mRNA_C-linearis_contig8.15642.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_C-linearis_contig8.15642.1
Unique Name	mRNA_C-linearis_contig8.15642.1
Type	mRNA
Organism	Chordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)

Homology

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BLAST of mRNA_C-linearis_contig8.15642.1 vs. uniprot
Match: D8LUC9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LUC9_ECTSI)

HSP 1 Score: 254 bits (648), Expect = 7.140e-79
Identity = 120/167 (71.86%), Postives = 142/167 (85.03%), Query Frame = 2

Query:  212 RRGLGNAVKQGPLVPEGSFVKDNWIINREFFFKRDQTKNGADLLNARENQLAKFFKSGEVGYWKVERRPIPGAPKRKIPLLNESMDVLVLDVPEQGERKNLIVSYEIPVAGGRYHPTSVMFAEKGGIFVASSKEELVGPAAAARKRIGSFTVDLPTLPPMVDRNFAL 712
            RRG+  AVK  PLV +GSF K +W I R+FFFKRDQ KNGAD L AREN+LA+F  SGEVGYWK+ RRPIPGAPKR+ PL NE +D LVLD+PEQG R+NLIVSYEIP++ GRYHP+S+MFA+KG I+VA++KE+LVGPAAAARK+IGSF+VDLPTL PMVDR F L
Sbjct:    4 RRGIKGAVKNTPLVQDGSFAKADWRITRDFFFKRDQAKNGADFLTARENKLARFNNSGEVGYWKLVRRPIPGAPKRQSPLGNEGIDYLVLDIPEQGPRRNLIVSYEIPISNGRYHPSSIMFAQKGTIYVANAKEQLVGPAAAARKKIGSFSVDLPTLEPMVDRTFTL 170

The following BLAST results are available for this feature:

BLAST of mRNA_C-linearis_contig8.15642.1 vs. uniprot

BLAST of mRNA_C-linearis_contig8.15642.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
D8LUC9_ECTSI	7.140e-79	71.86	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C-linearis_contig8	contig	C-linearis_contig8:2184290..2187050 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	signal peptide
Ec32 ortholog description	expressed unknown protein
Ec32 ortholog	Ec-14_004500.1
Exons	4
Model size	1618
Cds size	597
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_C-linearis_contig8.15642.1	prot_C-linearis_contig8.15642.1	Chordaria linearis ClinC8C monoicous	polypeptide	C-linearis_contig8 2185193..2186932 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622930542.6486025-UTR-C-linearis_contig8:2184289..2185192	1622930542.6486025-UTR-C-linearis_contig8:2184289..2185192	Chordaria linearis ClinC8C monoicous	UTR	C-linearis_contig8 2184290..2185192 -
1690881123.4240642-UTR-C-linearis_contig8:2184289..2185192	1690881123.4240642-UTR-C-linearis_contig8:2184289..2185192	Chordaria linearis ClinC8C monoicous	UTR	C-linearis_contig8 2184290..2185192 -
1622930542.7326417-UTR-C-linearis_contig8:2186932..2187050	1622930542.7326417-UTR-C-linearis_contig8:2186932..2187050	Chordaria linearis ClinC8C monoicous	UTR	C-linearis_contig8 2186933..2187050 -
1690881123.4730594-UTR-C-linearis_contig8:2186932..2187050	1690881123.4730594-UTR-C-linearis_contig8:2186932..2187050	Chordaria linearis ClinC8C monoicous	UTR	C-linearis_contig8 2186933..2187050 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622930542.667523-CDS-C-linearis_contig8:2185192..2185378	1622930542.667523-CDS-C-linearis_contig8:2185192..2185378	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig8 2185193..2185378 -
1690881123.4351547-CDS-C-linearis_contig8:2185192..2185378	1690881123.4351547-CDS-C-linearis_contig8:2185192..2185378	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig8 2185193..2185378 -
1622930542.6815772-CDS-C-linearis_contig8:2185602..2185812	1622930542.6815772-CDS-C-linearis_contig8:2185602..2185812	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig8 2185603..2185812 -
1690881123.445297-CDS-C-linearis_contig8:2185602..2185812	1690881123.445297-CDS-C-linearis_contig8:2185602..2185812	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig8 2185603..2185812 -
1622930542.6944299-CDS-C-linearis_contig8:2186090..2186153	1622930542.6944299-CDS-C-linearis_contig8:2186090..2186153	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig8 2186091..2186153 -
1690881123.4544008-CDS-C-linearis_contig8:2186090..2186153	1690881123.4544008-CDS-C-linearis_contig8:2186090..2186153	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig8 2186091..2186153 -
1622930542.7170691-CDS-C-linearis_contig8:2186794..2186932	1622930542.7170691-CDS-C-linearis_contig8:2186794..2186932	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig8 2186795..2186932 -
1690881123.4636326-CDS-C-linearis_contig8:2186794..2186932	1690881123.4636326-CDS-C-linearis_contig8:2186794..2186932	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig8 2186795..2186932 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at C-linearis_contig8:2184290..2187050-
coding sequence from alignment at C-linearis_contig8:2184290..2187050-

