mRNA_C-linearis_contig8.15639.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig8.15639.1
Unique NamemRNA_C-linearis_contig8.15639.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
[Close]
BLAST of mRNA_C-linearis_contig8.15639.1 vs. uniprot
Match: D8LUC5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LUC5_ECTSI)

HSP 1 Score: 166 bits (420), Expect = 1.970e-44
Identity = 86/125 (68.80%), Postives = 96/125 (76.80%), Query Frame = 1 
Query:  310 MEDIGQYHHQRALFELFGVGEGDGVYVLICGLILGGLSFTACCYCKVLDPLRLWCLKKTKDCCKRKPTXXXXXXXXTPAAPDRRHWYLNQTLQIDRRDRDELGPVGDREGLQGGWYGAKNGGFNV 684
            MED G  H +R LF++FGV E DG YVLI GLI+GGL+FTACCYCKV DPLR W +K    CCK+   XXXXXXXX      RRHWYLNQTLQIDR DRDELGP G R GL+GGWYGA+NGGF+V
Sbjct:    1 MEDGGLLHERRILFDVFGVSEDDGAYVLIAGLIMGGLTFTACCYCKVYDPLRNWSIKTYNRCCKKXXXXXXXXXXXXXXXXXRRHWYLNQTLQIDRADRDELGPQGARTGLKGGWYGARNGGFDV 125
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15639.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LUC5_ECTSI1.970e-4468.80Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig8contigC-linearis_contig8:2153566..2157527 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-14_004460.1
Exons3
Model size2625
Cds size378
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig8.15639.1prot_C-linearis_contig8.15639.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig8 2154728..2155589 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930541.9169023-UTR-C-linearis_contig8:2153565..21536561622930541.9169023-UTR-C-linearis_contig8:2153565..2153656Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 2153566..2153656 +
1690881123.0364487-UTR-C-linearis_contig8:2153565..21536561690881123.0364487-UTR-C-linearis_contig8:2153565..2153656Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 2153566..2153656 +
1622930541.9313633-UTR-C-linearis_contig8:2154509..21547271622930541.9313633-UTR-C-linearis_contig8:2154509..2154727Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 2154510..2154727 +
1690881123.0464585-UTR-C-linearis_contig8:2154509..21547271690881123.0464585-UTR-C-linearis_contig8:2154509..2154727Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 2154510..2154727 +
1622930541.9893353-UTR-C-linearis_contig8:2155589..21575271622930541.9893353-UTR-C-linearis_contig8:2155589..2157527Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 2155590..2157527 +
