGTCGTGTTATTGATAGGGTGAGGC
AGGCCACTTCGGATCCAGTGATGCATAAACCTGAAGACCATTGCTTGGAA
ATGAAGGGTTAGGGTTGGACGAAATCTGCTGGTCGGGTGGCCTGGTCAAC
CACCAATGATTGGGATGGTATGTGATACTCGTTGTCTGTTGAATCAGTGC
TCTCTTTTCGCATCCGCCCTGTTTCTCCCCTAGGTCTCTCTCACCTTCGG
CTTCGATTTGTCGGTGAATTCCTGCACTATTTCCCCCTCCGCTAAACCTG
CTGTGCTGCCCCTTCCATTTCCCATCATCTCTAACGCTCTCCCCGCCCGA
CCACGACGCCGCGTCCGCTTCCCTCTCTTGTATCCATCCTTGTATCCACG
GGAAACACTCAATCCGGTCGAACCAAATCTGAATCAGCTGTGGAGGTACG
GGGATCTCAGCTCGAACCCGGCCGAGCGCAGGGCGTCTATGACCATGACA
ACATCGTACGGCCAACGCGGCTCGCTCACGGACAAAACCGGTAGCGGTGG
AGGTAGTGCCGGGGCAAAAAAAGCAACTGCCGCAGCAAAAAAAACAGCTG
CCGGGGCGGC
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Coding sequence (CDS) from alignment at C-linearis_contig8:2215963..2217772+

>mRNA_C-linearis_contig8.15652.1 ID=mRNA_C-linearis_contig8.15652.1|Name=mRNA_C-linearis_contig8.15652.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1140bp|location=Sequence derived from alignment at C-linearis_contig8:2215963..2217772+ (Chordaria linearis ClinC8C monoicous)
GTAGACGTGGTGCTGCTACTGGCCTGGACGCTGGTGGACAGGCCGCGAAA
AGTGGATACTGTCGAGATCGTCAGCGGTGGCATAGGTAGACGTGGTGCTG
CTACTGGCCTGGACGCTGGTGGACAGGCCGCGAAAAGTGGATACTGTCGA
GATCGTCAGCGGTGGCATAGAGGTGGTCAACTCGGAGTGCATGGGAGGGT
CGGACTTTCCAGTGTTCGGCTTGATCCTGTGGTCGTGGAAGGCCGGTCTG
ACCTGCTTCGGGGTGGTGATGGCGGCAAAGACGTGGAACTGCGAAGATGG
CGTGGGCGAGAGGTGGTCAACTCGGAGTGCATGGGAGGGTCGGACTTTCC
AGTGTTCGGCTTGATCCTGTGGTCGTGGAAGGCCGGTCTGACCTGCTTCG
GGGTGGTGATGGCGGCAAAGACGTGGAACTGCGAAGATGGCGTGGGCGAG
TCGCAGCAGATCTGCCTGTCCGTCTACAACACGGCCTTGCTGGGACTGGT
CAACTTCGCCACTTCTGTTTTTCTCGCGGACAGCACCGTGATAAGACAGG
GGGGCAGCGCCCTCACCTTGATCTGCGGGACTGTATTCTCGGTTTCTGTT
CTCTTTGGCCCGAAGGTTTACAAGTCGCAGCAGATCTGCCTGTCCGTCTA
CAACACGGCCTTGCTGGGACTGGTCAACTTCGCCACTTCTGTTTTTCTCG
CGGACAGCACCGTGATAAGACAGGGGGGCAGCGCCCTCACCTTGATCTGC
GGGACTGTATTCTCGGTTTCTGTTCTCTTTGGCCCGAAGGTTTACAAGCT
GTGGAGGTACGGGGATCTCAGCTCGAACCCGGCCGAGCGCAGGGCGTCTA
TGACCATGACAACATCGTACGGCCAACGCGGCTCGCTCACGGACAAAACC
GGTAGCGGTGGAGGTAGTGCCGGGGCAAAAAAAGCAACTGCCGCAGCAAA
AAAAACAGCTGCCGGGGCGCTGTGGAGGTACGGGGATCTCAGCTCGAACC
CGGCCGAGCGCAGGGCGTCTATGACCATGACAACATCGTACGGCCAACGC
GGCTCGCTCACGGACAAAACCGGTAGCGGTGGAGGTAGTGCCGGGGCAAA
AAAAGCAACTGCCGCAGCAAAAAAAACAGCTGCCGGGGCG
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