protein sequence of mRNA_C-linearis_contig8.15642.1

>prot_C-linearis_contig8.15642.1 ID=prot_C-linearis_contig8.15642.1|Name=mRNA_C-linearis_contig8.15642.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=199bp
MAPRGRPARGALGLFLILLAVSVGLASARRGRRGLGNAVKQGPLVPEGSF
VKDNWIINREFFFKRDQTKNGADLLNARENQLAKFFKSGEVGYWKVERRP
IPGAPKRKIPLLNESMDVLVLDVPEQGERKNLIVSYEIPVAGGRYHPTSV
MFAEKGGIFVASSKEELVGPAAAARKRIGSFTVDLPTLPPMVDRNFAL*

mRNA from alignment at C-linearis_contig8:2184290..2187050-

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_C-linearis_contig8.15642.1 ID=mRNA_C-linearis_contig8.15642.1|Name=mRNA_C-linearis_contig8.15642.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2761bp|location=Sequence derived from alignment at C-linearis_contig8:2184290..2187050- (Chordaria linearis ClinC8C monoicous)
GTCGGGACCGCGCTCGTTTGCACCTGCTGAGAGATCGCCGTGGACAACAC
GTAGTTAAATTCCTTACCGGTAACACTGGTCTTGTGGAAGCTTGTCTACC
CCCGGCGATACGATAGTAATGGCACCAAGAGGGCGACCAGCACGGGGGGC
TCTTGGGTTGTTTCTCATCCTGCTTGCGGTCTCCGTTGGCCTGGCTTCTG
CAAGAAGGGGACGCCGAGGATTGGGAAACGCGGTCAAGCAGGGGCCGTTG
GTGCCGGTGCGTCAATGTTTGATATAGTGTGAAGCGACGGCAGTGCAGTC
GCAGGCTCTCTACTGCACTTGCAGTGTCACCGACACACACGCGGCATCCT
CCCAGAGAGCGAGAGCGACAGAGAGCAGAGCTATGCTGTGGTACCGTATT
AAGTACAGTAGAGGTGGTGCCACGTTACCTGCGTTGGGTTCAACGCTGCC
CGATGTGTTGCAAACCATCGCGTTGCTAAGAACGAAGACAAGTAGGCGAC
AATGCTCAAGAAAACTCGGCCAAACCGGTGAACGCCAGTAAAACTGCTGT
ACACAGCTTTGAGCTTCGCCCACAGATCAAACTACAGAGACTAGGGTCTA
GTCTACTACATGTAGTTTCTCCTGCACTTCAAGGCTCTGTCAACGGTCCG
TGTGCTCTTGGCGTCGCATTGACGAAACCCTTAATATTGGCTTTTATTTC
CAAGAGTTTGTGGTATCCGAGACGGGTCGTGTAGACCGGCTACAATTTGT
TGTCACGCCGCCGCGGATCGATGGACACGACACATGACACATGAAGGCTA
CTCGTTTTCTGCACACAACGATCATTTTGATTGATGGTGCTTGGTGTTGA
GCGTTTTCACTCGCTTTGGCGTACTACTTCCCCCCACGAAACAACAGGAG
GGTTCGTTCGTGAAGGACAACTGGATCATCAACCGCGAGTTTTTCTTCAA
GCGGGATCAGGTACTGAATGATTTGTTTACCCGTGGTCCGCGCTTCTTTG