1690881123.0770824-UTR-C-linearis_contig8:2155589..21575271690881123.0770824-UTR-C-linearis_contig8:2155589..2157527Chordaria linearis ClinC8C monoicousUTRC-linearis_contig8 2155590..2157527 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930541.9473317-CDS-C-linearis_contig8:2154727..21549731622930541.9473317-CDS-C-linearis_contig8:2154727..2154973Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2154728..2154973 +
1690881123.0574079-CDS-C-linearis_contig8:2154727..21549731690881123.0574079-CDS-C-linearis_contig8:2154727..2154973Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2154728..2154973 +
1622930541.9695675-CDS-C-linearis_contig8:2155457..21555891622930541.9695675-CDS-C-linearis_contig8:2155457..2155589Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2155458..2155589 +
1690881123.0660207-CDS-C-linearis_contig8:2155457..21555891690881123.0660207-CDS-C-linearis_contig8:2155457..2155589Chordaria linearis ClinC8C monoicousCDSC-linearis_contig8 2155458..2155589 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig8.15639.1

>prot_C-linearis_contig8.15639.1 ID=prot_C-linearis_contig8.15639.1|Name=mRNA_C-linearis_contig8.15639.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=126bp
MEDIGQYHHQRALFELFGVGEGDGVYVLICGLILGGLSFTACCYCKVLDP
LRLWCLKKTKDCCKRKPTPPPEPEPETPAAPDRRHWYLNQTLQIDRRDRD
ELGPVGDREGLQGGWYGAKNGGFNV*
back to top

mRNA from alignment at C-linearis_contig8:2153566..2157527+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig8.15639.1 ID=mRNA_C-linearis_contig8.15639.1|Name=mRNA_C-linearis_contig8.15639.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3962bp|location=Sequence derived from alignment at C-linearis_contig8:2153566..2157527+ (Chordaria linearis ClinC8C monoicous)
CGTGCCAGTCCCGCCGTGCCGCCGTAGTGATAGCGACACTCGTCTCGCAT
AGGAACTGCCACAGCGAATTGTGTAAGTTGGAGAAGCCAAGGTGAGTCGC
TACGGGTGTACGCTGTTGTCTTCAGCAGAAGGAGTGCGAGAGGAAATGAG
GGTCTGAAAGTCGGATTGATGAGGAGGGCGGCAGTGTTCTTTCAATCTGC
GAAATCATGAGTTCCAACAACAAGAGGGGTTGCCATCGTGGCGGCTGTCT
GATACCCAACACGGCGGCACCTTTGGGCTGTGCTTGATCGTTGCTTATCT
AACGCTCCACAGCGGGAAGTTCAGAAATGTTACTCCATCGACTTATGTAG
TAGTAGGCTGGAGAGAGCGAAGACGTCCCGCTTGTTGCACCAACAGCACG
TTCCGTTCTCTTTCTCTCGCGCTCTCTTCCGCGGGGCCAACGGCAAAACA
CGAGGCGACCCAGAATTGGTCGGTGTGCTGGTTTAGTCGTACACCTTTCT
TTGCGATTTCAAAAAGAAAAAATGCGCACAAGGGTGTGCGCATCCTGTTG
