prot_C-linearis_contig8.15639.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig8.15639.1
Unique Nameprot_C-linearis_contig8.15639.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length126
Homology
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BLAST of mRNA_C-linearis_contig8.15639.1 vs. uniprot
Match: D8LUC5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LUC5_ECTSI)

HSP 1 Score: 167 bits (422), Expect = 3.890e-51
Identity = 86/125 (68.80%), Postives = 96/125 (76.80%), Query Frame = 0 
Query:    1 MEDIGQYHHQRALFELFGVGEGDGVYVLICGLILGGLSFTACCYCKVLDPLRLWCLKKTKDCCKRKPTXXXXXXXXTPAAPDRRHWYLNQTLQIDRRDRDELGPVGDREGLQGGWYGAKNGGFNV 125
            MED G  H +R LF++FGV E DG YVLI GLI+GGL+FTACCYCKV DPLR W +K    CCK+   XXXXXXXX      RRHWYLNQTLQIDR DRDELGP G R GL+GGWYGA+NGGF+V
Sbjct:    1 MEDGGLLHERRILFDVFGVSEDDGAYVLIAGLIMGGLTFTACCYCKVYDPLRNWSIKTYNRCCKKXXXXXXXXXXXXXXXXXRRHWYLNQTLQIDRADRDELGPQGARTGLKGGWYGARNGGFDV 125
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15639.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LUC5_ECTSI3.890e-5168.80Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 25..48
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 49..125
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..24
NoneNo IPR availableTMHMMTMhelixcoord: 26..48

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig8contigC-linearis_contig8:2154728..2155589 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig8.15639.1mRNA_C-linearis_contig8.15639.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig8 2153566..2157527 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig8.15639.1 ID=prot_C-linearis_contig8.15639.1|Name=mRNA_C-linearis_contig8.15639.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=126bp
MEDIGQYHHQRALFELFGVGEGDGVYVLICGLILGGLSFTACCYCKVLDP
LRLWCLKKTKDCCKRKPTPPPEPEPETPAAPDRRHWYLNQTLQIDRRDRD
ELGPVGDREGLQGGWYGAKNGGFNV*
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