ACCAGACTTTCTGTACGGGCCGGGCCGCAAGGACGCCGGCCCGATTCTGT
GACCTTTTTGATCAGCTCTCGAAGTCATGTGTAACTTCGATGGGTGTACG
TGTTGCGGTCCCTGTTATCACGCGGGTAAAGTCGGCATCGTGCCGCGTTA
GCGCTGATGTTCGTCCCCATCTCACGCGATCCGCGCATCCCCCCATGCTG
CTCTTTCCCACGCTCGCACGTGCATCCTTAAAACCCAGACCAAGAACGGG
GCCGACCTTTTAAACGCGCGCGAAAATCAACTGGCCAAGTTCTTCAAATC
GGGGGAGGTCGGCTACTGGAAGGTGGAGCGACGCCCCATCCCGGGCGCGC
CGAAGCGGAAAATCCCTCTCCTAAACGAATCGATGGACGTCCTCGTCCTA
GACGTCCCGGAGCAGGGAGAACGCAAGAACCTCATCGTCTCGTACGAGGT
GCGGTTCGCTGGGGTCTTTGTGACTGGTGACCTTTTGTTCCTACCAGTCA
GTCGGTCTTGGAAGCTGTGGCCATAAGTCCACATCCTTGTCAGCACTCGT
CTTCGATGGTGAATGAGGCAACCCACTTCTCGTCTGACGCTCCCCCTTTC
GTTCTCGGCGTTTTGTGGTTGAAACGCTTGCTCCTTTCCCTTCTTCTCGT
CGGTCCTTCCCACGCTGGAAAGATCCCGGTCGCCGGTGGGCGGTACCACC
CGACGTCGGTCATGTTCGCGGAAAAGGGCGGCATATTCGTGGCTAGTAGC
AAGGAGGAGCTCGTCGGACCGGCGGCGGCCGCGCGAAAGAGGATCGGGAG
CTTCACCGTCGACCTCCCCACGCTGCCACCCATGGTGGATCGAAATTTCG
CCTTGTAGACCGCTCGCTCGCTCGCTCTTTGCAAAAAGGGTATTTATGTT
CATGAGCATGCGCGGCCGTAAACTCTCTTAATTTTTGCCGGAACACCCCC
GCAGCTCTCGAAGGCTATGTAGAACGCAGTAGATACGTGTTTTGTCGTGG
ACCACAATAACGGGCCGTCGTGGGATAAATAAGGCAGTATTTTTGTGGTG
ATTTTAACGACGGGCCTAAGGAAGCTTTTTTTCCCCCCATGGTGGCAAAT
CGGAGAGCCATCTGTGGCATTAGCCTTCGCAGCTTTTTCTCCTTCAGAAA
ACGTATGGGATAAAGTATTGACTCCGTGCTTTGGGGTTAGGGTTAGGGTT
AGGGTTAGGGTCTGCGTACCCCCTCCCTGTTCTATTTCGTAGATACTCTT
AATTTCGTGCGTAGGCGGTCCATCTGTGGAGTGTGCGGGTAGTTCCGTGG
CCATGCCAGACGGCGATAGCTTGGTCACCATGTGGGAGGAGGGCGGTAGA
GGGGTGCTCGAGCTTTCGGCAAAAACACAAAGAAATCCAAAATCGGGGAT
AGTATCGGGTTTTGGTTTGAGTGCCCACCATCTGAGCTTTTATGGCGCCT
ACCAACCTGTCGTTCTCTCTGACGCTCGTGGTAGTGACACGTCACTGCGG
GCGCAAAGTGTTGCTGGTGAATGGACATAGAGAGCTTCCATACCTCTTGG
CGCGCGACAAGCACATAGTGTTTGGAACCAAAAATGTGGAGTCCATGTTC
AGGGCACATACATACCTCTGTCCCCTAAGCTCTGGGAAGTTATCTTTGTA
CAAGCCCTTGACGTTGTGCGATTCGATTTTAGGTTTTTCTAGTGCTTTCG
GCTTTTTTTGGGCTCAGCACAACCTTCTTCCTTATCAAGTTGGTGTTGGC
CCGTGCGGTCG