CAACCTTTCGTGGTCTAGTCTATACCGGCCGTTCGGGAGGGCGCCAACGA
TGCGATCGGTCCCTACAATGTCTCCGTTGTTACGTTTTTACCGCCGAACA
CGCCGATAGCGTCAAGTTTGAGGAGAGAAAGGAATTCGGCCATTCCGTGC
AAGAGTATCGCCTAATTTCACCTCGCTGAGAAACTGGTTATGGCATTTTG
GCCCCGTCGCCCCCCCATCTCACTCTCTGGCGGCTTTCATACGGATGCGA
GGTCTCTACACAGAGTATGGCCCTCCTAGCGACTACACTATTGTGGCAGG
CGCACAAATAATACATTGGGTACGCCCTCTTACTCCTCCACCCTGCCTGC
CGCCCGTTCTCTCTCCCTCTTATGTATTCCCCATGTGCCTGCAGCACACA
CGAAGCCGGCTGGTGGGATCACAAGCCAATACGCGAGCTAGGACCTCCTG
TAGCTTATGGTACCCCTGGAAAAAAACTCAAAACGCTGAGCTCGGAAAGG
AGAGAGGCCAGCGGTGTTTGAGGGGAATTAGGGTCAGGCGACGAGTGGGG
AACGTGGAAGCGGAAGCCAAGAGCAGGCGATCGAACCGAGGCTCAAGCAG
CAAATTGAAAGCATGGAGGACATCGGTCAATACCATCACCAGCGCGCCCT
TTTTGAGCTGTTCGGCGTGGGAGAGGGAGACGGGGTCTACGTCCTCATCT
GCGGGCTGATACTGGGAGGCCTGTCGTTCACCGCGTGTTGCTACTGCAAG
GTTTTGGACCCGTTGCGATTGTGGTGCCTCAAGAAGACCAAGGACTGCTG
TAAGAGGAAGCCGACGCCACCTCCAGAGCCCGAACCAGAAACCCCGGCAG
CGCCAGACGTGAGAAAACATTGAAAAGGCTCTCTCTGCCTGTTATGGTAA
AGGCGAAAACGAGGTAGTAGGCGGTTCTCCGCCCCGGCTTGGGTCGAAGG
ACTATGGCCTGCGCGATATCGACTACGGCCCACCCTTCCTGCGACCTCTT
TGGCCGCCAGCCACTCTGTTCGGTATTTTGATCTTGTGGGCCTCTGCGGA
TCCCGTTCTCCCTTTCACGTCCCCCCCGCGGGTCTCATGTGGTATCAACC
GCACACGGGGCAAGACCACGAAAAGAATGAACTCAAAGTATTCGCGTTTG
TATGTTCGCGACTTTCCTTTCCACACCCCTCACCTGTGCGGTACCGATAC
CTGCCCACCCCCTTCTGACATTCTCTCTCTGTACCCCTGCTTGCCTGCCC
CACCCCACCCTTTGTTTCTTGTTTCGGGCTTTCCGACCATTGTCTCATTT
CCCCCGGCGGATATCACACCAACTTGTGTAACCTCACAAAAGCGCCGGCA
CTGGTACCTGAACCAGACGCTGCAGATCGACCGCCGAGACCGAGACGAGC
TAGGGCCGGTGGGAGACAGAGAAGGGTTGCAGGGGGGCTGGTACGGCGCA
AAAAATGGTGGCTTCAATGTCTGATCCTCGCGTGATTTTGTTGCTGGTGT
GGTGCCCCGCGCGTTGTGTTTATTATTTGTTCATTGCCACGTTCATAGTA
GGTAGTCGCCTGGCCGACCCAGGAACATTACGTCAGTTTTAGCGGATCGA
AATCCTGTCGTCGGTATCTGTGTATCATACATAAGAAGATTTTTTTTTTC
CCACCCGAGACGTTGGTTAGTTGCAAGATGAGCACCGACCGCCGCGTTTT
TCTTCTCTCAAGACCGCGCAGTCCGAGCAATAGAAGTAGTTCGTGGGCAA
CAGCAAGAGGCCTGTTGGGGAAATTTAAATTTTGTGCGAGAAAAGCAGGC
GGCACTTCCGAACGTTTGTGTGAATTGCGTTGTTGATTCACCGTTCGTTG
CTTTCCCGGTGCGTGCCAAGGCCAATCGGTTGCCACCCGCTGCGCGTACG
TGATGATGATGCTGTTAATTTAGTCGTTTTTCTATGCGAGTAGCCGTTGA
AACCTTAACCTTTACCTTTTCGTGCGAGCGGGGGAAAAGTCCGCTCTCTC
TGTAAAATCTCGAGCGTTTTGTTCCTCTCTGCACCTTCTGTTTGTCTACG
CGCGTTGTCAACAACCAGAAAGAGCTGAGAGATTTTACCTTGTGTCACAG
GAAAAAGAGCAACGGGACAGAAGCCTTTACCTTGTTGCGTTACACGCCTT
GCTTTGTTGGCGTTGCTGTTCGCACCCGTTGGGTGGCATGCGCCCCCATT
CGGAGAGCCCGCTTCAACGAAGTGTTTGTTTCGAAAGCCAGGAATGCTTC
