prot_C-linearis_contig8.15642.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig8.15642.1
Unique Nameprot_C-linearis_contig8.15642.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length199
Homology
[Close]
BLAST of mRNA_C-linearis_contig8.15642.1 vs. uniprot
Match: D8LUC9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LUC9_ECTSI)

HSP 1 Score: 253 bits (647), Expect = 1.640e-83
Identity = 120/167 (71.86%), Postives = 142/167 (85.03%), Query Frame = 0 
Query:   32 RRGLGNAVKQGPLVPEGSFVKDNWIINREFFFKRDQTKNGADLLNARENQLAKFFKSGEVGYWKVERRPIPGAPKRKIPLLNESMDVLVLDVPEQGERKNLIVSYEIPVAGGRYHPTSVMFAEKGGIFVASSKEELVGPAAAARKRIGSFTVDLPTLPPMVDRNFAL 198
            RRG+  AVK  PLV +GSF K +W I R+FFFKRDQ KNGAD L AREN+LA+F  SGEVGYWK+ RRPIPGAPKR+ PL NE +D LVLD+PEQG R+NLIVSYEIP++ GRYHP+S+MFA+KG I+VA++KE+LVGPAAAARK+IGSF+VDLPTL PMVDR F L
Sbjct:    4 RRGIKGAVKNTPLVQDGSFAKADWRITRDFFFKRDQAKNGADFLTARENKLARFNNSGEVGYWKLVRRPIPGAPKRQSPLGNEGIDYLVLDIPEQGPRRNLIVSYEIPISNGRYHPSSIMFAQKGTIYVANAKEQLVGPAAAARKKIGSFSVDLPTLEPMVDRTFTL 170
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15642.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LUC9_ECTSI1.640e-8371.86Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 29..198
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..28
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 22..28
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 10..21
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..9
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..28
score: 0.886
NoneNo IPR availableTMHMMTMhelixcoord: 10..27

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig8contigC-linearis_contig8:2185193..2186932 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig8.15642.1mRNA_C-linearis_contig8.15642.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig8 2184290..2187050 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig8.15642.1 ID=prot_C-linearis_contig8.15642.1|Name=mRNA_C-linearis_contig8.15642.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=199bp
MAPRGRPARGALGLFLILLAVSVGLASARRGRRGLGNAVKQGPLVPEGSF
VKDNWIINREFFFKRDQTKNGADLLNARENQLAKFFKSGEVGYWKVERRP
IPGAPKRKIPLLNESMDVLVLDVPEQGERKNLIVSYEIPVAGGRYHPTSV
MFAEKGGIFVASSKEELVGPAAAARKRIGSFTVDLPTLPPMVDRNFAL*
back to top