Coding sequence (CDS) from alignment at C-linearis_contig8:2184290..2187050-

>mRNA_C-linearis_contig8.15642.1 ID=mRNA_C-linearis_contig8.15642.1|Name=mRNA_C-linearis_contig8.15642.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1194bp|location=Sequence derived from alignment at C-linearis_contig8:2184290..2187050- (Chordaria linearis ClinC8C monoicous)
ATGGCACCAAGAGGGCGACCAGCACGGGGGGCTCTTGGGTTGTTTCTCAT
CCTGCTTGCGGTCTCCGTTGGCCTGGCTTCTGCAAGAAGGGGACGCCGAG
GATTGGGAAACGCGGTCAAGCAGGGGCCGTTGGTGCCGATGGCACCAAGA
GGGCGACCAGCACGGGGGGCTCTTGGGTTGTTTCTCATCCTGCTTGCGGT
CTCCGTTGGCCTGGCTTCTGCAAGAAGGGGACGCCGAGGATTGGGAAACG
CGGTCAAGCAGGGGCCGTTGGTGCCGGAGGGTTCGTTCGTGAAGGACAAC
TGGATCATCAACCGCGAGTTTTTCTTCAAGCGGGATCAGGAGGGTTCGTT
CGTGAAGGACAACTGGATCATCAACCGCGAGTTTTTCTTCAAGCGGGATC
AGACCAAGAACGGGGCCGACCTTTTAAACGCGCGCGAAAATCAACTGGCC
AAGTTCTTCAAATCGGGGGAGGTCGGCTACTGGAAGGTGGAGCGACGCCC
CATCCCGGGCGCGCCGAAGCGGAAAATCCCTCTCCTAAACGAATCGATGG
ACGTCCTCGTCCTAGACGTCCCGGAGCAGGGAGAACGCAAGAACCTCATC
GTCTCGTACGAGACCAAGAACGGGGCCGACCTTTTAAACGCGCGCGAAAA
TCAACTGGCCAAGTTCTTCAAATCGGGGGAGGTCGGCTACTGGAAGGTGG
AGCGACGCCCCATCCCGGGCGCGCCGAAGCGGAAAATCCCTCTCCTAAAC
GAATCGATGGACGTCCTCGTCCTAGACGTCCCGGAGCAGGGAGAACGCAA
GAACCTCATCGTCTCGTACGAGATCCCGGTCGCCGGTGGGCGGTACCACC
CGACGTCGGTCATGTTCGCGGAAAAGGGCGGCATATTCGTGGCTAGTAGC
AAGGAGGAGCTCGTCGGACCGGCGGCGGCCGCGCGAAAGAGGATCGGGAG
CTTCACCGTCGACCTCCCCACGCTGCCACCCATGGTGGATCGAAATTTCG
CCTTGTAGATCCCGGTCGCCGGTGGGCGGTACCACCCGACGTCGGTCATG
TTCGCGGAAAAGGGCGGCATATTCGTGGCTAGTAGCAAGGAGGAGCTCGT
CGGACCGGCGGCGGCCGCGCGAAAGAGGATCGGGAGCTTCACCGTCGACC
TCCCCACGCTGCCACCCATGGTGGATCGAAATTTCGCCTTGTAG