CGAGGCTTTCCTTGCAGCTGAGGGGAACATAAGGGCGTGTTTGCAATATT
TGCTGAAGCGGTGGTTAACGATTTGATCAAAGGACCAATGCGAATCTCTT
GTGCTCTCCGCTGTTGTGAGAAAGGCCAGAAAGGCATTTCGAGGAGACTG
CCCAAAATGGGCAACGACGCTTCGCATCGAGCGAGAGTAAAGGTACTCGA
GCCAAACCAAGGAACGGAGAGCATGCCCTATACCCCTATTCCATTCGTTG
ATAAAGGAGAAACACACCTCATTAGCTGCCAGAGAAGGCGCAGACGGCTC
ACCTCCCTAACACACTTGCCCATCATCACCCTTTTATTTTGCAAGCTCGA
CGCTGCTGGATCGAAGGACTAGTTAACCACCCCAGCTCAGACTACAGGAA
CAGCAAACCACACGCACCCCGCGTTTGCCAGGAGAGCCGACAAGCTATCC
GTGCATTCATCTCAGCGGTTTCCTATGTTCTTTTGCGCATACCACGTGTG
TGTGTGTACCGCGGGGTTTGGAGGTTTACCATACAAGATCGGCCACCTGG
CCGAAGGCAAGGATCATACAGTTCACCCCACCCGCAGGCCTTGTGGCTTT
CTTTCAGCAGAACTTGATGCAAACTACAGGCAGCATGATGCCGCTAGATA
GGCATGTACGTTGGGGGGGGGGGGGATACAAACTTCGTAGAAAGGCATTC
CCCTTGACCTTCTGTATAAATCCATCTGAAAGCTTCCCGGAAACTTGAAT
CGTACCGAATCAACCAAACAAGTTGAAAATACTGTAGGCGAAACCCTGGA
ATCTCTTGAATCATACACTTCACTTCAAAATAGTGTACCACGGATTCAAA
GCGTCCATTTTTAATCAGGCTGAAAAGTTGGATGATTCAAAGCACGATTG
GTGTCCCCCTCAACGGTATCAGAACTGCAACAAAGTATGGGCCCAAGTGA
TGTCCTGCACGGGCGCCATTTGTGTCGTACTTTAGGCTAAATCCCAGAAT
ACTTGAATCATACACTTCACTTCAAAATCGTGTACCGTCATTCGAAGCGT
CCATTCTCAGTCAGGCTGAAAAGTTGGATGATTCAAAGCACGATTGGTGC
CCCCCTCAACGGTATCAGAACTGCAACAAAGTATGGGCCCAAGTGATGTC
CTGCACGAGCGC
back to top

Coding sequence (CDS) from alignment at C-linearis_contig8:2153566..2157527+

>mRNA_C-linearis_contig8.15639.1 ID=mRNA_C-linearis_contig8.15639.1|Name=mRNA_C-linearis_contig8.15639.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=756bp|location=Sequence derived from alignment at C-linearis_contig8:2153566..2157527+ (Chordaria linearis ClinC8C monoicous)
ATGGAGGACATCGGTCAATACCATCACCAGCGCGCCCTTTTTGAGCTGTT
CGGCGTGGGAGAGGGAGACGGGGTCTACGTCCTCATCTGCGGGCTGATAC
TGGGAGGCCTGTCGTTCACCGCGTGTTGCTACTGCAAGGTTTTGGACCCG
TTGCGATTGTGGTGCCTCAAGAAGACCAAGGACTGCTGTAAGAGGAAGCC
GACGCCACCTCCAGAGCCCGAACCAGAAACCCCGGCAGCGCCAGACATGG
AGGACATCGGTCAATACCATCACCAGCGCGCCCTTTTTGAGCTGTTCGGC
GTGGGAGAGGGAGACGGGGTCTACGTCCTCATCTGCGGGCTGATACTGGG
AGGCCTGTCGTTCACCGCGTGTTGCTACTGCAAGGTTTTGGACCCGTTGC
GATTGTGGTGCCTCAAGAAGACCAAGGACTGCTGTAAGAGGAAGCCGACG
CCACCTCCAGAGCCCGAACCAGAAACCCCGGCAGCGCCAGACCGCCGGCA
CTGGTACCTGAACCAGACGCTGCAGATCGACCGCCGAGACCGAGACGAGC
TAGGGCCGGTGGGAGACAGAGAAGGGTTGCAGGGGGGCTGGTACGGCGCA
AAAAATGGTGGCTTCAATGTCTGACGCCGGCACTGGTACCTGAACCAGAC
GCTGCAGATCGACCGCCGAGACCGAGACGAGCTAGGGCCGGTGGGAGACA
GAGAAGGGTTGCAGGGGGGCTGGTACGGCGCAAAAAATGGTGGCTTCAAT
GTCTGA
back to top